KaPPA-View

Names

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KaPPA-View

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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KaPPA-View4

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:29.244686

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kappa-view4

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:29.244686

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Other names: KaPPA-View4, kappa-view4

Kazusa Plant Pathway Viewer

Webpage:

Publications:

Publications

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KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data
PMID: 21097783

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:29.244686

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http://nar.oxfordjournals.org/content/39/suppl_1/D677

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data PubMed citations: 22.

  22 articles citing: KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data

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  Systematic Multi-Omics Integration (MOI) Approach in Plant Systems Biology. PMID:32754171

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  An integration of phenotypic and transcriptomic data analysis reveals yield-related hub genes in Jatropha curcas inflorescence. PMID:30240391

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  A gene co-expression network model identifies yield-related vicinity networks in Jatropha curcas shoot system. PMID:29907786

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  From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics. PMID:28520864

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  Central Metabolic Responses to Ozone and Herbivory Affect Photosynthesis and Stomatal Closure. PMID:27758847

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  Animal-Free Chemical Safety Assessment. PMID:27493630

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  Functional classification of rice flanking sequence tagged genes using MapMan terms and global understanding on metabolic and regulatory pathways affected by dxr mutant having defects in light response. PMID:27076183

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  GC-MS metabolic profiling of Cabernet Sauvignon and Merlot cultivars during grapevine berry development and network analysis reveals a stage- and cultivar-dependent connectivity of primary metabolites. PMID:26848290

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  Computational Metabolomics Operations at BioCyc.org. PMID:26011592

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  Multiomics in grape berry skin revealed specific induction of the stilbene synthetic pathway by ultraviolet-C irradiation. PMID:25761715

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  Integrated network analysis and effective tools in plant systems biology. PMID:25408696

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  Tools and databases of the KOMICS web portal for preprocessing, mining, and dissemination of metabolomics data. PMID:24949426

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  Integrated LC-MS/MS system for plant metabolomics. PMID:24688692

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  Lignin, mitochondrial family, and photorespiratory transporter classification as case studies in using co-expression, co-response, and protein locations to aid in identifying transport functions. PMID:24672529

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  Precise sequential DNA ligation on a solid substrate: solid-based rapid sequential ligation of multiple DNA molecules. PMID:23897972

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  Recent progress in the development of metabolome databases for plant systems biology. PMID:23577015

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  UniVIO: a multiple omics database with hormonome and transcriptome data from rice. PMID:23314752

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  Co-expression and co-responses: within and beyond transcription. PMID:23162560

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  Recent advances of metabolomics in plant biotechnology. PMID:22308170

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  Exploring tomato gene functions based on coexpression modules using graph clustering and differential coexpression approaches. PMID:22307966

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  Identification of cis-acting promoter elements in cold- and dehydration-induced transcriptional pathways in Arabidopsis, rice, and soybean. PMID:22184637

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  Advances in omics and bioinformatics tools for systems analyses of plant functions. PMID:22156726
• http://nar.oxfordjournals.org/content/39/suppl_1/D677

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Tags

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metabolic and signaling pathways

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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metabolic pathways

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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molecular interactions, pathways and networks

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:29.244686

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endocrinology and metabolism

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:29.244686

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mapping

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:29.244686

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gene expression

metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:29.244686

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metabolic and signaling pathways metabolic and signaling pathways molecular interactions, pathways and networks endocrinology and metabolism mapping gene expression