PHENX

Other names: PhenX, PHENX

Standard measures related to complex diseases, phenotypic traits and environmental exposures.

Webpage:

https://www.phenx.org/

Publications:

Publications
More detailed information about this field from each metasource.

The PhenX Toolkit: get the most from your measures
PMID: 21749974
metasource: Fairsharing.org
version: FAIRsharing.org: PhenX; PhenX Phenotypic Terms; DOI: https://doi.org/10.25504/FAIRsharing.y5jcwa; Last edited: Aug. 13, 2019, 4:35 p.m.; Last accessed: Jan 03 2022 7:14 p.m.

PhenX: a toolkit for interdisciplinary genetics research
PMID: 20154612
metasource: Fairsharing.org
version: FAIRsharing.org: PhenX; PhenX Phenotypic Terms; DOI: https://doi.org/10.25504/FAIRsharing.y5jcwa; Last edited: Aug. 13, 2019, 4:35 p.m.; Last accessed: Jan 03 2022 7:14 p.m.

PhenX measures for phenotyping rare genetic conditions
PMID: 28079902
metasource: Fairsharing.org
version: FAIRsharing.org: PhenX; PhenX Phenotypic Terms; DOI: https://doi.org/10.25504/FAIRsharing.y5jcwa; Last edited: Aug. 13, 2019, 4:35 p.m.; Last accessed: Jan 03 2022 7:14 p.m.

The PhenX Toolkit: get the most from your measures PubMed citations: 236.

