Gene Wiki
The goal of the Gene Wiki is to apply community intelligence to the annotation of gene and protein function. The Gene Wiki is an informal collection of pages on human genes and proteins, and this effort to develop these pages is tightly coordinated with the Molecular and Cellular Biology Wikiproject. Our specific aims are summarized as follows: To provide a well written and informative Wikipedia article for every notable human gene; To invite participation by interested lay editors, students, professionals, and academics from around the world; To integrate Gene Wiki articles with existing Wikipedia content through the use of internal wiki links increasing the value of both.
Description
More detailed information about this field from each metasource.
The goal of the Gene Wiki is to apply community intelligence to the annotation of gene and protein function. The Gene Wiki is an informal collection of pages on human genes and proteins, and this effort to develop these pages is tightly coordinated with the Molecular and Cellular Biology Wikiproject. Our specific aims are summarized as follows: To provide a well written and informative Wikipedia article for every notable human gene; To invite participation by interested lay editors, students, professionals, and academics from around the world; To integrate Gene Wiki articles with existing Wikipedia content through the use of internal wiki links increasing the value of both.
metasource: Fairsharing.orgversion: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
An informal collection of pages on human genes
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://en.wikipedia.org/wiki/Portal:Gene_WikiWebpage
More detailed information about this field from each metasource.
http://en.wikipedia.org/wiki/Portal:Gene_Wiki
metasource: Fairsharing.orgversion: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
The Gene Wiki: community intelligence applied to human gene annotation
PMID: 19755503
metasource: Fairsharing.org
version: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
The Gene Wiki in 2011: community intelligence applied to human gene annotation
PMID: 22075991
metasource: Fairsharing.org
version: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Wikidata as a semantic framework for the Gene Wiki initiative
PMID: 26989148
metasource: Fairsharing.org
version: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/nar/GKR925
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
The Gene Wiki: community intelligence applied to human gene annotation
PMID: 19755503
metasource: Fairsharing.org
version: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
The Gene Wiki in 2011: community intelligence applied to human gene annotation
PMID: 22075991
metasource: Fairsharing.org
version: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Wikidata as a semantic framework for the Gene Wiki initiative
PMID: 26989148
metasource: Fairsharing.org
version: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/nar/GKR925
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
-
The Gene Wiki: community intelligence applied to human gene annotation
PubMed citations: 41.
41 articles citing: The Gene Wiki: community intelligence applied to human gene annotation
Situating Wikipedia as a health information resource in various contexts: A scoping review. PMID:32069322
Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network. PMID:32069277
Biomedical Informatics on the Cloud: A Treasure Hunt for Advancing Cardiovascular Medicine. PMID:29700073
LiverWiki: a wiki-based database for human liver. PMID:29029599
Wikidata as a semantic framework for the Gene Wiki initiative. PMID:26989148
PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols. PMID:26587054
Utilizing the Wikidata system to improve the quality of medical content in Wikipedia in diverse languages: a pilot study. PMID:25944105
Organizing knowledge to enable personalization of medicine in cancer. PMID:25222080
Low budget analysis of Direct-To-Consumer genomic testing familial data. PMID:24627758
Mining Genotype-Phenotype Associations from Public Knowledge Sources via Semantic Web Querying. PMID:24303249
Activities at the Universal Protein Resource (UniProt). PMID:24253303
The ontology of craniofacial development and malformation for translational craniofacial research. PMID:24124010
Dizeez: an online game for human gene-disease annotation. PMID:23951102
Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data. PMID:23734622
NF-κB-dependent role for cold-inducible RNA binding protein in regulating interleukin 1β. PMID:23437386
CircaDB: a database of mammalian circadian gene expression profiles. PMID:23180795
BioGPS and MyGene.info: organizing online, gene-centric information. PMID:23175613
PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants. PMID:23161682
TP Atlas: integration and dissemination of advances in Targeted Proteins Research Program (TPRP)-structural biology project phase II in Japan. PMID:22644393
Translational web robots for pathogen genome analysis. PMID:22587672
Linking genes to diseases with a SNPedia-Gene Wiki mashup. PMID:22541597
The transcription factor encyclopedia. PMID:22458515
How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience. PMID:22438567
Building a biomedical semantic network in Wikipedia with Semantic Wiki Links. PMID:22434829
Bioinformatics for personal genome interpretation. PMID:22247263
New methods for finding common insertion sites and co-occurring common insertion sites in transposon- and virus-based genetic screens. PMID:22241771
Mining the Gene Wiki for functional genomic knowledge. PMID:22165947
Making your database available through Wikipedia: the pros and cons. PMID:22144683
GONUTS: the Gene Ontology Normal Usage Tracking System. PMID:22110029
Aging-kb: a knowledge base for the study of the aging process. PMID:22100666
WikiPathways: building research communities on biological pathways. PMID:22096230
Disease Ontology: a backbone for disease semantic integration. PMID:22080554
The Gene Wiki in 2011: community intelligence applied to human gene annotation. PMID:22075991
EcoliWiki: a wiki-based community resource for Escherichia coli. PMID:22064863
Software for systems biology: from tools to integrated platforms. PMID:22048662
Tools and collaborative environments for bioinformatics research. PMID:21984743
Knowledge sharing and collaboration in translational research, and the DC-THERA Directory. PMID:21969471
The FaceBase Consortium: a comprehensive program to facilitate craniofacial research. PMID:21458441
Rfam: Wikipedia, clans and the "decimal" release. PMID:21062808
Sustainable digital infrastructure. Although databases and other online resources have become a central tool for biological research, their long-term support and maintenance is far from secure. PMID:20847740
Methodology for the development of a taxonomy and toolkit to evaluate health-related habits and lifestyle (eVITAL). PMID:20334642 -
The Gene Wiki in 2011: community intelligence applied to human gene annotation
PubMed citations: 29.
