Large-scale regulatory and signaling network assembly through linked open data. 
 PMID:33459761
                                    
                                
                                    Using set theory to reduce redundancy in pathway sets. 
 PMID:30340461
                                    
                                
                                    Computational dynamic approaches for temporal omics data with applications to systems medicine. 
 PMID:28638442
                                    
                                
                                    miRTar2GO: a novel rule-based model learning method for cell line specific microRNA target prediction that integrates Ago2 CLIP-Seq and validated microRNA-target interaction data. 
 PMID:27903911
                                    
                                
                                    Databases and tools for constructing signal transduction networks in cancer. 
 PMID:27502015
                                    
                                
                                    MONGKIE: an integrated tool for network analysis and visualization for multi-omics data. 
 PMID:26987515
                                    
                                
                                    Gene-based and pathway-based genome-wide association study of alcohol dependence. 
 PMID:26120261
                                    
                                
                                    PathCards: multi-source consolidation of human biological pathways. 
 PMID:25725062
                                    
                                
                                    Comparison of human cell signaling pathway databases--evolution, drawbacks and challenges. 
 PMID:25632107
                                    
                                
                                    ReNE: a cytoscape plugin for regulatory network enhancement. 
 PMID:25541727
                                    
                                
                                    Short-term airborne particulate matter exposure alters the epigenetic landscape of human genes associated with the mitogen-activated protein kinase network: a cross-sectional study. 
 PMID:25395096
                                    
                                
                                    Integrated pathway clusters with coherent biological themes for target prioritisation. 
 PMID:24918583
                                    
                                
                                    Pathway-driven discovery of rare mutational impact on cancer. 
 PMID:24883302
                                    
                                
                                    Using biological pathway data with paxtools. 
 PMID:24068901
                                    
                                
                                    Functional characterization of motif sequences under purifying selection. 
 PMID:23303791
                                    
                                
                                    Pathway Distiller - multisource biological pathway consolidation. 
 PMID:23134636
                                    
                                
                                    IPAD: the Integrated Pathway Analysis Database for Systematic Enrichment Analysis. 
 PMID:23046449
                                    
                                
                                    Dynamical systems approach to endothelial heterogeneity. 
 PMID:22723222
                                    
                                
                                    Context-specific protein network miner--an online system for exploring context-specific protein interaction networks from the literature. 
 PMID:22493694