236 articles citing: The PhenX Toolkit: get the most from your measures

Linking complex disease and exposure data-insights from an environmental and occupational health study. PMID:35347232
Couple Communication in Cancer: Protocol for a Multi-Method Examination. PMID:35222142
Methods to Improve Molecular Diagnosis in Genomic Cold Cases in Pediatric Neurology. PMID:35205378
A Prospective Study of Mental Health, Well-Being, and Substance Use During the Initial COVID-19 Pandemic Surge. PMID:35174007
Associations of physical activity with gut microbiota in pre-adolescent children. PMID:35152621
Patient Engagement With a Game-Based Digital Therapeutic for the Treatment of Opioid Use Disorder: Protocol for a Randomized Controlled Open-Label, Decentralized Trial. PMID:35080499
A systematic search and critical review of studies evaluating psychometric properties of patient-reported outcome measures for schizophrenia. PMID:35007807
Electronic cigarettes as a harm reduction strategy among patients with COPD: protocol for an open-label two arm randomized controlled pilot trial. PMID:34991693
Predisposing, Enabling, and Need-Related Factors Associated with Human Papillomavirus Vaccination Intentions and Uptake Among Black and Hispanic Sexual and Gender Diverse Adults in the USA. PMID:34981465
Epigenetic Analyses of Alcohol Consumption in Combustible and Non-Combustible Nicotine Product Users. PMID:34968367
Assessing Racial and Ethnic Discrimination in Children: A Scoping Review of Available Measures for Child Health Disparities Research. PMID:34909543
COVID-19 and medical education in Africa: a cross sectional analysis of the impact on medical students. PMID:34879844
The effects of cannabis use on physical health: A co-twin control study. PMID:34871975
Predicting multilingual effects on executive function and individual connectomes in children: An ABCD study. PMID:34845019
Smartband-Based Automatic Smoking Detection and Real-time Mindfulness Intervention: Protocol for a Feasibility Trial. PMID:34783663
Assessing the impact of the COVID-19 pandemic on pragmatic clinical trial participants. PMID:34775101
Contributing roles of depression, anxiety, and impulsivity dimensions in eating behaviors styles in surgery candidates. PMID:34749827
Demographic and mental health assessments in the adolescent brain and cognitive development study: Updates and age-related trajectories. PMID:34742018
An update on the assessment of culture and environment in the ABCD Study®: Emerging literature and protocol updates over three measurement waves. PMID:34700197
Pre-statistical harmonization of behavrioal instruments across eight surveys and trials. PMID:34689753
Motivations to Vaccinate Among Hesitant Adopters of the COVID-19 Vaccine. PMID:34687388
Update to 2019-2022 ONS Research Agenda: Rapid Review to Address Structural Racism and Health Inequities. PMID:34673760
Assessing Sex, Gender Identity, Sexual Orientation, Race, Ethnicity, Socioeconomic Status, and Mental Health Concerns in Tobacco Use Disorder Treatment Research: Measurement Challenges and Recommendations From a Society for Research on Nicotine and Tobacco Pre-conference Workshop. PMID:34622932
Tools for standardized data collection: Speech, Language, and Hearing measurement protocols in the PhenX Toolkit. PMID:34582045
Study of rare genetic variants in TM4SF20, NFXL1, CNTNAP2, and ATP2C2 in Pakistani probands and families with language impairment. PMID:34540591
Cortical Thickness in bilingual and monolingual children: Relationships to language use and language skill. PMID:34506917
Catalyzing Knowledge-Driven Discovery in Environmental Health Sciences through a Community-Driven Harmonized Language. PMID:34501574
Factors associated with willingness to wear a mask to prevent the spread of COVID-19 in a Midwestern Community. PMID:34493965
Timing of smoking cessation treatment integrated into outpatient treatment with medications for opioid use disorder: Feasibility trial. PMID:34452780
Expanding the analysis of mechanisms of action in behavioral interventions: cognitive change versus cognitive activation. PMID:34445902
Impact of COVID-19 Stay-at-Home Orders on Health Behaviors and Anxiety in Black and White Americans. PMID:34414565
Sleep and Coping in Early Childhood During the COVID-19 Pandemic. PMID:34395348
The psychosis human connectome project: An overview. PMID:34339830
A Map of the Initiatives That Harmonize Patient Cohorts Across the World. PMID:34336764
Theory, methods, and operational results of the Young Women's Health History Study: a study of young-onset breast cancer incidence in Black and White women. PMID:34292440
An Examination of the Feasibility of Detecting Cocaine Use Using Smartwatches. PMID:34248712
Social and Structural Determinants of Health Inequities: Socioeconomic, Transportation-Related, and Provincial-Level Indicators of Cost-Related Forgone Hospital Care in China. PMID:34204018
