MutDB
Names
More detailed information about this field from each metasource.
MutDB
metasource: Fairsharing.org
version: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:44.970020
mutdb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:44.970020
Names
More detailed information about this field from each metasource.
MutDB
metasource: Fairsharing.orgversion: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:44.970020
mutdb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:44.970020
Names
More detailed information about this field from each metasource.
MutDB
metasource: Fairsharing.orgversion: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:44.970020
mutdb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:44.970020
This source may no longer be available. No known URL could be resolved successfully.
The goal of MutDB is to annotate human variation data with protein structural information and other functionally relevant information, if available. The mutations are organized by gene. Click on the alphabet below to go alphabetically through the list of genes. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
Description
More detailed information about this field from each metasource.
The goal of MutDB is to annotate human variation data with protein structural information and other functionally relevant information, if available. The mutations are organized by gene. Click on the alphabet below to go alphabetically through the list of genes. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
metasource: Fairsharing.orgversion: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Predicted biochemical effects of human genetic variation: maping of SNPs on protein sequence and structure
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Database that associates protein structural information with mutations and polymorphisms in gene sequences. The data is derived from dbSNP and Swiss-Prot, and can be browsed by gene name or searched by keyword or by various identifiers.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:44.970020
Webpage:
http://mutdb.org/Webpage
More detailed information about this field from each metasource.
http://mutdb.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
http://www.mutdb.org/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:44.970020
Licence:
Name: Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0Licence name
More detailed information about this field from each metasource.
Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
metasource: Fairsharing.orgversion: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Licence URL
More detailed information about this field from each metasource.
http://opendatacommons.org/licenses/pddl/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
MutDB: annotating human variation with functionally relevant data
PMID: 14512363
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:44.970020
MutDB services: interactive structural analysis of mutation data
PMID: 15980479
metasource: Fairsharing.org
version: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:44.970020
MutDB: update on development of tools for the biochemical analysis of genetic variation
PMID: 17827212
metasource: Fairsharing.org
version: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications
More detailed information about this field from each metasource.
MutDB: annotating human variation with functionally relevant data
PMID: 14512363
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:44.970020
MutDB services: interactive structural analysis of mutation data
PMID: 15980479
metasource: Fairsharing.org
version: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:44.970020
MutDB: update on development of tools for the biochemical analysis of genetic variation
PMID: 17827212
metasource: Fairsharing.org
version: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
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MutDB: annotating human variation with functionally relevant data
PubMed citations: 19.
19 articles citing: MutDB: annotating human variation with functionally relevant data
DES-Mutation: System for Exploring Links of Mutations and Diseases. PMID:30190574
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework. PMID:29254494
G23D: Online tool for mapping and visualization of genomic variants on 3D protein structures. PMID:27565432
Practical Calling Approach for Exome Array-Based Genome-Wide Association Studies in Korean Population. PMID:26819946
AMASS: a database for investigating protein structures. PMID:24497503
Towards precision medicine: advances in computational approaches for the analysis of human variants. PMID:23962656
SNPdbe: constructing an nsSNP functional impacts database. PMID:22210871
Testing rare variants for association with diseases: a Bayesian marker selection approach. PMID:22034989
Meet me halfway: when genomics meets structural bioinformatics. PMID:21350909
Improved detection of rare genetic variants for diseases. PMID:21079782
PEPPI: a peptidomic database of human protein isoforms for proteomics experiments. PMID:20946618
SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry. PMID:19036792
coliSNP database server mapping nsSNPs on protein structures. PMID:17921498
MutDB: update on development of tools for the biochemical analysis of genetic variation. PMID:17827212
A survey of genomic properties for the detection of regulatory polymorphisms. PMID:17559298
PolyDoms: a whole genome database for the identification of non-synonymous coding SNPs with the potential to impact disease. PMID:17142238
SNPs3D: candidate gene and SNP selection for association studies. PMID:16551372
MutDB services: interactive structural analysis of mutation data. PMID:15980479
Sequence variation in G-protein-coupled receptors: analysis of single nucleotide polymorphisms. PMID:15784611 -
MutDB services: interactive structural analysis of mutation data
PubMed citations: 18.
