GWIPS-viz
Names
More detailed information about this field from each metasource.
GWIPS-viz
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:29.885885
gwips-viz
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:29.885885
Names
More detailed information about this field from each metasource.
GWIPS-viz
metasource: Fairsharing.orgversion: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:29.885885
gwips-viz
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:29.885885
Names
More detailed information about this field from each metasource.
GWIPS-viz
metasource: Fairsharing.orgversion: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:29.885885
gwips-viz
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:29.885885
GWIPS-viz is a freely available on-line genome browser which provides pre-populated ribosome profiling (Ribo-seq) and mRNA-seq tracks from published studies.
Description
More detailed information about this field from each metasource.
GWIPS-viz is a freely available on-line genome browser which provides pre-populated ribosome profiling (Ribo-seq) and mRNA-seq tracks from published studies.
metasource: Fairsharing.orgversion: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Genome-Wide Information on Protein Synthesis in vivo using ribosome profiling
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Specialized ribosome profiling (ribo-seq) browser providing free access to the genomic alignments of ribo-seq reads in conjunction with mRNA-seq controls along with relevant annotation tracks. Based on the UCSC Genome Browser, the tool’s ribo-seq tracks for various organisms allows for cross-species comparison of orthologous genes while the separate tracks for each ribo-seq study enables cross-study comparisons.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:29.885885
Webpage:
http://gwips.ucc.ie/Webpage
More detailed information about this field from each metasource.
http://gwips.ucc.ie/
metasource: Fairsharing.orgversion: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://gwips.ucc.ie
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:29.885885
Licence:
Name: GWIPS-viz Conditions of UseLicence name
More detailed information about this field from each metasource.
GWIPS-viz Conditions of Use
metasource: Fairsharing.orgversion: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Licence URL
More detailed information about this field from each metasource.
https://gwips.ucc.ie/index.html
metasource: Fairsharing.orgversion: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
GWIPS-viz: development of a ribo-seq genome browser
PMID: 24185699
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:29.885885
GWIPS-viz: 2018 update
PMID: 28977460
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
GWIPS-viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms
PMID: 25736862
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:29.885885
The GWIPS-viz Browser
PMID: 29927076
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/nar/gkt1035
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
GWIPS-viz: development of a ribo-seq genome browser
PMID: 24185699
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:29.885885
GWIPS-viz: 2018 update
PMID: 28977460
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
GWIPS-viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms
PMID: 25736862
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:29.885885
The GWIPS-viz Browser
PMID: 29927076
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://dx.doi.org/10.1093/nar/gkt1035
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
-
GWIPS-viz: development of a ribo-seq genome browser
PubMed citations: 110.
110 articles citing: GWIPS-viz: development of a ribo-seq genome browser
Small ORFs as New Regulators of Pri-miRNAs and miRNAs Expression in Human and Drosophila. PMID:35628573
Development of a ribosome profiling protocol to study translation in Kluyveromyces marxianus. PMID:35521744