Examining the effects of social determinants of health on COVID-19 related stress, family's stress and discord, and personal diagnosis of COVID-19. PMID:34151315
Leveraging big data to map neurodevelopmental trajectories in pediatric anxiety. PMID:34147988
Leveraging the Electronic Health Record to Address the COVID-19 Pandemic. PMID:34088418
Using the PhenX Toolkit to Select Standard Measurement Protocols for Your Research Study. PMID:34038028
Body composition outcomes of Healthy Fit and the role of acculturation among low-income Hispanics on the US-Mexico border. PMID:34034711
Genomic medicine implementation protocols in the PhenX Toolkit: tools for standardized data collection. PMID:33972721
A System for Phenotype Harmonization in the National Heart, Lung, and Blood Institute Trans-Omics for Precision Medicine (TOPMed) Program. PMID:33861317
Improved characterisation of clinical text through ontology-based vocabulary expansion. PMID:33845909
Tremors: A concept analysis. PMID:33797860
Social Cognitive Abilities Predict Unique Aspects of Older Adults' Personal Social Networks. PMID:33733655
Addressing Health Equity and Social Determinants of Health Through Healthy People 2030. PMID:33729197
Social Behaviors Associated With a Positive COVID-19 Test Result. PMID:33680606
Design of the Arizona CoVHORT: A Population-Based COVID-19 Cohort. PMID:33643990
Comparison of Past Year Substance Use Estimates by Age, Sex, and Race/Ethnicity Between Two Representative Samples of the U.S. Adult Population. PMID:33642658
DNA methylation differentiates smoking from vaping and non-combustible tobacco use. PMID:33588690
Pediatric Neurodevelopmental Delays in Children 0 to 5 Years of Age With Sickle Cell Disease: A Systematic Literature Review. PMID:33560086
Infant Feeding Practices and Subsequent Dietary Patterns of School-Aged Children in a US Birth Cohort. PMID:33544667
Shared Environmental Influences on Electronic Cigarette Use Among Adolescent and Young Adult Females. PMID:33539519
Prognostic neuroimaging biomarkers of trauma-related psychopathology: resting-state fMRI shortly after trauma predicts future PTSD and depression symptoms in the AURORA study. PMID:33479509
Suubi+Adherence-Round 2: A study protocol to examine the longitudinal HIV treatment adherence among youth living with HIV transitioning into young adulthood in Southern Uganda. PMID:33478469
Risk factors associated with curiosity about alcohol use in the ABCD cohort. PMID:33434614
A longitudinal assessment of nicotine dependence, mental health, and attempts to quit Smoking: Evidence from waves 1-4 of the Population Assessment of Tobacco and Health (PATH) study. PMID:33383566
Switching to Progressively Reduced Nicotine Content Cigarettes in Smokers With Low Socioeconomic Status: A Double-Blind Randomized Clinical Trial. PMID:33249498
Changes in Social Behavior Over Time During the COVID-19 Pandemic. PMID:33150106
The terminology of social emergency medicine: Measuring social determinants of health, social risk, and social need. PMID:33145531
Association between cesarean delivery types and obesity in preadolescence. PMID:32873910
Diet during Pregnancy and Gestational Weight Gain in a Michigan Pregnancy Cohort. PMID:32793851
The Impact of Sheltering in Place During the COVID-19 Pandemic on Older Adults' Social and Mental Well-Being. PMID:32778899
Assessing the impact of COVID-19 on persons with disabilities: development of a novel survey. PMID:32705300
Neighborhood environment perceptions associate with depression levels and cardiovascular risk among middle-aged and older adults: Data from the Washington, DC cardiovascular health and needs assessment. PMID:32691611
Maternal plasma metabolic markers of neonatal adiposity and associated maternal characteristics: The GUSTO study. PMID:32523012
Anthropometric measures and HbA1c to detect dysglycemia in young Asian women planning conception: The S-PRESTO cohort. PMID:32514017
Perceptions of US Adolescents and Adults With Sickle Cell Disease on Their Quality of Care. PMID:32469413
An Assessment of Environmental Health Measures in the Deepwater Horizon Research Consortia. PMID:32457927
A Comparison between Cigarette Topography from a One-Week Natural Environment Study to FTC/ISO, Health Canada, and Massachusetts Department of Public Health Puff Profile Standards. PMID:32429116
A structural brain network of genetic vulnerability to psychiatric illness. PMID:32372008
Development of a scale battery for rapid assessment of risk and resilience. PMID:32361336
Implication of gut microbiota in the association between infant antibiotic exposure and childhood obesity and adiposity accumulation. PMID:32321980
Aberrant Resting-State Cerebellar-Cerebral Functional Connectivity in Methamphetamine-Dependent Individuals After Six Months Abstinence. PMID:32296352
