Golm Metabolome Database

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Golm Metabolome Database

metasource: Fairsharing.org
version: FAIRsharing.org: GMD; Golm Metabolome Database; DOI: https://doi.org/10.25504/FAIRsharing.jykmkw; Last edited: Jan. 24, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: re3data.org
version: re3data.org: Golm Metabolome Database; editing status 2022-03-18; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MC9K last accessed: 2022-11-04

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GMD

metasource: Fairsharing.org
version: FAIRsharing.org: GMD; Golm Metabolome Database; DOI: https://doi.org/10.25504/FAIRsharing.jykmkw; Last edited: Jan. 24, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: re3data.org
version: re3data.org: Golm Metabolome Database; editing status 2022-03-18; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MC9K last accessed: 2022-11-04

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Golm Metabolome Database (GMD)

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:36.566394

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gmd

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:36.566394

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Other names: GMD, Golm Metabolome Database (GMD), gmd

The Golm Metabolome Database (GMD) provides gas chromatography (GC) mass spectrometry (MS) reference spectra, reference metabolite profiles and tools for one of the most widespread routine technologies applied to the large scale screening and discovery of novel metabolic biomarkers.

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Publications

More detailed information about this field from each metasource. ×

Decision tree supported substructure prediction of metabolites from GC-MS profiles
PMID: 20526350

metasource: Fairsharing.org
version: FAIRsharing.org: GMD; Golm Metabolome Database; DOI: https://doi.org/10.25504/FAIRsharing.jykmkw; Last edited: Jan. 24, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

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http://dx.doi.org/10.1007/4735_2007_0229

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:36.566394

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• Decision tree supported substructure prediction of metabolites from GC-MS profiles PubMed citations: 112.

  112 articles citing: Decision tree supported substructure prediction of metabolites from GC-MS profiles

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  Metabolomic and proteomic profiling in bipolar disorder patients revealed potential molecular signatures related to hemostasis. PMID:35922643

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  The Differential Metabolic Response of Oral Squamous Cell Carcinoma Cells and Normal Oral Epithelial Cells to Cisplatin Exposure. PMID:35629893

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  Wheat and Barley Grass Juice Addition to a Plant-Based Feed Improved Growth and Flesh Quality of Common Carp (Cyprinus carpio). PMID:35454292

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  A Comparative Analysis of Metabolic Profiles of Embryonic Skeletal Muscle from Lantang and Landrace Pigs. PMID:35203128

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  Herbivore-induced plant volatiles, not natural enemies, mediate a positive indirect interaction between insect herbivores. PMID:35001172

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  A framework for automated structure elucidation from routine NMR spectra. PMID:34976353

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  Chemical Compounds, Antitumor and Antimicrobial Activities of Dry Ethanol Extracts from Koelreuteria paniculata Laxm. PMID:34961185

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  Effects of Arbuscular Mycorrhiza on Primary Metabolites in Phloem Exudates of Plantago major and Poa annua and on a Generalist Aphid. PMID:34884890

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  High-resolution association mapping with libraries of immortalized lines from ancestral landraces. PMID:34668978

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  Genotype- and tissue-specific metabolic networks and hub genes involved in water-induced distinct sweet cherry fruit cracking phenotypes. PMID:34667535

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  Automated fragment formula annotation for electron ionisation, high resolution mass spectrometry: application to atmospheric measurements of halocarbons. PMID:34607604

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  Ion Homeostasis and Metabolome Analysis of Arabidopsis 14-3-3 Quadruple Mutants to Salt Stress. PMID:34589094

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  Metabolic Profiling and Metabolite Correlation Network Analysis Reveal That Fusarium solani Induces Differential Metabolic Responses in Lotus japonicus and Lotus tenuis against Severe Phosphate Starvation. PMID:34575803

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  An Integrated Analysis of Intracellular Metabolites and Virulence Gene Expression during Biofilm Development of a Clinical Isolate of Candida tropicalis on Distinct Surfaces. PMID:34445744

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  Characterization of the Heat-Stable Proteome during Seed Germination in Arabidopsis with Special Focus on LEA Proteins. PMID:34360938

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  Metabolomics-Guided Elucidation of Plant Abiotic Stress Responses in the 4IR Era: An Overview. PMID:34357339

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  Exploring functionality of the reverse β-oxidation pathway in Corynebacterium glutamicum for production of adipic acid. PMID:34348702

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  A common F-box gene regulates the leucine homeostasis of Medicago truncatula and Arabidopsis thaliana. PMID:33973099

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  A GC-MS/Single-Cell Method to Evaluate Membrane Transporter Substrate Specificity and Signaling. PMID:33928121

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  iTRAQ-based proteome profiling revealed the role of Phytochrome A in regulating primary metabolism in tomato seedling. PMID:33824368