29 articles citing: The Gene Wiki in 2011: community intelligence applied to human gene annotation
Wikidata and the bibliography of life. PMID:35821898
Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO). PMID:34710081
Scientific Discovery Games for Biomedical Research. PMID:34308269
The Human Salivary Proteome Wiki: A Community-Driven Research Platform. PMID:34032471
Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network. PMID:32069277
LiverWiki: a wiki-based database for human liver. PMID:29029599
NoGOA: predicting noisy GO annotations using evidences and sparse representation. PMID:28732468
WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. PMID:28365742
Interspecies gene function prediction using semantic similarity. PMID:28155711
Protein Bioinformatics Databases and Resources. PMID:28150231
Crowd-sourcing and author submission as alternatives to professional curation. PMID:28025340
SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care. PMID:27018265
Wikidata as a semantic framework for the Gene Wiki initiative. PMID:26989148
Aging Chart: a community resource for rapid exploratory pathway analysis of age-related processes. PMID:26602690
Harnessing the heart of big data. PMID:25814682
Biological databases for human research. PMID:25712261
LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. PMID:25399417
Organizing knowledge to enable personalization of medicine in cancer. PMID:25222080
Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information. PMID:24564249
miRBase: annotating high confidence microRNAs using deep sequencing data. PMID:24275495
RiceWiki: a wiki-based database for community curation of rice genes. PMID:24136999
Ten simple rules for cultivating open science and collaborative R&D. PMID:24086123
NeuroLex.org: an online framework for neuroscience knowledge. PMID:24009581
Community intelligence in knowledge curation: an application to managing scientific nomenclature. PMID:23451119
BioGPS and MyGene.info: organizing online, gene-centric information. PMID:23175613
PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants. PMID:23161682
Rfam 11.0: 10 years of RNA families. PMID:23125362
Linking genes to diseases with a SNPedia-Gene Wiki mashup. PMID:22541597
Making your database available through Wikipedia: the pros and cons. PMID:22144683 -
Wikidata as a semantic framework for the Gene Wiki initiative
PubMed citations: 19.
19 articles citing: Wikidata as a semantic framework for the Gene Wiki initiative
A resource to explore the discovery of rare diseases and their causative genes. PMID:33947870
Intestinal microbiota alterations by dietary exposure to chemicals from food cooking and processing. Application of data science for risk prediction. PMID:33680352
A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses. PMID:33482803
Structured reviews for data and knowledge-driven research. PMID:32283553
Wikidata as a knowledge graph for the life sciences. PMID:32180547
Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network. PMID:32069277
Semalytics: a semantic analytics platform for the exploration of distributed and heterogeneous cancer data in translational research. PMID:31287543
ChlamBase: a curated model organism database for the Chlamydia research community. PMID:30985891
ECO, the Evidence & Conclusion Ontology: community standard for evidence information. PMID:30407590
Human Disease Ontology 2018 update: classification, content and workflow expansion. PMID:30407550
The Immune Epitope Database (IEDB): 2018 update. PMID:30357391
The ReFRAME library as a comprehensive drug repurposing library and its application to the treatment of cryptosporidiosis. PMID:30282735
Liberating links between datasets using lightweight data publishing: an example using plant names and the taxonomic literature. PMID:30065607
The Cellosaurus, a Cell-Line Knowledge Resource. PMID:29805321
FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. PMID:29688354
Supporting shared hypothesis testing in the biomedical domain. PMID:29422110
RDFIO: extending Semantic MediaWiki for interoperable biomedical data management. PMID:28870259
Evolution of Wikipedia's medical content: past, present and future. PMID:28847845
WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. PMID:28365742 - http://dx.doi.org/10.1093/nar/GKR925
Tags:
Tags
More detailed information about this field from each metasource.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome annotation
metasource: Fairsharing.org
version: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
sequence annotation
metasource: Fairsharing.org
version: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
human genes and diseases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
general human genetics databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
sequence annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: Gene Wiki; Gene Wiki; DOI: https://doi.org/10.25504/FAIRsharing.t3snf; Last edited: Jan. 8, 2019, 1:15 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
human genes and diseases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
general human genetics databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
gene genome annotation protein sequence annotation human genes and diseases general human genetics
Need help integrating and/or managing biomedical data?