A reciprocal feedback between N6-methyladenosine reader YTHDF3 and lncRNA DICER1-AS1 promotes glycolysis of pancreatic cancer through inhibiting maturation of miR-5586-5p. PMID:35183226
Long Non-Coding RNAs Associated with Ribosomes in Human Adipose-Derived Stem Cells: From RNAs to Microproteins. PMID:34827671
G-quadruplex RNA motifs influence gene expression in the malaria parasite Plasmodium falciparum. PMID:34792144
Upstream open reading frame with NOTCH2NLC GGC expansion generates polyglycine aggregates and disrupts nucleocytoplasmic transport: implications for polyglycine diseases. PMID:34694469
Assessment of Sacsin Turnover in Patients With ARSACS: Implications for Molecular Diagnosis and Pathogenesis. PMID:34649874
Upstream Open Reading Frame Mediated Translation of WNK8 Is Required for ABA Response in Arabidopsis. PMID:34639024
Exon and intron sharing in opposite direction-an undocumented phenomenon in human genome-between Pou5f1 and Tcf19 genes. PMID:34610795
Unraveling the hidden role of a uORF-encoded peptide as a kinase inhibitor of PKCs. PMID:34593629
Exploring Evidence of Non-coding RNA Translation With Trips-Viz and GWIPS-Viz Browsers. PMID:34490252
Proteogenomic Analysis Unveils the HLA Class I-Presented Immunopeptidome in Melanoma and EGFR-Mutant Lung Adenocarcinoma. PMID:34391887
A fluorescence-based genetic screen reveals diverse mechanisms silencing small RNA signaling in E. coli. PMID:34210798
Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data. PMID:33950201
Drosophila primary microRNA-8 encodes a microRNA-encoded peptide acting in parallel of miR-8. PMID:33892772
An extended catalogue of tandem alternative splice sites in human tissue transcriptomes. PMID:33826604
Evidence That Regulation of Pri-miRNA/miRNA Expression Is Not a General Rule of miPEPs Function in Humans. PMID:33810468
Full-length ribosome density prediction by a multi-input and multi-output model. PMID:33770074
Uncovering deeply conserved motif combinations in rapidly evolving noncoding sequences. PMID:33430943
The translation attenuating arginine-rich sequence in the extended signal peptide of the protein-tyrosine phosphatase PTPRJ/DEP1 is conserved in mammals. PMID:33296397
Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV). PMID:33239395
Alternative Splicing of Opioid Receptor Genes Shows a Conserved Pattern for 6TM Receptor Variants. PMID:33010019
Regulation of neuronal commitment in mouse embryonic stem cells by the Reno1/Bahcc1 locus. PMID:32969152
Unusually efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF. PMID:32958672
ZMAT2 in Humans and Other Primates: A Highly Conserved and Understudied Gene. PMID:32952394
The Tug1 lncRNA locus is essential for male fertility. PMID:32894169
Translation initiation downstream from annotated start codons in human mRNAs coevolves with the Kozak context. PMID:32669370
CARMAL Is a Long Non-coding RNA Locus That Regulates MFGE8 Expression. PMID:32625236
Plasmodium falciparum translational machinery condones polyadenosine repeats. PMID:32469313
RiboToolkit: an integrated platform for analysis and annotation of ribosome profiling data to decode mRNA translation at codon resolution. PMID:32427338
Analysis of computational codon usage models and their association with translationally slow codons. PMID:32352987
A Continuum of Evolving De Novo Genes Drives Protein-Coding Novelty in Drosophila. PMID:32253450
UBB pseudogene 4 encodes functional ubiquitin variants. PMID:32161257
Evidence for a novel overlapping coding sequence in POLG initiated at a CUG start codon. PMID:32138667
Therapeutic targeting of YY1/MZF1 axis by MZF1-uPEP inhibits aerobic glycolysis and neuroblastoma progression. PMID:32042322
Full-length NF-κB repressing factor contains an XRN2 binding domain. PMID:32011671
Enhancers Facilitate the Birth of De Novo Genes and Gene Integration into Regulatory Networks. PMID:31845961
Activity of the yeast cytoplasmic Hsp70 nucleotide-exchange factor Fes1 is regulated by reversible methionine oxidation. PMID:31806703