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  Metabolomics of Photosynthetically Active Tissues in White Grapes: Effects of Light Microclimate and Stress Mitigation Strategies. PMID:33808188

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  GC-MS-Based Metabolomics Study of Single- and Dual-Species Biofilms of Candida albicans and Klebsiella pneumoniae. PMID:33800643

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  Impact of the Peptide WMR-K on Dual-Species Biofilm Candida albicans/Klebsiella pneumoniae and on the Untargeted Metabolomic Profile. PMID:33669279

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  Metabolomics study reveals the potential evidence of metabolic reprogramming towards the Warburg effect in precancerous lesions. PMID:33532002

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  Metabolic Signatures of the Exposome-Quantifying the Impact of Exposure to Environmental Chemicals on Human Health. PMID:33182712

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  Novel insights into the calcium action in cherry fruit development revealed by high-throughput mapping. PMID:32909183

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  Decoding altitude-activated regulatory mechanisms occurring during apple peel ripening. PMID:32821403

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  Rapid and comprehensive evaluation of microalgal fatty acids via untargeted gas chromatography and time-of-flight mass spectrometry. PMID:32624990

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  Season Affects Yield and Metabolic Profiles of Rice (Oryza sativa) under High Night Temperature Stress in the Field. PMID:32366031

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  Sweet cherry fruit cracking: follow-up testing methods and cultivar-metabolic screening. PMID:32308729

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  Systems-Based Approaches to Unravel Networks and Individual Elements Involved in Apple Superficial Scald. PMID:32117359

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  Identification of metabolites from tandem mass spectra with a machine learning approach utilizing structural features. PMID:31605112

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  Leaf metabolic signatures induced by real and simulated herbivory in black mustard (Brassica nigra). PMID:31563978

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  Climate and development modulate the metabolome and antioxidative system of date palm leaves. PMID:31375818

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  Impact of CO2/HCO3 - Availability on Anaplerotic Flux in Pyruvate Dehydrogenase Complex-Deficient Corynebacterium glutamicum Strains. PMID:31358612

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  Discovery of food identity markers by metabolomics and machine learning technology. PMID:31273246

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  Review of recent developments in GC-MS approaches to metabolomics-based research. PMID:30830421

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  Oviposition by Spodoptera exigua on Solanum dulcamara Alters the Plant's Response to Herbivory and Impairs Larval Performance. PMID:30545097

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  The Synechocystis sp. PCC 6803 Genome Encodes Up to Four 2-Phosphoglycolate Phosphatases. PMID:30542360

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  Light-Dependent Changes in the Spatial Localization of Metabolites in Solenostemon scutellarioides (Coleus Henna) Visualized by Matrix-Free Atmospheric Pressure Electrospray Laser Desorption Ionization Mass Spectrometry Imaging. PMID:30283472

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  Recent advances and prospects of computational methods for metabolite identification: a review with emphasis on machine learning approaches. PMID:30099485

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  SIMPLE: Sparse Interaction Model over Peaks of moLEcules for fast, interpretable metabolite identification from tandem mass spectra. PMID:29950009

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  COI1-dependent jasmonate signalling affects growth, metabolite production and cell wall protein composition in arabidopsis. PMID:29924303

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  The Effect of Single and Multiple SERAT Mutants on Serine and Sulfur Metabolism. PMID:29892307

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  Cardiovascular Metabolomics. PMID:29700070

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  Talarodiolide, a New 12-Membered Macrodiolide, and GC/MS Investigation of Culture Filtrate and Mycelial Extracts of Talaromyces pinophilus. PMID:29671776

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  Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. PMID:29382692

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  Primed primary metabolism in systemic leaves: a functional systems analysis. PMID:29317679

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  Effects of intraspecific and intra-individual differences in plant quality on preference and performance of monophagous aphid species. PMID:29143149

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  Rapid in situ 13C tracing of sucrose utilization in Arabidopsis sink and source leaves. PMID:29075313

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  Exploring priming responses involved in peach fruit acclimation to cold stress. PMID:28900303

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  Post-mortem molecular profiling of three psychiatric disorders. PMID:28754123

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  Detecting early signs of heat and drought stress in Phoenix dactylifera (date palm). PMID:28570677

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  Effects of Arbuscular Mycorrhiza on Plant Chemistry and the Development and Behavior of a Generalist Herbivore. PMID:27787678

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  Central Metabolic Responses to Ozone and Herbivory Affect Photosynthesis and Stomatal Closure. PMID:27758847

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  Multivariate data validation for investigating primary HCMV infection in pregnancy. PMID:27656676

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  Predictors and patterns of problematic Internet game use using a decision tree model. PMID:27499227

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  Low vapour pressure deficit affects nitrogen nutrition and foliar metabolites in silver birch. PMID:27259554

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  Artificially decreased vapour pressure deficit in field conditions modifies foliar metabolite profiles in birch and aspen. PMID:27255929

