Interaction Network Ontology
Names
More detailed information about this field from each metasource.
Interaction Network Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1.13 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/INO
INO
metasource: Fairsharing.org
version: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1.13 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/INO
Names
More detailed information about this field from each metasource.
Interaction Network Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1.13 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/INO
INO
metasource: Fairsharing.orgversion: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1.13 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/INO
Names
More detailed information about this field from each metasource.
Interaction Network Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1.13 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/INO
INO
metasource: Fairsharing.orgversion: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1.13 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/INO
The Interaction Network Ontology (INO) aims to standardize interaction network annotation, integrate various interaction network data, and support computer-assisted reasoning. It models general interactions (e.g., molecular interactions) and interaction networks (e.g., Bayesian network). INO is aligned with the Basic Formal Ontology (BFO) and imports terms from 10 other existing ontologies, and includes over 500 terms. In terms of interaction-related terms, INO imports and aligns PSI-MI and GO interaction terms and includes over 100 newly generated ontology terms.
Description
More detailed information about this field from each metasource.
The Interaction Network Ontology (INO) aims to standardize interaction network annotation, integrate various interaction network data, and support computer-assisted reasoning. It models general interactions (e.g., molecular interactions) and interaction networks (e.g., Bayesian network). INO is aligned with the Basic Formal Ontology (BFO) and imports terms from 10 other existing ontologies, and includes over 500 terms. In terms of interaction-related terms, INO imports and aligns PSI-MI and GO interaction terms and includes over 100 newly generated ontology terms.
metasource: Fairsharing.orgversion: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
The Interaction Network Ontology (INO) is an ontology in the domain of interactions and interaction networks. INO represents general and species-neutral types of interactions and interaction networks, and their related elements and relations. INO is a community-driven ontology, aligns with BFO, and is developed by following the OBO Foundry principles.
metasource: Biontology / Bioportalversion: 1.1.13 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/INO
Webpage:
https://sourceforge.net/projects/ino/Webpage
More detailed information about this field from each metasource.
https://sourceforge.net/projects/ino/
metasource: Fairsharing.orgversion: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
https://github.com/INO-ontology/ino
metasource: Biontology / Bioportalversion: 1.1.13 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/INO
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology
PMID: 21624163
metasource: Fairsharing.org
version: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions
PMID: 25785184
metasource: Fairsharing.org
version: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1.13 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/INO
The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature
PMID: 28031747
metasource: Fairsharing.org
version: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications
More detailed information about this field from each metasource.
Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology
PMID: 21624163
metasource: Fairsharing.org
version: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions
PMID: 25785184
metasource: Fairsharing.org
version: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 1.1.13 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/INO
The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature
PMID: 28031747
metasource: Fairsharing.org
version: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
-
Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology
PubMed citations: 41.
41 articles citing: Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology
Cov19VaxKB: A Web-based Integrative COVID-19 Vaccine Knowledge Base. PMID:34981039
CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature. PMID:34454610
Precision omics data integration and analysis with interoperable ontologies and their application for COVID-19 research. PMID:34159360
A systematic review on literature-based discovery workflow. PMID:33816888
VaximmutorDB: A Web-Based Vaccine Immune Factor Database and Its Application for Understanding Vaccine-Induced Immune Mechanisms. PMID:33777032
CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis. PMID:32533075
Standards-based Semantic Integration of Manufacturing Information: Past, Present, and Future. PMID:32116404
VIO: ontology classification and study of vaccine responses given various experimental and analytical conditions. PMID:31865910
The Ontology of Biological and Clinical Statistics (OBCS)-based statistical method standardization and meta-analysis of host responses to yellow fever vaccines. PMID:30034908
Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs. PMID:29880031
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability. PMID:29329592
Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses. PMID:29322930
Ontology-based systematical representation and drug class effect analysis of package insert-reported adverse events associated with cardiovascular drugs used in China. PMID:29061976
Ontology-based literature mining of E. coli vaccine-associated gene interaction networks. PMID:28288685
Automatic query generation using word embeddings for retrieving passages describing experimental methods. PMID:28077568
The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature. PMID:28031747
