Fly-FISH
Fly-FISH documents the expression and localization patterns of Drosophila mRNAs at the cellular and subcellular level during early embryogenesis and third instar larval tissues. A high-resolution, high-throughput fluorescence detection method is used to detect expressed mRNAs. The data can be accessed by searching the localization categories, searching for specific genes or browsing the list of tested genes.
Description
More detailed information about this field from each metasource.
Fly-FISH documents the expression and localization patterns of Drosophila mRNAs at the cellular and subcellular level during early embryogenesis and third instar larval tissues. A high-resolution, high-throughput fluorescence detection method is used to detect expressed mRNAs. The data can be accessed by searching the localization categories, searching for specific genes or browsing the list of tested genes.
metasource: Fairsharing.orgversion: None
This database documents the expression and localization patterns of Drosophila mRNAs at the cellular and subcellular level during early embryogenesis and third instar larval tissues. A high-resolution, high-throughput fluorescence detection method is used to detect expressed mRNAs. The data can be accessed by searching the localization categories, searching for specific genes or browsing the list of tested genes.
metasource: re3data.orgversion: re3data.org: Fly-FISH; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8F last accessed: 2022-11-04
Webpage:
http://fly-fish.ccbr.utoronto.ca/Webpage
More detailed information about this field from each metasource.
http://fly-fish.ccbr.utoronto.ca/
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: Fly-FISH; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8F last accessed: 2022-11-04
Licence:
Name: CopyrightsLicence name
More detailed information about this field from each metasource.
Copyrights
metasource: re3data.orgversion: re3data.org: Fly-FISH; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8F last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
http://fly-fish.ccbr.utoronto.ca
metasource: re3data.orgversion: re3data.org: Fly-FISH; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8F last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function
PMID: 17923096
metasource: Fairsharing.org
version: None
Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs
PMID: 26944682
metasource: Fairsharing.org
version: None
Publications
More detailed information about this field from each metasource.
Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function
PMID: 17923096
metasource: Fairsharing.org
version: None
Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs
PMID: 26944682
metasource: Fairsharing.org
version: None
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Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function
PubMed citations: 448.
448 articles citing: Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function
Circ-LocNet: A Computational Framework for Circular RNA Sub-Cellular Localization Prediction. PMID:35897818
Liquid-liquid phase separation in tumor biology. PMID:35803926
An introduction to spatial transcriptomics for biomedical research. PMID:35761361
Genome-Wide Identification of Long Noncoding RNA and Their Potential Interactors in ISWI Mutants. PMID:35682924
Intronic gRNAs for the Construction of Minimal Gene Drive Systems. PMID:35646834
Identification of embryonic RNA granules that act as sites of mRNA translation after changing their physical properties. PMID:35620421
Halo-seq: An RNA Proximity Labeling Method for the Isolation and Analysis of Subcellular RNA Populations. PMID:35532287
Transcriptional coupling of distant regulatory genes in living embryos. PMID:35508662
Interrogating RNA and protein spatial subcellular distribution in smFISH data with DypFISH. PMID:35474672
Dynamics of maternal gene expression in Rhodnius prolixus. PMID:35449214
Vasa nucleates asymmetric translation along the mitotic spindle during unequal cell divisions. PMID:35444184
A Proposed Role for Interactions between Argonautes, miRISC, and RNA Binding Proteins in the Regulation of Local Translation in Neurons and Glia. PMID:35444007
Signed, sealed, and delivered: RNA localization and translation at centrosomes. PMID:35420887
The Physiological Roles of the Exon Junction Complex in Development and Diseases. PMID:35406756
In Vivo Visualization of Mobile mRNA Particles in Plants Using BglG. PMID:35349157