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  Nontargeted evaluation of the fate of steroids during wastewater treatment by comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry. PMID:27206750

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  Global Metabolic Profiling of Arabidopsis Polyamine Oxidase 4 (AtPAO4) Loss-of-Function Mutants Exhibiting Delayed Dark-Induced Senescence. PMID:26925084

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  Isotopic Ratio Outlier Analysis of the S. cerevisiae Metabolome Using Accurate Mass Gas Chromatography/Time-of-Flight Mass Spectrometry: A New Method for Discovery. PMID:26820234

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  COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access. PMID:26491418

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  Symbiosis dependent accumulation of primary metabolites in arbuscule-containing cells. PMID:26424710

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  Integrated Analysis of Engineered Carbon Limitation in a Quadruple CO2/HCO3- Uptake Mutant of Synechocystis sp. PCC 6803. PMID:26373660

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  PhenoMeter: A Metabolome Database Search Tool Using Statistical Similarity Matching of Metabolic Phenotypes for High-Confidence Detection of Functional Links. PMID:26284240

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  Whole-cell response to nitrogen deprivation in the diatom Phaeodactylum tricornutum. PMID:26163699

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  Cytoskeletal Components Define Protein Location to Membrane Microdomains. PMID:26091700

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  Computational Ranking of Yerba Mate Small Molecules Based on Their Predicted Contribution to Antibacterial Activity against Methicillin-Resistant Staphylococcus aureus. PMID:25955847

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  Dissection of jasmonate functions in tomato stamen development by transcriptome and metabolome analyses. PMID:25895675

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  Open-access metabolomics databases for natural product research: present capabilities and future potential. PMID:25789275

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  Profiling of spatial metabolite distributions in wheat leaves under normal and nitrate limiting conditions. PMID:25680480

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  Transcriptome and metabolome reprogramming in Vitis vinifera cv. Trincadeira berries upon infection with Botrytis cinerea. PMID:25675955

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  Next-generation technologies for multiomics approaches including interactome sequencing. PMID:25649523

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  Integrated Transcriptomic and Metabolomic Characterization of the Low-Carbon Response Using an ndhR Mutant of Synechocystis sp. PCC 6803. PMID:25630438

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  Metabolite changes in conifer buds and needles during forced bud break in Norway spruce (Picea abies) and European silver fir (Abies alba). PMID:25566281

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  Systems-wide analysis of acclimation responses to long-term heat stress and recovery in the photosynthetic model organism Chlamydomonas reinhardtii. PMID:25415976

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  Metabolomic profiling of the purple sulfur bacterium Allochromatium vinosum during growth on different reduced sulfur compounds and malate. PMID:25374486

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  Novel strategy for non-targeted isotope-assisted metabolomics by means of metabolic turnover and multivariate analysis. PMID:25257997

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  Development of a GC/Quadrupole-Orbitrap mass spectrometer, part II: new approaches for discovery metabolomics. PMID:25166283

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  Development and in silico evaluation of large-scale metabolite identification methods using functional group detection for metabolomics. PMID:25120557

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  Recent applications of metabolomics toward cyanobacteria. PMID:24957891

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  Effects of Inorganic Carbon Limitation on the Metabolome of the Synechocystis sp. PCC 6803 Mutant Defective in glnB Encoding the Central Regulator PII of Cyanobacterial C/N Acclimation. PMID:24957024

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  Rationales and approaches for studying metabolism in eukaryotic microalgae. PMID:24957022

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  Rewiring Host Lipid Metabolism by Large Viruses Determines the Fate of Emiliania huxleyi, a Bloom-Forming Alga in the Ocean. PMID:24920329

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  In high-light-acclimated coffee plants the metabolic machinery is adjusted to avoid oxidative stress rather than to benefit from extra light enhancement in photosynthetic yield. PMID:24733284

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  Genomics and bioinformatics resources for translational science in Rosaceae. PMID:24634697

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  Plant-mediated interactions between shoot-feeding aphids and root-feeding nematodes depend on nitrate fertilization. PMID:23836091

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  Identification of drought tolerance markers in a diverse population of rice cultivars by expression and metabolite profiling. PMID:23717458

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  Comprehensive dissection of spatiotemporal metabolic shifts in primary, secondary, and lipid metabolism during developmental senescence in Arabidopsis. PMID:23696093

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  Dissecting rice polyamine metabolism under controlled long-term drought stress. PMID:23577102

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  Recent progress in the development of metabolome databases for plant systems biology. PMID:23577015

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  Search for transcriptional and metabolic markers of grape pre-ripening and ripening and insights into specific aroma development in three Portuguese cultivars. PMID:23565246

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  Computational mass spectrometry for small molecules. PMID:23453222

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  Autoinducers act as biological timers in Vibrio harveyi. PMID:23110227

