GenomeHubs

Simple containerised setup of a custom Ensembl database and web server for any species. Forked from molluscdb/molluscdb-plugin. Example configurations to set up custom Ensembl sites using GenomeHubs. GenomeHubs example configuration and demo script. Generic Ensembl plugin for genomehubs sites. GenomeHubs is designed to make it easy to set up and host a core set of bioinformatics tools to help research communities share and access genomic datasets for non-model organisms. Sets up a GenomeHubs site hosting a mirror of the core database for the Glanville fritillary, Melitaea cinxia and imports the genome of the winter moth, Operophtera brumata, into a GenomeHubs site from FASTA and GFF.

Webpage:
http://GenomeHubs.org

Licence:
Name: MIT

Publications:

Tags:

data management workflows sequence assembly plant biology model organisms

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