A Coding Sequence-Embedded Principle Governs Translational Reading Frame Fidelity. PMID:31549036
G-quadruplex located in the 5'UTR of the BAG-1 mRNA affects both its cap-dependent and cap-independent translation through global secondary structure maintenance. PMID:31504805
TIN2 Functions with TPP1/POT1 To Stimulate Telomerase Processivity. PMID:31383750
The Circadian Protein Nocturnin Regulates Metabolic Adaptation in Brown Adipose Tissue. PMID:31357170
Two Separation-of-Function Isoforms of Human TPP1 Dictate Telomerase Regulation in Somatic and Germ Cells. PMID:31216472
Charting DENR-dependent translation reinitiation uncovers predictive uORF features and links to circadian timekeeping via Clock. PMID:30982898
svist4get: a simple visualization tool for genomic tracks from sequencing experiments. PMID:30841857
LINC00116 codes for a mitochondrial peptide linking respiration and lipid metabolism. PMID:30796188
Trans-splicing of the C. elegans let-7 primary transcript developmentally regulates let-7 microRNA biogenesis and let-7 family microRNA activity. PMID:30770392
DeepRibo: a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns. PMID:30753697
Magnesium-sensitive upstream ORF controls PRL phosphatase expression to mediate energy metabolism. PMID:30718434
Trips-Viz: a transcriptome browser for exploring Ribo-Seq data. PMID:30239879
The Protein Coded by a Short Open Reading Frame, Not by the Annotated Coding Sequence, Is the Main Gene Product of the Dual-Coding Gene MIEF1. PMID:30181344
Endogenous retroviral signatures predict immunotherapy response in clear cell renal cell carcinoma. PMID:30137025
Alternative Splicing of the Delta-Opioid Receptor Gene Suggests Existence of New Functional Isoforms. PMID:30066306
PausePred and Rfeet: webtools for inferring ribosome pauses and visualizing footprint density from ribosome profiling data. PMID:30049792
Genome-Wide Changes in Protein Translation Efficiency Are Associated with Autism. PMID:29986017
Mitoregulin: A lncRNA-Encoded Microprotein that Supports Mitochondrial Supercomplexes and Respiratory Efficiency. PMID:29949756
TASEP modelling provides a parsimonious explanation for the ability of a single uORF to derepress translation during the integrated stress response. PMID:29932418
Ets-1 promoter-associated noncoding RNA regulates the NONO/ERG/Ets-1 axis to drive gastric cancer progression. PMID:29773901
The makings of the 'actin code': regulation of actin's biological function at the amino acid and nucleotide level. PMID:29739859
The exon-intron gene structure upstream of the initiation codon predicts translation efficiency. PMID:29684192
Identifying New Small Proteins in Escherichia coli. PMID:29645342
Ribosome profiling uncovers selective mRNA translation associated with eIF2 phosphorylation in erythroid progenitors. PMID:29634759
Recognition of the polycistronic nature of human genes is critical to understanding the genotype-phenotype relationship. PMID:29626081
A comprehensive catalog of predicted functional upstream open reading frames in humans. PMID:29562350
Recently Evolved Tumor Suppressor Transcript TP73-AS1 Functions as Sponge of Human-Specific miR-941. PMID:29474580
Csde1 binds transcripts involved in protein homeostasis and controls their expression in an erythroid cell line. PMID:29422612
Risk-Associated Long Noncoding RNA FOXD3-AS1 Inhibits Neuroblastoma Progression by Repressing PARP1-Mediated Activation of CTCF. PMID:29398485
Stop codon readthrough generates a C-terminally extended variant of the human vitamin D receptor with reduced calcitriol response. PMID:29386352
Long Noncoding RNA Discovery in Cardiovascular Disease: Decoding Form to Function. PMID:29301847
Diverse functions of homologous actin isoforms are defined by their nucleotide, rather than their amino acid sequence. PMID:29244021
Discovery of noncanonical translation initiation sites through mass spectrometric analysis of protein N termini. PMID:29162641