The human connectome project for disordered emotional states: Protocol and rationale for a research domain criteria study of brain connectivity in young adult anxiety and depression. PMID:32147367
Parental and social factors in relation to child psychopathology, behavior, and cognitive function. PMID:32102994
Parent socialization of emotion in a high-risk sample. PMID:32077719
A Proposed Waterpipe Emissions Topography Protocol Reflecting Natural Environment User Behaviour. PMID:31877722
Monitoring, assessing, and responding to suicide risk in clinical research. PMID:31868389
Proposed minimum information guideline for kidney disease-research and clinical data reporting: a cross-sectional study. PMID:31772086
Diversity In Precision Medicine And Pharmacogenetics: Methodological And Conceptual Considerations For Broadening Participation. PMID:31686892
Neighborhood Influences on Women's Parenting Practices for Adolescents' Outdoor Play: A Qualitative Study. PMID:31614711
Unraveling the genetic architecture of major depressive disorder: merits and pitfalls of the approaches used in genome-wide association studies. PMID:31559935
Effects of Naltrexone on Large-Scale Network Interactions in Methamphetamine Use Disorder. PMID:31551824
CATSLife: A Study of Lifespan Behavioral Development and Cognitive Functioning. PMID:31547893
Common Data Elements for National Institute of Mental Health-Funded Translational Early Psychosis Research. PMID:31439493
Developing Large-Scale Research in Response to an Oil Spill Disaster: a Case Study. PMID:31376082
Development of outcome-specific criteria for study evaluation in systematic reviews of epidemiology studies. PMID:31299560
Relationship of HIV Status and Fatigue, Cardiorespiratory Fitness, Myokines, and Physical Activity. PMID:31241504
Genes for Good: Engaging the Public in Genetics Research via Social Media. PMID:31204010
The chippers, the quitters, and the highly symptomatic: A 12-month longitudinal study of DSM-5 opioid- and cocaine-use problems in a community sample. PMID:31108264
How Does Acculturation Influence Smoking Behavior Among Latinos? The Role of Education and National Background. PMID:31057307
Harmonization of the Health and Risk Factor Questionnaire data of the Canadian Partnership for Tomorrow Project: a descriptive analysis. PMID:31018973
Developing a Physical Activity Ontology to Support the Interoperability of Physical Activity Data. PMID:31012864
A genome-wide analysis in consanguineous families reveals new chromosomal loci in specific language impairment (SLI). PMID:30976110
Socioeconomic differences in nicotine exposure and dependence in adult daily smokers. PMID:30943945
Navigating Speed Bumps on the Innovation Highway in Hemophilia Therapeutics. PMID:30887008
Capitalizing on a teachable moment: Development of a targeted self-help smoking cessation intervention for patients receiving lung cancer screening. PMID:30885332
Longitudinal pathways linking family risk, neural risk processing, delay discounting, and adolescent substance use. PMID:30809804
The Effect of an HIV Self-Management Intervention on Neurocognitive Behavioral Processing. PMID:30654713
Mental Health Problems and Onset of Tobacco Use Among 12- to 24-Year-Olds in the PATH Study. PMID:30522740
PPD ACT: an app-based genetic study of postpartum depression. PMID:30498212
Functional brain activation changes associated with practice in delaying smoking among moderate to heavy smokers: study protocol and rationale of a randomized trial (COPE). PMID:30419931
A Group Randomized Trial to Reduce Obesity among Appalachian Church Members: The Walk by Faith Study. PMID:30337343
Ecologically assessed affect and suicidal ideation following psychiatric inpatient hospitalization. PMID:30297091
A preliminary randomized clinical trial of naltrexone reduces striatal resting state functional connectivity in people with methamphetamine use disorder. PMID:30266003
Capacity for upregulation of emotional processing in psychopathy: all you have to do is ask. PMID:30257006
Criminal justice measures for economic data harmonization in substance use disorder research. PMID:30242561
The Lifespan Human Connectome Project in Development: A large-scale study of brain connectivity development in 5-21 year olds. PMID:30142446
CDEGenerator: an online platform to learn from existing data models to build model registries. PMID:30127646
Longitudinal associations between youth tobacco and substance use in waves 1 and 2 of the Population Assessment of Tobacco and Health (PATH) Study. PMID:30077053
Developing a synthetic psychosocial stress measure and harmonizing CVD-risk data: a way forward to GxE meta- and mega-analyses. PMID:30041705
Application of data pooling to longitudinal studies of early post-traumatic stress disorder (PTSD): the International Consortium to Predict PTSD (ICPP) project. PMID:29938009