Integrative representations and analyses of vaccine-induced intended protective immunity and unintended adverse events using ontology-based and theory-guided approaches. PMID:27868103
The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis. PMID:27627881
Community-based Ontology Development, Annotation and Discussion with MediaWiki extension Ontokiwi and Ontokiwi-based Ontobedia. PMID:27570653
Ontology-based Vaccine and Drug Adverse Event Representation and Theory-guided Systematic Causal Network Analysis toward Integrative Pharmacovigilance Research. PMID:27458549
Vaxar: A Web-Based Database of Laboratory Animal Responses to Vaccinations and Its Application in the Meta-Analysis of Different Animal Responses to Tuberculosis Vaccinations. PMID:27053566
Literature Mining and Ontology based Analysis of Host-Brucella Gene-Gene Interaction Network. PMID:26696993
Ontology-based representation and analysis of host-Brucella interactions. PMID:26445639
Vaxvec: The first web-based recombinant vaccine vector database and its data analysis. PMID:26403370
Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns. PMID:25785185
Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions. PMID:25785184
Overview of computational vaccinology: vaccine development through information technology. PMID:25534541
DNAVaxDB: the first web-based DNA vaccine database and its data analysis. PMID:25104313
The ontology of genetic susceptibility factors (OGSF) and its application in modeling genetic susceptibility to vaccine adverse events. PMID:24963371
Ontology-supported research on vaccine efficacy, safety and integrative biological networks. PMID:24909153
Vaccine adjuvant informatics: from data integration and analysis to rational vaccine adjuvant design. PMID:24550916
The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines. PMID:24279920
Updates on the web-based VIOLIN vaccine database and analysis system. PMID:24259431
Network-based analysis of vaccine-related associations reveals consistent knowledge with the vaccine ontology. PMID:24209834
Genome-wide prediction of vaccine targets for human herpes simplex viruses using Vaxign reverse vaccinology. PMID:23514126
Computational vaccinology and the ICoVax 2012 workshop. PMID:23514034
Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining. PMID:23256563
Systematic annotation and analysis of "virmugens"-virulence factors whose mutants can be used as live attenuated vaccines. PMID:23219434
Ontology-based Brucella vaccine literature indexing and systematic analysis of gene-vaccine association network. PMID:21871085
Emerging vaccine informatics. PMID:21772787
Selected papers from the 13th Annual Bio-Ontologies Special Interest Group Meeting. PMID:21624154 -
Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions
PubMed citations: 16.
16 articles citing: Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions
ICEO, a biological ontology for representing and analyzing bacterial integrative and conjugative elements. PMID:35058462
Precision omics data integration and analysis with interoperable ontologies and their application for COVID-19 research. PMID:34159360
A 2018 workshop: vaccine and drug ontology studies (VDOS 2018). PMID:31865905
Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels. PMID:31865904
Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs. PMID:29880031
MIRO: guidelines for minimum information for the reporting of an ontology. PMID:29347969
BELMiner: adapting a rule-based relation extraction system to extract biological expression language statements from bio-medical literature evidence sentences. PMID:28365720
A Review of Recent Advancement in Integrating Omics Data with Literature Mining towards Biomedical Discoveries. PMID:28331849
Ontology-based literature mining of E. coli vaccine-associated gene interaction networks. PMID:28288685
Automatic query generation using word embeddings for retrieving passages describing experimental methods. PMID:28077568
The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature. PMID:28031747
Integrative representations and analyses of vaccine-induced intended protective immunity and unintended adverse events using ontology-based and theory-guided approaches. PMID:27868103
Ontology-based Vaccine and Drug Adverse Event Representation and Theory-guided Systematic Causal Network Analysis toward Integrative Pharmacovigilance Research. PMID:27458549
Biomolecular Relationships Discovered from Biological Labyrinth and Lost in Ocean of Literature: Community Efforts Can Rescue Until Automated Artificial Intelligence Takes Over. PMID:27066067
Vaccine and Drug Ontology Studies (VDOS 2014). PMID:26918107
Literature Mining and Ontology based Analysis of Host-Brucella Gene-Gene Interaction Network. PMID:26696993 -
The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature
PubMed citations: 5.
5 articles citing: The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature
Precision omics data integration and analysis with interoperable ontologies and their application for COVID-19 research. PMID:34159360
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine. PMID:30689846
BioCreative VI Precision Medicine Track system performance is constrained by entity recognition and variations in corpus characteristics. PMID:30576491
BIOSSES: a semantic sentence similarity estimation system for the biomedical domain. PMID:28881973
Ontology-based literature mining of E. coli vaccine-associated gene interaction networks. PMID:28288685
Tags:
Tags
More detailed information about this field from each metasource.
molecular interaction
metasource: Fairsharing.org
version: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
network model
metasource: Fairsharing.org
version: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
More detailed information about this field from each metasource.
molecular interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
network model
metasource: Fairsharing.orgversion: FAIRsharing.org: INO; Interaction Network Ontology; DOI: https://doi.org/10.25504/FAIRsharing.mm72as; Last edited: Aug. 7, 2019, 2:47 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
molecular interaction network model
Need help integrating and/or managing biomedical data?