Computational modeling offers new insight into Drosophila germ granule development. PMID:35288123
Museum of spatial transcriptomics. PMID:35273392
Simultaneous expansion microscopy imaging of proteins and mRNAs via dual-ExM. PMID:35233025
Drosophila centrocortin is dispensable for centriole duplication but contributes to centrosome separation. PMID:35100335
The Role of Alternative Polyadenylation in the Regulation of Subcellular RNA Localization. PMID:35096024
Transcriptome-scale methods for uncovering subcellular RNA localization mechanisms. PMID:34998919
Subcellular Transcriptomics and Proteomics: A Comparative Methods Review. PMID:34922010
Exploring the Diverse Functional and Regulatory Consequences of Alternative Splicing in Development and Disease. PMID:34899861
Analysis of subcellular transcriptomes by RNA proximity labeling with Halo-seq. PMID:34875090
Translation-dependent mRNA localization to Caenorhabditis elegans adherens junctions. PMID:34846063
The Fly Homologue of MFSD11 Is Possibly Linked to Nutrient Homeostasis and Has a Potential Role in Locomotion: A First Characterization of the Atypical Solute Carrier CG18549 in Drosophila Melanogaster. PMID:34821824
The Identification and Functional Analysis of mRNA Localizing to Centrosomes. PMID:34805187
Prediction of RNA subcellular localization: Learning from heterogeneous data sources. PMID:34765919
Cardiomyocyte Microtubules: Control of Mechanics, Transport, and Remodeling. PMID:34614374
Live and fixed imaging of translation sites at single mRNA resolution in the Drosophila embryo. PMID:34585149
RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation. PMID:34551440
Actinin BioID reveals sarcomere crosstalk with oxidative metabolism through interactions with IGF2BP2. PMID:34380038
Quantitative imaging of transcription in living Drosophila embryos reveals the impact of core promoter motifs on promoter state dynamics. PMID:34301936
Oocyte specific lncRNA variant Rose influences oocyte and embryo development. PMID:34278057
The tweety Gene Family: From Embryo to Disease. PMID:34262434
Mechanical Fractionation of Cultured Neuronal Cells into Cell Body and Neurite Fractions. PMID:34250214
Spatio-temporal mRNA tracking in the early zebrafish embryo. PMID:34099733
mRNA Targeting, Transport and Local Translation in Eukaryotic Cells: From the Classical View to a Diversity of New Concepts. PMID:34092811
Nuclear compartmentalization of TERT mRNA and TUG1 lncRNA is driven by intron retention. PMID:34083519
Intracellular mRNA transport and localized translation. PMID:33837370
mRNALocater: Enhance the prediction accuracy of eukaryotic mRNA subcellular localization by using model fusion strategy. PMID:33823302
Methods and tools for spatial mapping of single-cell RNAseq clusters in Drosophila. PMID:33713129
The Roles of the LIM Domain Proteins in Drosophila Cardiac and Hematopoietic Morphogenesis. PMID:33681304
Variability in mRNA translation: a random matrix theory approach. PMID:33674667
A choreography of centrosomal mRNAs reveals a conserved localization mechanism involving active polysome transport. PMID:33649340
Core Fermentation (CoFe) granules focus coordinated glycolytic mRNA localization and translation to fuel glucose fermentation. PMID:33554071
LNCcation: lncRNA localization and function. PMID:33464299
Translation initiation and its relevance in colorectal cancer. PMID:33382175
MirLocPredictor: A ConvNet-Based Multi-Label MicroRNA Subcellular Localization Predictor by Incorporating k-Mer Positional Information. PMID:33316943
Think globally, act locally: Centrosome-localized mRNAs ensure mitotic fidelity. PMID:33216116
centrocortin RNA localization to centrosomes is regulated by FMRP and facilitates error-free mitosis. PMID:33196763
Subcellular mRNA Localization Regulates Ribosome Biogenesis in Migrating Cells. PMID:33171110
Epigenetic conflict on a degenerating Y chromosome increases mutational burden in Drosophila males. PMID:33139741
RNA transport from transcription to localized translation: a single molecule perspective. PMID:33111627
From whole-mount to single-cell spatial assessment of gene expression in 3D. PMID:33097816
Quantitative analysis of subcellular distributions with an open-source, object-based tool. PMID:32973081
Understanding microcephaly through the study of centrosome regulation in Drosophila neural stem cells. PMID:32897294
Elongation inhibitors do not prevent the release of puromycylated nascent polypeptide chains from ribosomes. PMID:32844746