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  Crosstalk between above- and belowground herbivores is mediated by minute metabolic responses of the host Arabidopsis thaliana. PMID:23045608

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  Dehydrin, alcohol dehydrogenase, and central metabolite levels are associated with cold tolerance in diploid strawberry (Fragaria spp.). PMID:23014928

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  Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum. PMID:22713133

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  Ultra performance liquid chromatography and high resolution mass spectrometry for the analysis of plant lipids. PMID:22629264

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  MetaMapp: mapping and visualizing metabolomic data by integrating information from biochemical pathways and chemical and mass spectral similarity. PMID:22591066

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  Metabolomics of human breast cancer: new approaches for tumor typing and biomarker discovery. PMID:22546809

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  Bioinformatics Tools for Mass Spectroscopy-Based Metabolomic Data Processing and Analysis. PMID:22438836

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  A distinct metabolic signature predicts development of fasting plasma glucose. PMID:22300499

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  Functional associations between the metabolome and manganese tolerance in Vigna unguiculata. PMID:21934118

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  Recommendations for reporting metabolite data. PMID:21771932

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  Extending biochemical databases by metabolomic surveys. PMID:21566124

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  Unpredictability of metabolism--the key role of metabolomics science in combination with next-generation genome sequencing. PMID:21556754

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  Advances in structure elucidation of small molecules using mass spectrometry. PMID:21289855

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  Modulation of the major paths of carbon in photorespiratory mutants of synechocystis. PMID:21283704

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  Metabolic and transcriptomic phenotyping of inorganic carbon acclimation in the Cyanobacterium Synechococcus elongatus PCC 7942. PMID:21282404

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  Overexpression of sinapine esterase BnSCE3 in oilseed rape seeds triggers global changes in seed metabolism. PMID:21248075

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  Mass spectrometry-based metabolomics, analysis of metabolite-protein interactions, and imaging. PMID:20701590
• http://dx.doi.org/10.1007/4735_2007_0229

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More detailed information about this field from each metasource. ×

gas chromatography

metasource: Fairsharing.org
version: FAIRsharing.org: GMD; Golm Metabolome Database; DOI: https://doi.org/10.25504/FAIRsharing.jykmkw; Last edited: Jan. 24, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

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mass spectrometry assay

metasource: Fairsharing.org
version: FAIRsharing.org: GMD; Golm Metabolome Database; DOI: https://doi.org/10.25504/FAIRsharing.jykmkw; Last edited: Jan. 24, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

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mass spectrometry spectra

metasource: Fairsharing.org
version: FAIRsharing.org: GMD; Golm Metabolome Database; DOI: https://doi.org/10.25504/FAIRsharing.jykmkw; Last edited: Jan. 24, 2020, 12:07 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

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biology

metasource: re3data.org
version: re3data.org: Golm Metabolome Database; editing status 2022-03-18; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MC9K last accessed: 2022-11-04

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chemical structure

metasource: re3data.org
version: re3data.org: Golm Metabolome Database; editing status 2022-03-18; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MC9K last accessed: 2022-11-04

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chromatography

metasource: re3data.org
version: re3data.org: Golm Metabolome Database; editing status 2022-03-18; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MC9K last accessed: 2022-11-04

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decision trees

metasource: re3data.org
version: re3data.org: Golm Metabolome Database; editing status 2022-03-18; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MC9K last accessed: 2022-11-04

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enzymatic activity

metasource: re3data.org
version: re3data.org: Golm Metabolome Database; editing status 2022-03-18; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MC9K last accessed: 2022-11-04

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genomics

metasource: re3data.org
version: re3data.org: Golm Metabolome Database; editing status 2022-03-18; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MC9K last accessed: 2022-11-04

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intermediate product

metasource: re3data.org
version: re3data.org: Golm Metabolome Database; editing status 2022-03-18; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MC9K last accessed: 2022-11-04

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mass spectrometry

metasource: re3data.org
version: re3data.org: Golm Metabolome Database; editing status 2022-03-18; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MC9K last accessed: 2022-11-04

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metabolic

metasource: re3data.org
version: re3data.org: Golm Metabolome Database; editing status 2022-03-18; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MC9K last accessed: 2022-11-04

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organic compounds

metasource: re3data.org
version: re3data.org: Golm Metabolome Database; editing status 2022-03-18; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MC9K last accessed: 2022-11-04

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query spectrum

metasource: re3data.org
version: re3data.org: Golm Metabolome Database; editing status 2022-03-18; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3MC9K last accessed: 2022-11-04

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cheminformatics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:36.566394

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data management

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:36.566394

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gas chromatography mass spectrometry assay mass spectrometry spectra chemical structure chromatography decision trees enzymatic activity genomics intermediate product mass spectrometry metabolic organic compounds query spectrum cheminformatics data management