GlycoProtDB
Names
More detailed information about this field from each metasource.
GlycoProtDB
metasource: Fairsharing.org
version: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
GPDB
metasource: Fairsharing.org
version: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Names
More detailed information about this field from each metasource.
GlycoProtDB
metasource: Fairsharing.orgversion: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
GPDB
metasource: Fairsharing.orgversion: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Names
More detailed information about this field from each metasource.
GlycoProtDB
metasource: Fairsharing.orgversion: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
GPDB
metasource: Fairsharing.orgversion: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
This source may no longer be available. No known URL could be resolved successfully.
GlycoProtDB is a glycoprotein database providing information of Asn (N)-glycosylated proteins and their glycosylated site(s), which were constructed by employing a bottom-up strategy using actual glycopeptide sequences identified by LC/MS-based glycoproteomic technologies. The database is searchable using gene ID, gene name, and its description (protein name) as query. Each data sheet of glycproteins is based on a single amino acid sequence in Wormpep database for C.elegans and NCBI Refseq database for mouse. The sheet presents actually detected N-glycosylation site(s) which are displayed each capturing methods of glycopeptide subset, e.g., lectins Concanavalin A, wheat germ agglutinin (WGA), or HILIC (hydrophilic interaction chromatography), as well as potential N-glycosylation sites (NX[STC], X≠P). Protein sequences, which have common glycopeptide sequence(s), are linked each other.
Description
More detailed information about this field from each metasource.
GlycoProtDB is a glycoprotein database providing information of Asn (N)-glycosylated proteins and their glycosylated site(s), which were constructed by employing a bottom-up strategy using actual glycopeptide sequences identified by LC/MS-based glycoproteomic technologies. The database is searchable using gene ID, gene name, and its description (protein name) as query. Each data sheet of glycproteins is based on a single amino acid sequence in Wormpep database for C.elegans and NCBI Refseq database for mouse. The sheet presents actually detected N-glycosylation site(s) which are displayed each capturing methods of glycopeptide subset, e.g., lectins Concanavalin A, wheat germ agglutinin (WGA), or HILIC (hydrophilic interaction chromatography), as well as potential N-glycosylation sites (NX[STC], X≠P). Protein sequences, which have common glycopeptide sequence(s), are linked each other.
metasource: Fairsharing.orgversion: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Webpage:
http://jcggdb.jp/rcmg/gpdb/Webpage
More detailed information about this field from each metasource.
http://jcggdb.jp/rcmg/gpdb/
metasource: Fairsharing.orgversion: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Large-scale identification of N-glycosylated proteins of mouse tissues and construction of a glycoprotein database, GlycoProtDB
PMID: 22823882
metasource: Fairsharing.org
version: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
Large-scale identification of N-glycosylated proteins of mouse tissues and construction of a glycoprotein database, GlycoProtDB
PMID: 22823882
metasource: Fairsharing.org
version: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
-
Large-scale identification of N-glycosylated proteins of mouse tissues and construction of a glycoprotein database, GlycoProtDB
PubMed citations: 23.
23 articles citing: Large-scale identification of N-glycosylated proteins of mouse tissues and construction of a glycoprotein database, GlycoProtDB
Functions of Glycosylation and Related Web Resources for Its Prediction. PMID:35696078
Glycoinformatics Tools for Comprehensive Characterization of Glycans Enzymatically Released from Proteins. PMID:34611862
Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics. PMID:32937895
Glycogene Expression Profiling of Hepatic Cells by RNA-Seq Analysis for Glyco-Biomarker Identification. PMID:32850363
Quantitative proteomics analysis reveals important roles of N-glycosylation on ER quality control system for development and pathogenesis in Magnaporthe oryzae. PMID:32092131
Reduced myocyte complex N-glycosylation causes dilated cardiomyopathy. PMID:30138037
An enrichment method based on synergistic and reversible covalent interactions for large-scale analysis of glycoproteins. PMID:29703890
Identification of Poly-N-Acetyllactosamine-Carrying Glycoproteins from HL-60 Human Promyelocytic Leukemia Cells Using a Site-Specific Glycome Analysis Method, Glyco-RIDGE. PMID:29675740
Adapting extracellular matrix proteomics for clinical studies on cardiac remodeling post-myocardial infarction. PMID:27651752
Sequence- and Structure-Based Analysis of Tissue-Specific Phosphorylation Sites. PMID:27332813
In-depth mapping of the mouse brain N-glycoproteome reveals widespread N-glycosylation of diverse brain proteins. PMID:27259237
Simultaneous Enrichment of Plasma Soluble and Extracellular Vesicular Glycoproteins Using Prolonged Ultracentrifugation-Electrostatic Repulsion-hydrophilic Interaction Chromatography (PUC-ERLIC) Approach. PMID:25862729
Targeted methods for quantitative analysis of protein glycosylation. PMID:25522218
Using a new Lrig1 reporter mouse to assess differences between two Lrig1 antibodies in the intestine. PMID:25460603
Expediting topology data gathering for the TOPDB database. PMID:25392424
GlycoRDF: an ontology to standardize glycomics data in RDF. PMID:25388145
Differential analysis of N-glycoproteome between hepatocellular carcinoma and normal human liver tissues by combination of multiple protease digestion and solid phase based labeling. PMID:25097464
RNAi screening of human glycogene orthologs in the nematode Caenorhabditis elegans and the construction of the C. elegans glycogene database. PMID:25091817
Cardiac extracellular proteome profiling and membrane topology analysis using glycoproteomics. PMID:24920555
Intracellular lectins are involved in quality control of glycoproteins. PMID:24522156
Introducing glycomics data into the Semantic Web. PMID:24280648
Glycoprotein disease markers and single protein-omics. PMID:23399550
Using databases and web resources for glycomics research. PMID:23325765
Tags:
Tags
More detailed information about this field from each metasource.
chromatography
metasource: Fairsharing.org
version: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
mass spectrometry spectra
metasource: Fairsharing.org
version: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Tags
More detailed information about this field from each metasource.
chromatography
metasource: Fairsharing.orgversion: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
mass spectrometry spectra
metasource: Fairsharing.orgversion: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: GPDB; GlycoProtDB; DOI: https://doi.org/10.25504/FAIRsharing.bc23s; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
chromatography mass spectrometry spectra protein
Need help integrating and/or managing biomedical data?