New Generations of MS2 Variants and MCP Fusions to Detect Single mRNAs in Living Eukaryotic Cells. PMID:32710406
Principles and mechanisms of asymmetric cell division. PMID:32601056
Organizing the oocyte: RNA localization meets phase separation. PMID:32591084
Patterning the Drosophila embryo: A paradigm for RNA-based developmental genetic regulation. PMID:32543002
FMRP promotes RNA localization to neuronal projections through interactions between its RGG domain and G-quadruplex RNA sequences. PMID:32510328
A-kinase-anchoring protein 1 (dAKAP1)-based signaling complexes coordinate local protein synthesis at the mitochondrial surface. PMID:32482893
Proximity-CLIP and Expedited Non-Radioactive Library Preparation of Small RNA Footprints for Next-Generation Sequencing. PMID:32438484
mRNALoc: a novel machine-learning based in-silico tool to predict mRNA subcellular localization. PMID:32421834
A guiding torch at the poles: the multiple roles of spindle microtubule-organizing centers during cell division. PMID:32401610
Mechanisms and consequences of subcellular RNA localization across diverse cell types. PMID:32291836
The conserved regulatory basis of mRNA contributions to the early Drosophila embryo differs between the maternal and zygotic genomes. PMID:32226006
RNA-GPS predicts high-resolution RNA subcellular localization and highlights the role of splicing. PMID:32220894
Sex and suicide: The curious case of Toll-like receptors. PMID:32203540
New sequencing methodologies reveal interplay between multiple RNA-binding proteins and their RNAs. PMID:32193580
Temporal specificity and heterogeneity of Drosophila immune cells. PMID:32162708
Comprehensive Genome-Wide Approaches to Activity-Dependent Translational Control in Neurons. PMID:32111062
Zipcode Binding Protein 1 (ZBP1; IGF2BP1): A Model for Sequence-Specific RNA Regulation. PMID:32086331
Makorin 1 controls embryonic patterning by alleviating Bruno1-mediated repression of oskar translation. PMID:31978041
Compartmentalized oskar degradation in the germ plasm safeguards germline development. PMID:31909715
3' UTRs Regulate Protein Functions by Providing a Nurturing Niche during Protein Synthesis. PMID:31900325
Specific Anchoring and Local Translation of Poxviral ATI mRNA at Cytoplasmic Inclusion Bodies. PMID:31776279
Systematic Discovery of Endogenous Human Ribonucleoprotein Complexes. PMID:31665645
An Atlas of Transcription Factors Expressed in Male Pupal Terminalia of Drosophila melanogaster. PMID:31619460
mRNA Localization in Plant Cells. PMID:31611420
Transcriptomic and functional analysis of the oosome, a unique form of germ plasm in the wasp Nasonia vitripennis. PMID:31601213
Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development. PMID:31553718
Spatio-temporal expression of ANK2 promotes cytokinesis in oocytes. PMID:31511568
Prediction of mRNA subcellular localization using deep recurrent neural networks. PMID:31510698
The Egalitarian binding partners Dynein light chain and Bicaudal-D act sequentially to link mRNA to the Dynein motor. PMID:31391195
Early genome activation in Drosophila is extensive with an initial tendency for aborted transcripts and retained introns. PMID:31235656
Maternal Nanos inhibits Importin-α2/Pendulin-dependent nuclear import to prevent somatic gene expression in the Drosophila germline. PMID:31091233
Asymmetric Inheritance of Cell Fate Determinants: Focus on RNA. PMID:31075989
Regulatory principles governing the maternal-to-zygotic transition: insights from Drosophila melanogaster. PMID:30977698
A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs. PMID:30923056
Import of Non-Coding RNAs into Human Mitochondria: A Critical Review and Emerging Approaches. PMID:30917553
Asymmetric distribution of glucose transporter mRNA provides a growth advantage in yeast. PMID:30910878
Translation factor mRNA granules direct protein synthetic capacity to regions of polarized growth. PMID:30877141
Rapid embryonic cell cycles defer the establishment of heterochromatin by Eggless/SetDB1 in Drosophila. PMID:30808658
Ciphers and Executioners: How 3'-Untranslated Regions Determine the Fate of Messenger RNAs. PMID:30740123
In-stem molecular beacon targeted to a 5'-region of tRNA inclusive of the D arm that detects mature tRNA with high sensitivity. PMID:30695081
Imaging Flies by Fluorescence Microscopy: Principles, Technologies, and Applications. PMID:30626639
Dynamic multifactor hubs interact transiently with sites of active transcription in Drosophila embryos. PMID:30589412