Effect of e-liquid flavor on electronic cigarette topography and consumption behavior in a 2-week natural environment switching study. PMID:29718974
Evaluation of Healthy Fit: A Community Health Worker Model to Address Hispanic Health Disparities. PMID:29704370
Opposite Genetic Effects of CMIP Polymorphisms on the Risk of Type 2 Diabetes and Obesity: A Family-Based Study in China. PMID:29597287
Impulsive dispositions and alcohol: what we know, how we know it, and where to go from here. PMID:29556398
Precollege Sexual Violence Perpetration and Associated Risk and Protective Factors Among Male College Freshmen in Georgia. PMID:29455718
Body mass index and tobacco-product use among U.S. youth: Findings from wave 1 (2013-2014) of the Population Assessment of Tobacco and Health (PATH) Study. PMID:29452981
Randomized Controlled Trial of the SystemCHANGE Intervention on Behaviors Related to Cardiovascular Risk in HIV+ Adults. PMID:29373392
Perceived Discrimination as a Risk Factor for Use of Emerging Tobacco Products: More Similarities Than Differences Across Demographic Groups and Attributions for Discrimination. PMID:29338581
Standard measures for sickle cell disease research: the PhenX Toolkit sickle cell disease collections. PMID:29296922
Replication in Imaging Genetics: The Case of Threat-Related Amygdala Reactivity. PMID:29279201
Creation of Data Repositories to Advance Nursing Science. PMID:29277149
Proposed guidelines to evaluate scientific validity and evidence for genotype-based dietary advice. PMID:29270237
Joint Effects of PON1 Polymorphisms and Vegetable Intake on Ischemic Stroke: A Family-Based Case Control Study. PMID:29215590
The Influence of Exercise on Cardiovascular Health in Sedentary Adults With Human Immunodeficiency Virus. PMID:29189426
Initial validation of brief measures of suicide risk factors: Common data elements used by the Military Suicide Research Consortium. PMID:29130694
Demographic, physical and mental health assessments in the adolescent brain and cognitive development study: Rationale and description. PMID:29113758
Feasibility of Using Ecological Momentary Assessment to Study Unaided Smoking Cessation in Couples. PMID:29099981
Annual Research Review: Suicide among youth - epidemiology, (potential) etiology, and treatment. PMID:29090457
Body composition measurement in young children using quantitative magnetic resonance: a comparison with air displacement plethysmography. PMID:29024557
Which anthropometric measures best reflect neonatal adiposity? PMID:28990589
Progesterone for smoking relapse prevention following delivery: A pilot, randomized, double-blind study. PMID:28926762
Sex/Gender Differences in Cotinine Levels Among Daily Smokers in the Pennsylvania Adult Smoking Study. PMID:28872928
Monetary conversion factors for economic evaluations of substance use disorders. PMID:28847452
Co-occurrence of tobacco product use, substance use, and mental health problems among youth: Findings from wave 1 (2013-2014) of the population assessment of tobacco and health (PATH) study. PMID:28846942
Extracting Country-of-Origin from Electronic Health Records for Gene- Environment Studies as Part of the Epidemiologic Architecture for Genes Linked to Environment (EAGLE) Study. PMID:28815105
Conclusion: Special issue on genetic and alcohol use disorder research with diverse racial/ethnic groups: Key findings and potential next steps. PMID:28745446
Opportunities and Challenges for Environmental Exposure Assessment in Population-Based Studies. PMID:28710076
The Women and Their Children's Health (WaTCH) study: methods and design of a prospective cohort study in Louisiana to examine the health effects from the BP oil spill. PMID:28698324
Role of magnesium supplementation in the treatment of depression: A randomized clinical trial. PMID:28654669
A behavioral typology of opioid overdose risk behaviors among recent veterans in New York City. PMID:28594892
Co-occurrence of tobacco product use, substance use, and mental health problems among adults: Findings from Wave 1 (2013-2014) of the Population Assessment of Tobacco and Health (PATH) Study. PMID:28582698
Research standardization tools: pregnancy measures in the PhenX Toolkit. PMID:28578176
Leveraging Genomic Data in Smoking Cessation Trials in the Era of Precision Medicine: Why and How. PMID:28498934
Cohort Profile: African Collaborative Center for Microbiome and Genomics Research's (ACCME's) Human Papillomavirus (HPV) and Cervical Cancer Study. PMID:28419249
The GuLF STUDY: A Prospective Study of Persons Involved in the Deepwater Horizon Oil Spill Response and Clean-Up. PMID:28362265
Representing Residence, Living Situation, and Living Conditions: An Evaluation of Terminologies, Standards, Guidelines, and Measures/Surveys. PMID:28269967
Public Attitudes toward Consent and Data Sharing in Biobank Research: A Large Multi-site Experimental Survey in the US. PMID:28190457