18 articles citing: MutDB services: interactive structural analysis of mutation data
Association of intron microsatellite status and exon mutational profiles of TP53 in human colorectal cancer. PMID:31777536
Impact of genetic variation on three dimensional structure and function of proteins. PMID:28296894
Computational screening and molecular dynamic simulation of breast cancer associated deleterious non-synonymous single nucleotide polymorphisms in TP53 gene. PMID:25105660
The SAAP pipeline and database: tools to analyze the impact and predict the pathogenicity of mutations. PMID:23819919
CanProVar: a human cancer proteome variation database. PMID:20052754
Evaluation of probabilistic and logical inference for a SNP annotation system. PMID:20015478
Collection of variation causing disease--the Human Variome Project. PMID:19706360
Planning the human variome project: the Spain report. PMID:19306394
Next generation tools for the annotation of human SNPs. PMID:19181721
SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry. PMID:19036792
SNP@Promoter: a database of human SNPs (single nucleotide polymorphisms) within the putative promoter regions. PMID:18315851
coliSNP database server mapping nsSNPs on protein structures. PMID:17921498
MutDB: update on development of tools for the biochemical analysis of genetic variation. PMID:17827212
Structure SNP (StSNP): a web server for mapping and modeling nsSNPs on protein structures with linkage to metabolic pathways. PMID:17537826
RILM: a web-based resource to aid comparative and functional analysis of the insulin and IGF-1 receptor family. PMID:17318838
ProSAT2--Protein Structure Annotation Server. PMID:16845114
SNP@Domain: a web resource of single nucleotide polymorphisms (SNPs) within protein domain structures and sequences. PMID:16845090
SNPs3D: candidate gene and SNP selection for association studies. PMID:16551372 -
MutDB: update on development of tools for the biochemical analysis of genetic variation
PubMed citations: 18.
18 articles citing: MutDB: update on development of tools for the biochemical analysis of genetic variation
MAGPEL: an autoMated pipeline for inferring vAriant-driven Gene PanEls from the full-length biomedical literature. PMID:32703994
Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome. PMID:31199787
eGARD: Extracting associations between genomic anomalies and drug responses from text. PMID:29261751
Annotating Mutational Effects on Proteins and Protein Interactions: Designing Novel and Revisiting Existing Protocols. PMID:28188534
Protein-structure-guided discovery of functional mutations across 19 cancer types. PMID:27294619
High-performance web services for querying gene and variant annotation. PMID:27154141
StructMAn: annotation of single-nucleotide polymorphisms in the structural context. PMID:27150811
DiMeX: A Text Mining System for Mutation-Disease Association Extraction. PMID:27073839
Computational analysis of the mutations in BAP1, PBRM1 and SETD2 genes reveals the impaired molecular processes in renal cell carcinoma. PMID:26452128
Computational screening and molecular dynamic simulation of breast cancer associated deleterious non-synonymous single nucleotide polymorphisms in TP53 gene. PMID:25105660
MuPIT interactive: webserver for mapping variant positions to annotated, interactive 3D structures. PMID:23793516
MSV3d: database of human MisSense Variants mapped to 3D protein structure. PMID:22491796
Bioinformatics for personal genome interpretation. PMID:22247263
PEPPI: a peptidomic database of human protein isoforms for proteomics experiments. PMID:20946618
Mutation@A Glance: an integrative web application for analysing mutations from human genetic diseases. PMID:20360267
Bioinformatic tools for identifying disease gene and SNP candidates. PMID:20238089
In silico functional profiling of human disease-associated and polymorphic amino acid substitutions. PMID:20052762
Improved mutation tagging with gene identifiers applied to membrane protein stability prediction. PMID:19758467
Tags:
Tags
More detailed information about this field from each metasource.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
molecular structure
metasource: Fairsharing.org
version: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
mutation analysis
metasource: Fairsharing.org
version: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
human genes and diseases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
general human genetics databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
genetic variation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:44.970020
proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:44.970020
protein structure analysis
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:44.970020
gene structure
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:44.970020
Tags
More detailed information about this field from each metasource.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
molecular structure
metasource: Fairsharing.orgversion: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
mutation analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: MutDB; MutDB; DOI: https://doi.org/10.25504/FAIRsharing.pxm2h8; Last edited: July 7, 2021, 9:23 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
human genes and diseases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
general human genetics databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
genetic variation
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:44.970020
proteins
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:44.970020
protein structure analysis
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:44.970020
gene structure
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:44.970020
gene gene expression molecular structure mutation analysis protein structure human genes and diseases general human genetics genetic variation proteins protein structure analysis gene structure
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