Mapping Neurotransmitter Identity in the Whole-Mount Drosophila Brain Using Multiplex High-Throughput Fluorescence in Situ Hybridization. PMID:30563859
The key protein of endosomal mRNP transport Rrm4 binds translational landmark sites of cargo mRNAs. PMID:30552148
Imaging the Life and Death of mRNAs in Single Cells. PMID:30510061
It takes two (centrioles) to tango. PMID:30496124
Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments. PMID:30478324
Recent progress in single-molecule studies of mRNA localization in vivo. PMID:30336727
Distinct cis-acting elements mediate targeting and clustering of Drosophila polar granule mRNAs. PMID:30333216
Transcriptional quiescence in primordial germ cells. PMID:30280955
Phase transitioned nuclear Oskar promotes cell division of Drosophila primordial germ cells. PMID:30260314
Emerging mechanisms of asymmetric stem cell division. PMID:30232100
Localization and translation control of slam in Drosophila cellularization. PMID:30211628
RNA-Binding Protein RBP-P Is Required for Glutelin and Prolamine mRNA Localization in Rice Endosperm Cells. PMID:30190374
The ABD on the nascent polypeptide and PH domain are required for the precise Anillin localization in Drosophila syncytial blastoderm. PMID:30150713
Fluorescence Imaging Methods to Investigate Translation in Single Cells. PMID:30082468
Translational Control during Developmental Transitions. PMID:30082467
The translational regulation of maternal mRNAs in time and space. PMID:29972882
Dpp regulates autophagy-dependent midgut removal and signals to block ecdysone production. PMID:29959404
The RNA-binding complex ESCRT-II in Xenopus laevis eggs recognizes purine-rich sequences through its subunit, Vps25. PMID:29903915
Asymmetric distribution of biomolecules of maternal origin in the Xenopus laevis egg and their impact on the developmental plan. PMID:29844480
Consequences of resistance evolution in a Cas9-based sex conversion-suppression gene drive for insect pest management. PMID:29844184
Patterns of chromatin accessibility along the anterior-posterior axis in the early Drosophila embryo. PMID:29727464
Co-translational protein targeting facilitates centrosomal recruitment of PCNT during centrosome maturation in vertebrates. PMID:29708497
RNA localization regulates diverse and dynamic cellular processes. PMID:29653028
Flying the RNA Nest: Drosophila Reveals Novel Insights into the Transcriptome Dynamics of Early Development. PMID:29615554
Close encounters of the RNAi kind: the silencing life of the adherens junctions. PMID:29587176
Enzymatic modification of 5'-capped RNA with a 4-vinylbenzyl group provides a platform for photoclick and inverse electron-demand Diels-Alder reaction. PMID:29560223
High-Sensitivity and High-Resolution In Situ Hybridization of Coding and Long Non-coding RNAs in Vertebrate Ovaries and Testes. PMID:29507535
G Protein-Coupled Receptors As Regulators of Localized Translation: The Forgotten Pathway? PMID:29456523
RNA Biology in Retinal Development and Disease. PMID:29395379
Single-cell nanobiopsy reveals compartmentalization of mRNAs within neuronal cells. PMID:29378846
Protecting and Diversifying the Germline. PMID:29378808
Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking. PMID:29239719
Cell Cycle Control by Nuclear Sequestration of CDC20 and CDH1 mRNA in Plant Stem Cells. PMID:29225038
Slam protein dictates subcellular localization and translation of its own mRNA. PMID:29206227
Dynamic m6A modification regulates local translation of mRNA in axons. PMID:29186567
Molecular simulations of cellular processes. PMID:29185136
High Resolution Fluorescent In Situ Hybridization in Drosophila Embryos and Tissues Using Tyramide Signal Amplification. PMID:29155736
Multifunctional RNA Binding Protein OsTudor-SN in Storage Protein mRNA Transport and Localization. PMID:29084903
CeFra-seq reveals broad asymmetric mRNA and noncoding RNA distribution profiles in Drosophila and human cells. PMID:29079635
RNA Regulations and Functions Decoded by Transcriptome-wide RNA Structure Probing. PMID:29031843
Gene Tagging Strategies To Assess Protein Expression, Localization, and Function in Drosophila. PMID:28978772
RNA localization is a key determinant of neurite-enriched proteome. PMID:28928394
Cadherin complexes recruit mRNAs and RISC to regulate epithelial cell signaling. PMID:28877994
Global mRNA polarization regulates translation efficiency in the intestinal epithelium. PMID:28798045