Postnatal height and adiposity gain, childhood blood pressure and prehypertension risk in an Asian birth cohort. PMID:28186098
PhenX measures for phenotyping rare genetic conditions. PMID:28079902
Informatics and Data Analytics to Support Exposome-Based Discovery for Public Health. PMID:28068484
Associations of Maternal Dietary Patterns during Pregnancy with Offspring Adiposity from Birth Until 54 Months of Age. PMID:28025503
The Social Determinants of Health Core: Taking a Place-Based Approach. PMID:27989288
Data Resource Profile: Cross-national and cross-study sociodemographic and health-related harmonized domains from SAGE plus ELSA, HRS and SHARE (SAGE+, Wave 1). PMID:27794522
Infant body mass index peak and early childhood cardio-metabolic risk markers in a multi-ethnic Asian birth cohort. PMID:27649801
Development of an Inflammatory Bowel Disease Research Registry Derived from Observational Electronic Health Record Data for Comprehensive Clinical Phenotyping. PMID:27619390
Generalizing Treatment Effect Estimates From Sample to Population: A Case Study in the Difficulties of Finding Sufficient Data. PMID:27491758
Proceedings of a Sickle Cell Disease Ontology workshop - Towards the first comprehensive ontology for Sickle Cell Disease. PMID:27354937
The association of maternal vitamin D status with infant birth outcomes, postnatal growth and adiposity in the first 2 years of life in a multi-ethnic Asian population: the Growing Up in Singapore Towards healthy Outcomes (GUSTO) cohort study. PMID:27339329
Comparison of Puff Volume With Cigarettes per Day in Predicting Nicotine Uptake Among Daily Smokers. PMID:27313218
Neurobiological model of the persistence of anorexia nervosa. PMID:27195123
Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database. PMID:27170236
Addressing gaps on risk and resilience factors for alcohol use outcomes in sexual and gender minority populations. PMID:27072658
Patient question set proliferation: scope and informatics challenges of patient question set management in a large multispecialty practice with case examples pertaining to tobacco use, menopause, and Urology and Orthopedics specialties. PMID:27066892
Can data repositories help find effective treatments for complex diseases? PMID:27018167
Representation of Drug Use in Biomedical Standards, Clinical Text, and Research Measures. PMID:26958169
Prepubertal children exposed to concentrated disadvantage: An exploratory analysis of inflammation and metabolic dysfunction. PMID:26955975
Changes in negative urgency, positive urgency, and sensation seeking across adolescence. PMID:26949280
Common Measures for National Institute of Mental Health Funded Research. PMID:26903402
Unravelling the human genome-phenome relationship using phenome-wide association studies. PMID:26875678
Racial differences in neighborhood disadvantage, inflammation and metabolic control in black and white pediatric type 1 diabetes patients. PMID:26783014
Addictions Neuroclinical Assessment: A Neuroscience-Based Framework for Addictive Disorders. PMID:26772405
MC3R gene polymorphisms are associated with early childhood adiposity gain and infant appetite in an Asian population. PMID:26663875
The Cooperative Health Research in South Tyrol (CHRIS) study: rationale, objectives, and preliminary results. PMID:26541195
Data Harmonization in Aging Research: Not so Fast. PMID:26524232
Pilot randomised trial of a healthy eating behavioural intervention in uncontrolled asthma. PMID:26493792
Data Collection and Harmonization in HIV Research: The Seek, Test, Treat, and Retain Initiative at the National Institute on Drug Abuse. PMID:26469642
Translation of an Action Learning Collaborative Model Into a Community-Based Intervention to Promote Physical Activity and Healthy Eating. PMID:26315034
Harmonising and linking biomedical and clinical data across disparate data archives to enable integrative cross-biobank research. PMID:26306643
Extending the coverage of phenotypes in SNOMED CT through post-coordination. PMID:26262161
Study design, intervention, and baseline characteristics of a group randomized trial involving a faith-based healthy eating and physical activity intervention (Walk by Faith) to reduce weight and cancer risk among overweight and obese Appalachian adults. PMID:26115879
Oral Health in a Sample of Pregnant Women from Northern Appalachia (2011-2015). PMID:26089906
The effects of electronic medical record phenotyping details on genetic association studies: HDL-C as a case study. PMID:25969697
Implementing common data elements across studies to advance research. PMID:25771192
Candidate gene-environment interaction research: reflections and recommendations. PMID:25620996
Genetic susceptibility to dental caries differs between the sexes: a family-based study. PMID:25612913
Measures of exposure impact genetic association studies: an example in vitamin K levels and VKORC1. PMID:25592578
