Multi-Omics Metadata Checklist
Names
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Multi-Omics Metadata Checklist
metasource: Fairsharing.org
version: FAIRsharing.org: MOMDC; Multi-Omics Metadata Checklist; DOI: https://doi.org/10.25504/FAIRsharing.wjqnt4; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
MOMDC
metasource: Fairsharing.org
version: FAIRsharing.org: MOMDC; Multi-Omics Metadata Checklist; DOI: https://doi.org/10.25504/FAIRsharing.wjqnt4; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Names
More detailed information about this field from each metasource.
Multi-Omics Metadata Checklist
metasource: Fairsharing.orgversion: FAIRsharing.org: MOMDC; Multi-Omics Metadata Checklist; DOI: https://doi.org/10.25504/FAIRsharing.wjqnt4; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
MOMDC
metasource: Fairsharing.orgversion: FAIRsharing.org: MOMDC; Multi-Omics Metadata Checklist; DOI: https://doi.org/10.25504/FAIRsharing.wjqnt4; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Names
More detailed information about this field from each metasource.
Multi-Omics Metadata Checklist
metasource: Fairsharing.orgversion: FAIRsharing.org: MOMDC; Multi-Omics Metadata Checklist; DOI: https://doi.org/10.25504/FAIRsharing.wjqnt4; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
MOMDC
metasource: Fairsharing.orgversion: FAIRsharing.org: MOMDC; Multi-Omics Metadata Checklist; DOI: https://doi.org/10.25504/FAIRsharing.wjqnt4; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
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We have created a Multi-Omics Metadata checklist to ensure consistent data quality and comprehensive meta-data. We used previously developed data submission policies for PRIDE and GEO as starting points for gathering information on the experimental design, experimental protocols, instrumentation, data processing and analysis methods. Through DELSA community outreach and the Advisory Committee, we will continue to refine and finalize the Multi-Omics Metadata checklist using a combination of reputable ontologies available through Open Biological and Biomedical Ontologies, best community practices, and developments from the NSF-funded Research Data Alliance and GSC.
Description
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We have created a Multi-Omics Metadata checklist to ensure consistent data quality and comprehensive meta-data. We used previously developed data submission policies for PRIDE and GEO as starting points for gathering information on the experimental design, experimental protocols, instrumentation, data processing and analysis methods. Through DELSA community outreach and the Advisory Committee, we will continue to refine and finalize the Multi-Omics Metadata checklist using a combination of reputable ontologies available through Open Biological and Biomedical Ontologies, best community practices, and developments from the NSF-funded Research Data Alliance and GSC.
metasource: Fairsharing.orgversion: FAIRsharing.org: MOMDC; Multi-Omics Metadata Checklist; DOI: https://doi.org/10.25504/FAIRsharing.wjqnt4; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Webpage:
http://kolkerlab.org/publications/multi-omics-metadata-checklistWebpage
More detailed information about this field from each metasource.
http://kolkerlab.org/publications/multi-omics-metadata-checklist
metasource: Fairsharing.orgversion: FAIRsharing.org: MOMDC; Multi-Omics Metadata Checklist; DOI: https://doi.org/10.25504/FAIRsharing.wjqnt4; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
MOPED 2.5--an integrated multi-omics resource: multi-omics profiling expression database now includes transcriptomics data
PMID: 24910945
metasource: Fairsharing.org
version: FAIRsharing.org: MOMDC; Multi-Omics Metadata Checklist; DOI: https://doi.org/10.25504/FAIRsharing.wjqnt4; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Metadata Checklist for the Integrated Personal Omics Study: Proteomics and Metabolomics Experiments
PMID: 27447252
metasource: Fairsharing.org
version: FAIRsharing.org: MOMDC; Multi-Omics Metadata Checklist; DOI: https://doi.org/10.25504/FAIRsharing.wjqnt4; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
OMICS studies: How about metadata checklist and data publications?
PMID: 24494788
metasource: Fairsharing.org
version: FAIRsharing.org: MOMDC; Multi-Omics Metadata Checklist; DOI: https://doi.org/10.25504/FAIRsharing.wjqnt4; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Publications
More detailed information about this field from each metasource.
