A reference methylome database for different organisms that is created from public BS-seq datasets.
epigenomics epigenetics
Database engine for comparing metagenomic data at massive scale. It first obtains the sequence signature of metagenomes and organizes them as points in high dimensional space.
>>>!!! <<< The Epigenomics database was retired on June 1, 2016. All epigenomics data are available in our GEO resource https://www.ncbi.nlm.nih.gov/geo >>> !!! <<< The Epigenomics database provid ...
This project provides open-source software that is developed in Laboratory of Systems Biology at Institute of Cybernetics. The project is created to publish the software, this includes distributing th ...
The Heart Disease-related Non-coding RNAs Database (HDncRNA) provides information about common heart diseases and their related noncoding RNAs. The HDncRNA database contains manually annotated associa ...
ProThermDB is a database for proteins and mutants with data on protein stability, an increase of 84% from the previous version. It contains several thermodynamic parameters such as melting temperature ...
Cancer drivers at non-coding regions
The Software Ontology (SWO) is a resource for describing software tools, their types, tasks, versions, provenance and associated data. SWO also covers software manufacturer, input and output data type ...
ourproject.org is a free content repository, which has translated the Free Software initiative to other fields. It includes content beyond software projects, allowing any kind of social, cultural or a ...
The Clinical MetaData Ontology is designed to be used to classify Common Data Elements (CDEs) from different studies and clinical documents. CDEs can be efficiently searched, shared and reused by usin ...
PlanExp is an intuitive integration of complex RNA-seq datasets with planarian omics resources.
ReMap is an integrative analysis of transcription factor ChIP-seq experiments publicly available, merged with the Encode dataset. The resource is an extensive regulatory catalogue of transcription fac ...
Database for comparative genome analysis of 15 strains of the genus Streptococcus
DriverDB, a database that incorporates >9500 cancer-related RNA-seq datasets and >7000 more exome-seq datasets, in addition to annotation databases and published bioinformatics algorithms dedicated to ...
Assembled partial genomes for ~250 eukaryotic organisms
A database for exploring N6-methyladenosine methylome. REPIC (RNA Epitranscriptome Collection) is a database dedicated to provide a new resource to investigate potential functions and mechanisms of N ...
Kaggle Datasets is a public open data platform which combines data, users, discussions, and software. Datasets can be searched, bookmarked and explored via Kernels and discussions. All types of data a ...
The Adaptive Immune Receptor Repertoire (AIRR) Software Guidelines were created by the AIRR Software Working Group to promote standards for AIRR software tools and resources in order to enable rigorou ...
SHOGoiN Cell Database is a repository for accumulating and integrating diverse human cell information to support a wide range of cell research at the single-cell resolution. It is an extension of the ...
MetAMDB is a software/database for the analysis of metabolic models and specifically the work with atom mappings.
The Common Anatomy Reference Ontology (CARO) is being developed to facilitate interoperability between existing anatomy ontologies for different species, and will provide a template for building new a ...