Grape Database
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Database which provides several ways to access to the grape genomic data: as a blast search page, a genome browser and a direct link to download the data.
Description
More detailed information about this field from each metasource.
Database which provides several ways to access to the grape genomic data: as a blast search page, a genome browser and a direct link to download the data.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:28.791228
Webpage:
http://genomes.cribi.unipd.it/grape/Webpage
More detailed information about this field from each metasource.
http://genomes.cribi.unipd.it/grape/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:28.791228
Publications:
Publications
More detailed information about this field from each metasource.
A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype
PMID: 24739459
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:28.791228
Publications
More detailed information about this field from each metasource.
A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype
PMID: 24739459
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:28.791228
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A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype
PubMed citations: 120.
120 articles citing: A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype
Extent of wild-to-crop interspecific introgression in grapevine (Vitis vinifera) as a consequence of resistance breeding and implications for the crop species definition. PMID:35039824
Multi-dimensional leaf phenotypes reflect root system genotype in grafted grapevine over the growing season. PMID:34966928
The genomes of 204 Vitis vinifera accessions reveal the origin of European wine grapes. PMID:34934047
Severe Stunting Symptoms upon Nepovirus Infection Are Reminiscent of a Chronic Hypersensitive-like Response in a Perennial Woody Fruit Crop. PMID:34834945
RNA-seq Analysis Reveals Alternative Splicing Under Heat Stress in Rainbow Trout (Oncorhynchus mykiss). PMID:34787764
Alternative splicing during fruit development among fleshy fruits. PMID:34702184
Alternative splicing regulation appears to play a crucial role in grape berry development and is also potentially involved in adaptation responses to the environment. PMID:34696712
Elevated transcription of transposable elements is accompanied by het-siRNA-driven de novo DNA methylation in grapevine embryogenic callus. PMID:34544372
Fatty Acid Desaturases: Uncovering Their Involvement in Grapevine Defence against Downy Mildew. PMID:34067363
A dynamic intron retention program regulates the expression of several hundred genes during pollen meiosis. PMID:34019149
Molecular Tools for Adapting Viticulture to Climate Change. PMID:33643361
Combined Metabolite and Transcriptome Profiling Reveals the Norisoprenoid Responses in Grape Berries to Abscisic Acid and Synthetic Auxin. PMID:33572582
Mining Grapevine Downy Mildew Susceptibility Genes: A Resource for Genomics-Based Breeding and Tailored Gene Editing. PMID:33525704
Functional conservation of the grapevine candidate gene INNER NO OUTER for ovule development and seed formation. PMID:33518713
The Grapevine E3 Ubiquitin Ligase VriATL156 Confers Resistance against the Downy Mildew Pathogen Plasmopara viticola. PMID:33477914
Candidate genes and SNPs associated with stomatal conductance under drought stress in Vitis. PMID:33407127
RNA-Seq Time Series of Vitis vinifera Bud Development Reveals Correlation of Expression Patterns with the Local Temperature Profile. PMID:33198137
Portuguese wild grapevine genome re-sequencing (Vitis vinifera sylvestris). PMID:33149248
Alternative Splicing Enhances the Transcriptome Complexity of Liriodendron chinense. PMID:33072153
Plastid transit peptides-where do they come from and where do they all belong? Multi-genome and pan-genomic assessment of chloroplast transit peptide evolution. PMID:32913678
Molecular memory of Flavescence dorée phytoplasma in recovering grapevines. PMID:32821409
Two-omics data revealed commonalities and differences between Rpv12- and Rpv3-mediated resistance in grapevine. PMID:32699241
VviERF6Ls: an expanded clade in Vitis responds transcriptionally to abiotic and biotic stresses and berry development. PMID:32646368
Genome-Scale Characterization of Predicted Plastid-Targeted Proteomes in Higher Plants. PMID:32427841
Discovering the bacteriome of Vitis vinifera cv. Pinot Noir in a conventionally managed vineyard. PMID:32296119
Grape-RNA: A Database for the Collection, Evaluation, Treatment, and Data Sharing of Grape RNA-Seq Datasets. PMID:32188014
Novel Aspects on The Interaction Between Grapevine and Plasmopara viticola: Dual-RNA-Seq Analysis Highlights Gene Expression Dynamics in The Pathogen and The Plant During The Battle For Infection. PMID:32121150
Drought stress modulates cuticular wax composition of the grape berry. PMID:31985780
Quantitative Trait Locus Analysis of Leaf Morphology Indicates Conserved Shape Loci in Grapevine. PMID:31803199
The Aquilegia genome reveals a hybrid origin of core eudicots. PMID:31779695
A QTL associated with leaf trichome traits has a major influence on the abundance of the predatory mite Typhlodromus pyri in a hybrid grapevine population. PMID:31645947
Tissue-specific mouse mRNA isoform networks. PMID:31562339