TranslatomeDB: a comprehensive database and cloud-based analysis platform for translatome sequencing data. PMID:29106630
Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins. PMID:29083303
riboviz: analysis and visualization of ribosome profiling datasets. PMID:29070028
ASXL gain-of-function truncation mutants: defective and dysregulated forms of a natural ribosomal frameshifting product? PMID:29037253
GWIPS-viz: 2018 update. PMID:28977460
Mining for Micropeptides. PMID:28528987
Computational analysis of nascent peptides that induce ribosome stalling and their proteomic distribution in Saccharomyces cerevisiae. PMID:28363900
Identification of long non-coding transcripts with feature selection: a comparative study. PMID:28335739
Unconventional Targeting of a Thiol Peroxidase to the Mitochondrial Intermembrane Space Facilitates Oxidative Protein Folding. PMID:28297675
Antisense transcription of the myotonic dystrophy locus yields low-abundant RNAs with and without (CAG)n repeat. PMID:28102759
Insights into the mechanisms of eukaryotic translation gained with ribosome profiling. PMID:27923997
ZFAS1: a long noncoding RNA associated with ribosomes in breast cancer cells. PMID:27871336
Global and cell-type specific properties of lincRNAs with ribosome occupancy. PMID:27738133
Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use. PMID:27436286
Transcriptional regulation of long-term potentiation. PMID:27318935
Systematic analysis of the PTEN 5' leader identifies a major AUU initiated proteoform. PMID:27249819
Ribosome reinitiation at leader peptides increases translation of bacterial proteins. PMID:27084079
Ribosome Footprint Profiling of Translation throughout the Genome. PMID:27015305
Integrated in vivo and in vitro nascent chain profiling reveals widespread translational pausing. PMID:26831095
RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data. PMID:26821742
Detecting actively translated open reading frames in ribosome profiling data. PMID:26657557
Death of a dogma: eukaryotic mRNAs can code for more than one protein. PMID:26578573
CTCF cooperates with noncoding RNA MYCNOS to promote neuroblastoma progression through facilitating MYCN expression. PMID:26549029
Ribosome profiling reveals the what, when, where and how of protein synthesis. PMID:26465719
A comparative genomics study on the effect of individual amino acids on ribosome stalling. PMID:26449596
RPFdb: a database for genome wide information of translated mRNA generated from ribosome profiling. PMID:26433228
The generation of knock-in mice expressing fluorescently tagged galanin receptors 1 and 2. PMID:26292267
The use of duplex-specific nuclease in ribosome profiling and a user-friendly software package for Ribo-seq data analysis. PMID:26286745
Cis-Acting Sequence Elements and Upstream Open Reading Frame in Mouse Utrophin-A 5'-UTR Repress Cap-Dependent Translation. PMID:26230628
A bacterial homolog YciH of eukaryotic translation initiation factor eIF1 regulates stress-related gene expression and is unlikely to be involved in translation initiation fidelity. PMID:26177339
Simple and inexpensive ribosome profiling analysis of mRNA translation. PMID:26164698
Comprehensive translational control of tyrosine kinase expression by upstream open reading frames. PMID:26096937
GWIPS-viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms. PMID:25736862
Translation of 5' leaders is pervasive in genes resistant to eIF2 repression. PMID:25621764
PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration. PMID:25510491
Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning. PMID:25413677
Translational control of immune responses: from transcripts to translatomes. PMID:24840981
Adjustments, extinction, and remains of selenocysteine incorporation machinery in the nematode lineage. PMID:24817701
Ribosome profiling: new views of translation, from single codons to genome scale. PMID:24468696 -
GWIPS-viz: 2018 update
PubMed citations: 26.