MOPED 2.5--an integrated multi-omics resource: multi-omics profiling expression database now includes transcriptomics data
PMID: 24910945
metasource: Fairsharing.org
version: FAIRsharing.org: MOMDC; Multi-Omics Metadata Checklist; DOI: https://doi.org/10.25504/FAIRsharing.wjqnt4; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
Metadata Checklist for the Integrated Personal Omics Study: Proteomics and Metabolomics Experiments
PMID: 27447252
metasource: Fairsharing.org
version: FAIRsharing.org: MOMDC; Multi-Omics Metadata Checklist; DOI: https://doi.org/10.25504/FAIRsharing.wjqnt4; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
OMICS studies: How about metadata checklist and data publications?
PMID: 24494788
metasource: Fairsharing.org
version: FAIRsharing.org: MOMDC; Multi-Omics Metadata Checklist; DOI: https://doi.org/10.25504/FAIRsharing.wjqnt4; Last edited: Jan. 8, 2019, 1:36 p.m.; Last accessed: Jan 03 2022 7:14 p.m.
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MOPED 2.5--an integrated multi-omics resource: multi-omics profiling expression database now includes transcriptomics data
PubMed citations: 18.
18 articles citing: MOPED 2.5--an integrated multi-omics resource: multi-omics profiling expression database now includes transcriptomics data
Differential Interactome Proposes Subtype-Specific Biomarkers and Potential Therapeutics in Renal Cell Carcinomas. PMID:33672271
Multi-omics data integration considerations and study design for biological systems and disease. PMID:33347526
Proteomics and Metabolomics Approaches towards a Functional Insight onto AUTISM Spectrum Disorders: Phenotype Stratification and Biomarker Discovery. PMID:32872562
Synthetic analogues of 2-oxo acids discriminate metabolic contribution of the 2-oxoglutarate and 2-oxoadipate dehydrogenases in mammalian cells and tissues. PMID:32024885
Predicting the evolution of Escherichia coli by a data-driven approach. PMID:30177705
Automated multigroup outlier identification in molecular high-throughput data using bagplots and gemplots. PMID:28464790
Establishment of a integrative multi-omics expression database CKDdb in the context of chronic kidney disease (CKD). PMID:28079125
Multi-omics integration accurately predicts cellular state in unexplored conditions for Escherichia coli. PMID:27713404
A Transcriptomic Biomarker to Quantify Systemic Inflammation in Sepsis - A Prospective Multicenter Phase II Diagnostic Study. PMID:27211554
Brucella melitensis and Mycobacterium tuberculosis depict overlapping gene expression patterns induced in infected THP-1 macrophages. PMID:27175205
Genic insights from integrated human proteomics in GeneCards. PMID:27048349
Computational Systems Biology of Psoriasis: Are We Ready for the Age of Omics and Systems Biomarkers? PMID:26480058
Multidimensional proteomics for cell biology. PMID:25857810
The promise of multi-omics and clinical data integration to identify and target personalized healthcare approaches in autism spectrum disorders. PMID:25831060
Version 4.0 of PaxDb: Protein abundance data, integrated across model organisms, tissues, and cell-lines. PMID:25656970
Beyond protein expression, MOPED goes multi-omics. PMID:25404128
Making proteomics data accessible and reusable: current state of proteomics databases and repositories. PMID:25158685
Metadata checklist: identification of CHI3L1 and MASP2 as a biomarker pair for liver cancer through integrative secretome and transcriptome analysis. PMID:25133456 -
Metadata Checklist for the Integrated Personal Omics Study: Proteomics and Metabolomics Experiments
PubMed citations: 2.
2 articles citing: Metadata Checklist for the Integrated Personal Omics Study: Proteomics and Metabolomics Experiments
Data Integration Challenges for Machine Learning in Precision Medicine. PMID:35145977
MOPED enables discoveries through consistently processed proteomics data. PMID:24350770 -
OMICS studies: How about metadata checklist and data publications?
PubMed citations: 1.
1 articles citing: OMICS studies: How about metadata checklist and data publications?
The promise of multi-omics and clinical data integration to identify and target personalized healthcare approaches in autism spectrum disorders. PMID:25831060
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