Finding our way through phenotypes. PMID:25562316
Project INTEGRATE: An integrative study of brief alcohol interventions for college students. PMID:25546144
Genetic relationship between the addiction diagnosis in adults and their childhood measure of addiction liability. PMID:25502189
Recommendations from the international stroke genetics consortium, part 1: standardized phenotypic data collection. PMID:25492903
Using PhenX toolkit measures and other tools to assess urban/rural differences in health behaviors: recruitment methods and outcomes. PMID:25425113
Expert panel workshop consensus statement on the role of the environment in the development of autoimmune disease. PMID:25196523
Solar exposure and residential geographic history in relation to exfoliation syndrome in the United States and Israel. PMID:25188364
Consideration for gene-environment interactions as novel determinants of exfoliation syndrome. PMID:25171642
eMERGEing progress in genomics-the first seven years. PMID:24987407
Data compatibility in the addiction sciences: an examination of measure commonality. PMID:24954640
Studying the elusive environment in large scale. PMID:24893084
Identifying the appropriate comparison group for HIV-infected individuals. PMID:24840058
A web-portal for interactive data exploration, visualization, and hypothesis testing. PMID:24723882
PhenX RISING: real world implementation and sharing of PhenX measures. PMID:24650325
Validation of PhenX measures in the personalized medicine research project for use in gene/environment studies. PMID:24423110
Environment-wide association study (EWAS) for type 2 diabetes in the Marshfield Personalized Medicine Research Project Biobank. PMID:24297547
Data harmonization and federated analysis of population-based studies: the BioSHaRE project. PMID:24257327
Gene-environment interactions in cancer epidemiology: a National Cancer Institute Think Tank report. PMID:24123198
No evidence of interaction between known lipid-associated genetic variants and smoking in the multi-ethnic PAGE population. PMID:24100633
Sharing behavioral data through a grid infrastructure using data standards. PMID:24076749
Share2Quit: Web-Based Peer-Driven Referrals for Smoking Cessation. PMID:24067329
Electronic health records based phenotyping in next-generation clinical trials: a perspective from the NIH Health Care Systems Collaboratory. PMID:23956018
Integration of behavioral, social science and genetics research: exploring public health significance. PMID:23927547
Genomics and the nature of behavioral and social risk. PMID:23927546
Genetic modifiers of cardiorespiratory fitness response to lifestyle intervention. PMID:23899896
Advances in the science of adolescent drug involvement: implications for assessment and diagnosis - experience from the United States. PMID:23695531
Rapid, responsive, relevant (R3) research: a call for a rapid learning health research enterprise. PMID:23663660
Standardization of Questions in Rare Disease Registries: The PRISM Library Project. PMID:23611924
Validation of electronic medical record-based phenotyping algorithms: results and lessons learned from the eMERGE network. PMID:23531748
Contributions of ethnicity to differential item functioning of cannabis abuse and dependence symptoms. PMID:23384380
Systematic identification of interaction effects between genome- and environment-wide associations in type 2 diabetes mellitus. PMID:23334806
The drug effects questionnaire: psychometric support across three drug types. PMID:23271193
Confluence of genes, environment, development, and behavior in a post Genome-Wide Association Study world. PMID:23062291
Exposome: time for transformative research. PMID:22969025
The PhenX Toolkit pregnancy and birth collections. PMID:22954959
The success of pharmacogenomics in moving genetic association studies from bench to bedside: study design and implementation of precision medicine in the post-GWAS era. PMID:22923055
The genetics of addiction-a translational perspective. PMID:22806211
The evolution of human genetic studies of cleft lip and cleft palate. PMID:22703175
Physical activity and physical fitness: standardizing assessment with the PhenX Toolkit. PMID:22516489
Systematic evaluation of environmental factors: persistent pollutants and nutrients correlated with serum lipid levels. PMID:22421054
Using PhenX measures to identify opportunities for cross-study analysis. PMID:22415805
New models for large prospective studies: is there a better way? PMID:22411865
Application of the National Institutes of Health Patient-reported Outcome Measurement Information System (PROMIS) to mental health research. PMID:22345362
The NIDDK Central Repository at 8 years--ambition, revision, use and impact. PMID:21959867
Building a biomedical cyberinfrastructure for collaborative research. PMID:21521587
PhenX: a toolkit for interdisciplinary genetics research PubMed citations: 39.