26 articles citing: GWIPS-viz: 2018 update
Oncopeptide MBOP Encoded by LINC01234 Promotes Colorectal Cancer through MAPK Signaling Pathway. PMID:35565466
Mitochondria-derived peptides in aging and healthspan. PMID:35499074
Evaluating ribosomal frameshifting in CCR5 mRNA decoding. PMID:35444316
The Identity of the Constriction Region of the Ribosomal Exit Tunnel Is Important to Maintain Gene Expression in Escherichia coli. PMID:35311583
Evolutionarily conserved inhibitory uORFs sensitize Hox mRNA translation to start codon selection stringency. PMID:35217614
Upstream open reading frame with NOTCH2NLC GGC expansion generates polyglycine aggregates and disrupts nucleocytoplasmic transport: implications for polyglycine diseases. PMID:34694469
Discovery of a small protein-encoding cis-regulatory overlapping gene of the tumor suppressor gene Scribble in humans. PMID:34535749
Investigation of LINC00493/SMIM26 Gene Suggests Its Dual Functioning at mRNA and Protein Level. PMID:34445188
Determinants of genome-wide distribution and evolution of uORFs in eukaryotes. PMID:33597535
The FUS gene is dual-coding with both proteins contributing to FUS-mediated toxicity. PMID:33226175
Translation initiation downstream from annotated start codons in human mRNAs coevolves with the Kozak context. PMID:32669370
Complex Analysis of Retroposed Genes' Contribution to Human Genome, Proteome and Transcriptome. PMID:32408516
Evidence for a novel overlapping coding sequence in POLG initiated at a CUG start codon. PMID:32138667
RiboVIEW: a computational framework for visualization, quality control and statistical analysis of ribosome profiling data. PMID:31777932
Transcriptome visualization and data availability at the Saccharomyces Genome Database. PMID:31612944
Gene Fusions Derived by Transcriptional Readthrough are Driven by Segmental Duplication in Human. PMID:31400206
PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms. PMID:31040227
svist4get: a simple visualization tool for genomic tracks from sequencing experiments. PMID:30841857
Magnesium-sensitive upstream ORF controls PRL phosphatase expression to mediate energy metabolism. PMID:30718434
Translatomics: The Global View of Translation. PMID:30626072
RPFdb v2.0: an updated database for genome-wide information of translated mRNA generated from ribosome profiling. PMID:30335166
Trips-Viz: a transcriptome browser for exploring Ribo-Seq data. PMID:30239879
PausePred and Rfeet: webtools for inferring ribosome pauses and visualizing footprint density from ribosome profiling data. PMID:30049792
A Plant Biologist's Toolbox to Study Translation. PMID:30013583
HRPDviewer: human ribosome profiling data viewer. PMID:30010738
TASEP modelling provides a parsimonious explanation for the ability of a single uORF to derepress translation during the integrated stress response. PMID:29932418 -
GWIPS-viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms
PubMed citations: 11.
11 articles citing: GWIPS-viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms
Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data. PMID:33950201
Evidence for a novel overlapping coding sequence in POLG initiated at a CUG start codon. PMID:32138667
GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes. PMID:30862647
A novel form of JARID2 is required for differentiation in lineage-committed cells. PMID:30573669
PausePred and Rfeet: webtools for inferring ribosome pauses and visualizing footprint density from ribosome profiling data. PMID:30049792
Genome-Wide Changes in Protein Translation Efficiency Are Associated with Autism. PMID:29986017
RNA editing by ADAR1 leads to context-dependent transcriptome-wide changes in RNA secondary structure. PMID:29129909
GWIPS-viz: 2018 update. PMID:28977460
PTEN proteoforms in biology and disease. PMID:28289760
Comparative Analysis of Mitochondrial N-Termini from Mouse, Human, and Yeast. PMID:28122942
Insights into the mechanisms of eukaryotic translation gained with ribosome profiling. PMID:27923997 -
The GWIPS-viz Browser
PubMed citations: 0.
0 articles citing: The GWIPS-viz Browser
- http://dx.doi.org/10.1093/nar/gkt1035
Tags:
Tags
More detailed information about this field from each metasource.
gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:29.885885
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
rna sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
regulation of gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
transcript
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
translation initiation
metasource: Fairsharing.org
version: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
human genome databases, maps and viewers
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
gene expression
metasource: Fairsharing.orgversion: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:29.885885
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
rna sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
regulation of gene expression
metasource: Fairsharing.orgversion: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
transcript
metasource: Fairsharing.orgversion: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
translation initiation
metasource: Fairsharing.orgversion: FAIRsharing.org: GWIPS-viz; GWIPS-viz; DOI: https://doi.org/10.25504/FAIRsharing.ym3jjm; Last edited: Jan. 8, 2020, 2:09 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
human genome databases, maps and viewers
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
gene expression gene expression genome rna sequence regulation of gene expression transcript translation initiation human and other vertebrate genomes human genome, maps and viewers
Need help integrating and/or managing biomedical data?