Plant and fungus transcriptomic data from grapevine berries undergoing artificially-induced noble rot caused by Botrytis cinerea. PMID:31304217
Characterization of genes and alleles involved in the control of flowering time in grapevine. PMID:31269026
Many rice genes are differentially spliced between roots and shoots but cytokinin has minimal effect on splicing. PMID:31245776
Transcriptome profiles of three Muscat table grape cultivars to dissect the mechanism of terpene biosynthesis. PMID:31197176
Expanding Alternative Splicing Identification by Integrating Multiple Sources of Transcription Data in Tomato. PMID:31191588
Extensive changes in gene expression and alternative splicing due to homoeologous exchange in rice segmental allopolyploids. PMID:31098756
Flooding Responses on Grapevine: A Physiological, Transcriptional, and Metabolic Perspective. PMID:30972087
Spaceflight-induced alternative splicing during seedling development in Arabidopsis thaliana. PMID:30963109
Characterization and Cloning of Grape Circular RNAs Identified the Cold Resistance-Related Vv-circATS1. PMID:30962290
Transcriptomics of the grape berry shrivel ripening disorder. PMID:30941542
The Rpv3-3 Haplotype and Stilbenoid Induction Mediate Downy Mildew Resistance in a Grapevine Interspecific Population. PMID:30894868
Metabolomic and transcriptomic changes underlying cold and anaerobic stresses after storage of table grapes. PMID:30814549
Comparative transcriptomics analysis uncovers alternative splicing events and molecular markers in cabbage (Brassica oleracea L.). PMID:30771045
Swift metabolite changes and leaf shedding are milestones in the acclimation process of grapevine under prolonged water stress. PMID:30744556
Iso-Seq Allows Genome-Independent Transcriptome Profiling of Grape Berry Development. PMID:30642874
Genome-wide identification and comparative analysis of alternative splicing across four legume species. PMID:30603789
The interplay between membrane lipids and phospholipase A family members in grapevine resistance against Plasmopara viticola. PMID:30266912
Unique resistance traits against downy mildew from the center of origin of grapevine (Vitis vinifera). PMID:30131589
High Quality de Novo Transcriptome Assembly of Croton tiglium. PMID:30027092
Increased Alternative Splicing as a Host Response to Edwardsiella ictaluri Infection in Catfish. PMID:30014301
Genomic signatures of different adaptations to environmental stimuli between wild and cultivated Vitis vinifera L. PMID:29977570
Transcriptome analysis of alternative splicing in peanut (Arachis hypogaea L.). PMID:29973157
Annotation, classification, genomic organization and expression of the Vitis vinifera CYPome. PMID:29953551
Characterization of the ABA Receptor VlPYL1 That Regulates Anthocyanin Accumulation in Grape Berry Skin. PMID:29868057
The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11. PMID:29853599
Identification and characterization of evolutionarily conserved alternative splicing events in a mangrove genus Sonneratia. PMID:29535339
Capturing the Alternative Cleavage and Polyadenylation Sites of 14 NAC Genes in Populus Using a Combination of 3'-RACE and High-Throughput Sequencing. PMID:29518015
Intron retention in viruses and cellular genes: Detention, border controls and passports. PMID:29508942
Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching. PMID:29483921
Single and multiple phenotype QTL analyses of downy mildew resistance in interspecific grapevines. PMID:29417162
RNA-seq analysis reveals alternative splicing under salt stress in cotton, Gossypium davidsonii. PMID:29361913
The comparison of alternative splicing among the multiple tissues in cucumber. PMID:29301488
Comprehensive Workflow for the Genome-wide Identification and Expression Meta-analysis of the ATL E3 Ubiquitin Ligase Gene Family in Grapevine. PMID:29286420
Whole-genome sequencing and SNV genotyping of 'Nebbiolo' (Vitis vinifera L.) clones. PMID:29229917
RNA-seq-based genome annotation and identification of long-noncoding RNAs in the grapevine cultivar 'Riesling'. PMID:29197332
50/50 Expressional Odds of Retention Signifies the Distinction between Retained Introns and Constitutively Spliced Introns in Arabidopsis thaliana. PMID:29062321
A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3). PMID:28971018
Deciphering the Role of CBF/DREB Transcription Factors and Dehydrins in Maintaining the Quality of Table Grapes cv. Autumn Royal Treated with High CO2 Levels and Stored at 0°C. PMID:28970842
Global profiling of alternative splicing landscape responsive to drought, heat and their combination in wheat (Triticum aestivum L.). PMID:28834352
Identification and analysis of alternative splicing events in Phaseolus vulgaris and Glycine max. PMID:28830361
Comparative transcriptomics uncovers alternative splicing and molecular marker development in radish (Raphanus sativus L.). PMID:28673249
Statistical analysis of fractionation resistance by functional category and expression. PMID:28589858
Alternative splicing shapes transcriptome but not proteome diversity in Physcomitrella patens. PMID:28578384
Grapevine Subtilase Family: Update on New Sequences and Nomenclature Proposal. PMID:28533788
Constructing Integrated Networks for Identifying New Secondary Metabolic Pathway Regulators in Grapevine: Recent Applications and Future Opportunities. PMID:28446914
Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics. PMID:28368449
Alternative splicing affects the targeting sequence of peroxisome proteins in Arabidopsis. PMID:28352967
Splicing-related genes are alternatively spliced upon changes in ambient temperatures in plants. PMID:28257507
Response of Gene Expression and Alternative Splicing to Distinct Growth Environments in Tomato. PMID:28257093
SNP-Discovery by RAD-Sequencing in a Germplasm Collection of Wild and Cultivated Grapevines (V. vinifera L.). PMID:28125640
Transcriptional Characterization of a Widely-Used Grapevine Rootstock Genotype under Different Iron-Limited Conditions. PMID:28105035
Integrating Omics and Alternative Splicing Reveals Insights into Grape Response to High Temperature. PMID:28049741
Expression Profiles and DNA-Binding Affinity of Five ERF Genes in Bunches of Vitis vinifera cv. Cardinal Treated with High Levels of CO2 at Low Temperature. PMID:27965678
Revisiting Vitis vinifera Subtilase Gene Family: A Possible Role in Grapevine Resistance against Plasmopara viticola. PMID:27933087
Genome-wide characterisation and expression profile of the grapevine ATL ubiquitin ligase family reveal biotic and abiotic stress-responsive and development-related members. PMID:27910910
The Influence of Genotype and Environment on Small RNA Profiles in Grapevine Berry. PMID:27761135
Comparative RNA-Seq profiling of berry development between table grape 'Kyoho' and its early-ripening mutant 'Fengzao'. PMID:27729006
An NXF1 mRNA with a retained intron is expressed in hippocampal and neocortical neurons and is translated into a protein that functions as an Nxf1 cofactor. PMID:27708137
MYB107 and MYB9 Homologs Regulate Suberin Deposition in Angiosperms. PMID:27604696
Low Temperature and Short-Term High-CO2 Treatment in Postharvest Storage of Table Grapes at Two Maturity Stages: Effects on Transcriptome Profiling. PMID:27468290
The Interplay of Temperature and Genotype on Patterns of Alternative Splicing in Drosophila melanogaster. PMID:27440867
Long non-coding RNAs are major contributors to transcriptome changes in sunflower meiocytes with different recombination rates. PMID:27401977
Combined physiological, transcriptome, and cis-regulatory element analyses indicate that key aspects of ripening, metabolism, and transcriptional program in grapes (Vitis vinifera L.) are differentially modulated accordingly to fruit size. PMID:27245662
VESPUCCI: Exploring Patterns of Gene Expression in Grapevine. PMID:27242836
Identification of a Vitis vinifera endo-β-1,3-glucanase with antimicrobial activity against Plasmopara viticola. PMID:27216084
Genome-wide analysis of shoot growth-associated alternative splicing in moso bamboo. PMID:27170010
Expression of grapevine AINTEGUMENTA-like genes is associated with variation in ovary and berry size. PMID:26843119
Evolutionary Character of Alternative Splicing in Plants. PMID:26819552
Identification of alternative splicing events by RNA sequencing in early growth tomato fruits. PMID:26573826
Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars. PMID:26573226
Suppression of the D-class MADS-box AGL11 gene triggers seedlessness in fleshy fruits. PMID:26563346
Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops. PMID:26391769
Exploration of alternative splicing events in ten different grapevine cultivars. PMID:26380971
Changes in transcription of cytokinin metabolism and signalling genes in grape (Vitis vinifera L.) berries are associated with the ripening-related increase in isopentenyladenine. PMID:26377914
Identification of stable QTLs for vegetative and reproductive traits in the microvine (Vitis vinifera L.) using the 18 K Infinium chip. PMID:26283631
Heterozygous Mapping Strategy (HetMappS) for High Resolution Genotyping-By-Sequencing Markers: A Case Study in Grapevine. PMID:26244767
Insights into the nuclear export of murine leukemia virus intron-containing RNA. PMID:26158194
A comprehensive survey of the grapevine VQ gene family and its transcriptional correlation with WRKY proteins. PMID:26124765
Identification and functional characterization of grapevine transporters that mediate glucose-6-phosphate uptake into plastids. PMID:26007686
Multiomics in grape berry skin revealed specific induction of the stilbene synthetic pathway by ultraviolet-C irradiation. PMID:25761715
Post-transcriptional and post-translational regulations of drought and heat response in plants: a spider's web of mechanisms. PMID:25717333
Comparative genomics of grass EST libraries reveals previously uncharacterized splicing events in crop plants. PMID:25652661
Evolutionary conservation of a molecular machinery for export and expression of mRNAs with retained introns. PMID:25605961
Gene expression and fractionation resistance. PMID:25573431
Differential gene expression and alternative splicing between diploid and tetraploid watermelon. PMID:25520388
Plant Omics Data Center: an integrated web repository for interspecies gene expression networks with NLP-based curation. PMID:25505034
Insights into the evolution and diversification of the AT-hook Motif Nuclear Localized gene family in land plants. PMID:25311531
MicroRNAs as Mediators of the Ageing Process. PMID:25140888
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