39 articles citing: PhenX: a toolkit for interdisciplinary genetics research

Demographic and mental health assessments in the adolescent brain and cognitive development study: Updates and age-related trajectories. PMID:34742018
Using the PhenX Toolkit to Select Standard Measurement Protocols for Your Research Study. PMID:34038028
Preliminary analysis of low-level alcohol use and suicidality with children in the adolescent brain and cognitive development (ABCD) baseline cohort. PMID:33713937
Caffeine exposure in utero is associated with structural brain alterations and deleterious neurocognitive outcomes in 9-10 year old children. PMID:33529676
The Main and Interactive Associations between Demographic Factors and Psychopathology and Treatment Utilization in Youth: A Test of Intersectionality in the ABCD Study. PMID:32737734
Parental and social factors in relation to child psychopathology, behavior, and cognitive function. PMID:32102994
Pubertal development mediates the association between family environment and brain structure and function in childhood. PMID:31258099
Analyzing Real-World Use of Research Common Data Elements. PMID:30815101
Heterogeneous network embedding for identifying symptom candidate genes. PMID:30357378
Associations between 24 hour movement behaviours and global cognition in US children: a cross-sectional observational study. PMID:30268792
Demographic, physical and mental health assessments in the adolescent brain and cognitive development study: Rationale and description. PMID:29113758
Common Measures for National Institute of Mental Health Funded Research. PMID:26903402
From Data to Action: Neuroepidemiology Informs Implementation Research for Global Stroke Prevention and Treatment. PMID:26505615
Neuroinformatics Software Applications Supporting Electronic Data Capture, Management, and Sharing for the Neuroimaging Community. PMID:26267019
Using the PhenX Toolkit to Add Standard Measures to a Study. PMID:26132000
Clinical Data Element Ontology for Unified Indexing and Retrieval of Data Elements across Multiple Metadata Registries. PMID:25405066
Sharing behavioral data through a grid infrastructure using data standards. PMID:24076749
PhenDisco: phenotype discovery system for the database of genotypes and phenotypes. PMID:23989082
Quantifying diet for nutrigenomic studies. PMID:23642200
Next-generation analysis of cataracts: determining knowledge driven gene-gene interactions using Biofilter, and gene-environment interactions using the PhenX Toolkit. PMID:23424120
Harmonization and semantic annotation of data dictionaries from the Pharmacogenomics Research Network: a case study. PMID:23201637
Genetics and outcomes after traumatic brain injury (TBI): what do we know about pediatric TBI? PMID:23023254
The PhenX Toolkit pregnancy and birth collections. PMID:22954959
The success of pharmacogenomics in moving genetic association studies from bench to bedside: study design and implementation of precision medicine in the post-GWAS era. PMID:22923055
Physical activity and physical fitness: standardizing assessment with the PhenX Toolkit. PMID:22516489
Measuring alcohol consumption for genomic meta-analyses of alcohol intake: opportunities and challenges. PMID:22301922
Evaluating Phenotypic Data Elements for Genetics and Epidemiological Research: Experiences from the eMERGE and PhenX Network Projects. PMID:22211178
Pitfalls of merging GWAS data: lessons learned in the eMERGE network and quality control procedures to maintain high data quality. PMID:22125226
The NIDDK Central Repository at 8 years--ambition, revision, use and impact. PMID:21959867
The PhenX Toolkit: get the most from your measures. PMID:21749974
Realizing the promise of population biobanks: a new model for translation. PMID:21706184
Mapping clinical phenotype data elements to standardized metadata repositories and controlled terminologies: the eMERGE Network experience. PMID:21597104
Building a biomedical cyberinfrastructure for collaborative research. PMID:21521587
Grid-enabled measures: using Science 2.0 to standardize measures and share data. PMID:21521586
Data standards for clinical research data collection forms: current status and challenges. PMID:21486890
Gene-environment interplay in common complex diseases: forging an integrative model—recommendations from an NIH workshop. PMID:21308768
Charting a course for genomic medicine from base pairs to bedside. PMID:21307933
Quality, quantity and harmony: the DataSHaPER approach to integrating data across bioclinical studies. PMID:20813861
Application of genetic/genomic approaches to allergic disorders. PMID:20638111
PhenX measures for phenotyping rare genetic conditions PubMed citations: 2.

2 articles citing: PhenX measures for phenotyping rare genetic conditions

Using the PhenX Toolkit to Select Standard Measurement Protocols for Your Research Study. PMID:34038028
Research standardization tools: pregnancy measures in the PhenX Toolkit. PMID:28578176

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disease
metasource: Fairsharing.org
version: FAIRsharing.org: PhenX; PhenX Phenotypic Terms; DOI: https://doi.org/10.25504/FAIRsharing.y5jcwa; Last edited: Aug. 13, 2019, 4:35 p.m.; Last accessed: Jan 03 2022 7:14 p.m.

exposure
metasource: Fairsharing.org
version: FAIRsharing.org: PhenX; PhenX Phenotypic Terms; DOI: https://doi.org/10.25504/FAIRsharing.y5jcwa; Last edited: Aug. 13, 2019, 4:35 p.m.; Last accessed: Jan 03 2022 7:14 p.m.

phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: PhenX; PhenX Phenotypic Terms; DOI: https://doi.org/10.25504/FAIRsharing.y5jcwa; Last edited: Aug. 13, 2019, 4:35 p.m.; Last accessed: Jan 03 2022 7:14 p.m.

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PhenX Toolkit

Plant Trait Ontology

Children's Health Exposure Analysis Resource

Human Health Exposure Analysis Resource

Wheat Trait Ontology

Phenotypic QualiTy Ontology

TwinsUK

Comparative Toxicogenomics Database

Exposure Ontology

Human Phenotype Ontology

Sickle Cell Disease Ontology

UniMES

Resource of Asian Primary Immunodeficiency Diseases Phenotype Ontology

Animal Trait Ontology for Livestock

Phenotype eXchange Format

Biological and Environmental Research Ontology

Cellular Phenotype database

Reproductive trait and phenotype ontology

Odonate Phenotypic Database

CANJEM