LinkProt: A database of proteins with topological links
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LinkProt: A database of proteins with topological links
metasource: Fairsharing.org
version: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
LinkProt
metasource: Fairsharing.org
version: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
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LinkProt: A database of proteins with topological links
metasource: Fairsharing.orgversion: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
LinkProt
metasource: Fairsharing.orgversion: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
LinkProt: A database of proteins with topological links
metasource: Fairsharing.orgversion: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
LinkProt
metasource: Fairsharing.orgversion: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
LinkProt collects information about protein chains and complexes that form links. LinkProt detects deterministic links (with loops closed by cysteine), and determines likelihood of formation of links in networks of protein chains called MacroLinks. Links are presented graphically in an intuitive way, using tools that involves surfaces of minimal area spanned on closed loops. The database presents extensive information about biological functions of proteins with links and enables users to analyze new structures.
Description
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LinkProt collects information about protein chains and complexes that form links. LinkProt detects deterministic links (with loops closed by cysteine), and determines likelihood of formation of links in networks of protein chains called MacroLinks. Links are presented graphically in an intuitive way, using tools that involves surfaces of minimal area spanned on closed loops. The database presents extensive information about biological functions of proteins with links and enables users to analyze new structures.
metasource: Fairsharing.orgversion: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Topologically non-trivial protein structures made by single, double, or triple chains
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://linkprot.cent.uw.edu.pl/Webpage
More detailed information about this field from each metasource.
http://linkprot.cent.uw.edu.pl/
metasource: Fairsharing.orgversion: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
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LinkProt: a database collecting information about biological links
PMID: 27794552
metasource: Fairsharing.org
version: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/nar/1932
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
LinkProt: a database collecting information about biological links
PMID: 27794552
metasource: Fairsharing.org
version: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/nar/1932
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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LinkProt: a database collecting information about biological links
PubMed citations: 12.
12 articles citing: LinkProt: a database collecting information about biological links
Lasso Proteins-Unifying Cysteine Knots and Miniproteins. PMID:34833285
Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor. PMID:34648493
Topoly: Python package to analyze topology of polymers. PMID:32935829
Genus for biomolecules. PMID:31584078
Defining and detecting links in chromosomes. PMID:31409805
Mechanical Pulling of Linked Ring Polymers: Elastic Response and Link Localisation. PMID:30971003
To Tie or Not to Tie? That Is the Question. PMID:30965758
Topological Models for Open-Knotted Protein Chains Using the Concepts of Knotoids and Bonded Knotoids. PMID:30965745
KnotProt 2.0: a database of proteins with knots and other entangled structures. PMID:30508159
KnotGenome: a server to analyze entanglements of chromosomes. PMID:29905836
Physical Links: defining and detecting inter-chain entanglement. PMID:28442725
Topological knots and links in proteins. PMID:28280100 - http://dx.doi.org/10.1093/nar/1932
Tags:
Tags
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protein
metasource: Fairsharing.org
version: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein structure
metasource: Fairsharing.org
version: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
protein-containing complex
metasource: Fairsharing.org
version: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
structure databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein structure
metasource: Fairsharing.orgversion: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
protein-containing complex
metasource: Fairsharing.orgversion: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: LinkProt; LinkProt: A database of proteins with topological links; DOI: https://doi.org/10.25504/FAIRsharing.tw6ecm; Last edited: Jan. 3, 2020, 3:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
structure databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
protein protein structure protein-containing complex structure structure
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