Multiple cis-acting signals, some weak by necessity, collectively direct robust transport of oskar mRNA to the oocyte. PMID:28760927
Maintenance of Miranda Localization in Drosophila Neuroblasts Involves Interaction with the Cognate mRNA. PMID:28690114
FlyExpress 7: An Integrated Discovery Platform To Study Coexpressed Genes Using in Situ Hybridization Images in Drosophila. PMID:28667017
Non-model model organisms. PMID:28662661
Single molecule fluorescence in situ hybridisation for quantitating post-transcriptional regulation in Drosophila brains. PMID:28651965
mRNA localization in metazoans: A structural perspective. PMID:28640665
Simple Expression Domains Are Regulated by Discrete CRMs During Drosophila Oogenesis. PMID:28634244
Data for the generation of RNA spatiotemporal distributions and interpretation of Chk1 and SLBP protein depletion phenotypes during Drosophila embryogenesis. PMID:28560279
Characterization of RBP9 and RBP10, two developmentally regulated RNA-binding proteins in Trypanosoma brucei. PMID:28381627
The developmental proteome of Drosophila melanogaster. PMID:28381612
Small Luggage for a Long Journey: Transfer of Vesicle-Enclosed Small RNA in Interspecies Communication. PMID:28360889
Moving messages in the developing brain-emerging roles for mRNA transport and local translation in neural stem cells. PMID:28304078
Screening the Molecular Framework Underlying Local Dendritic mRNA Translation. PMID:28286470
Regulation of 4E-BP1 activity in the mammalian oocyte. PMID:28272965
RNP transport in cell biology: the long and winding road. PMID:28258033
Multivalent Molecules as Modulators of RNA Granule Size and Composition. PMID:28242011
Live Cell Imaging of Endogenous mRNA Using RNA-Based Fluorescence "Turn-On" Probe. PMID:28103687
Quantitative Differences in a Single Maternal Factor Determine Survival Probabilities among Drosophila Germ Cells. PMID:28065608
Subcellular Localization of HIV-1 gag-pol mRNAs Regulates Sites of Virion Assembly. PMID:28053097
APC/CFzr/Cdh1-Dependent Regulation of Planar Cell Polarity Establishment via Nek2 Kinase Acting on Dishevelled. PMID:28041906
A method for detecting single mRNA molecules in Arabidopsis thaliana. PMID:28035231
A role for Gle1, a regulator of DEAD-box RNA helicases, at centrosomes and basal bodies. PMID:28035044
The contribution of intrinsically disordered regions to protein function, cellular complexity, and human disease. PMID:27911701
Diverse activities of viral cis-acting RNA regulatory elements revealed using multicolor, long-term, single-cell imaging. PMID:27903772
Single-Cell and Single-Molecule Analysis of Gene Expression Regulation. PMID:27893965
A new isoform of Drosophila non-muscle Tropomyosin 1 interacts with Kinesin-1 and functions in oskar mRNA localization. PMID:27802167
The mRNA transportome of the BicD/Egl transport machinery. PMID:27801632
bicoid mRNA localises to the Drosophila oocyte anterior by random Dynein-mediated transport and anchoring. PMID:27791980
A widely employed germ cell marker is an ancient disordered protein with reproductive functions in diverse eukaryotes. PMID:27718356
Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis. PMID:27678375
Visualization of single endogenous polysomes reveals the dynamics of translation in live human cells. PMID:27597760
Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs. PMID:27559081
Volvox: A simple algal model for embryogenesis, morphogenesis and cellular differentiation. PMID:27451296
Loss of function of the Drosophila Ninein-related centrosomal protein Bsg25D causes mitotic defects and impairs embryonic development. PMID:27422905
Global changes of the RNA-bound proteome during the maternal-to-zygotic transition in Drosophila. PMID:27378189
The bicoid mRNA localization factor Exuperantia is an RNA-binding pseudonuclease. PMID:27376588
Comparative transcriptomic analysis of human and Drosophila extracellular vesicles. PMID:27282340
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
The mRNA-bound proteome of the early fly embryo. PMID:27197210
Stability-driven nonnegative matrix factorization to interpret spatial gene expression and build local gene networks. PMID:27071099
HIV-1 and M-PMV RNA Nuclear Export Elements Program Viral Genomes for Distinct Cytoplasmic Trafficking Behaviors. PMID:27070420
Germ Plasm Biogenesis--An Oskar-Centric Perspective. PMID:26970648
Intra-axonal protein synthesis in development and beyond. PMID:26970010
Sequence-dependent but not sequence-specific piRNA adhesion traps mRNAs to the germ plasm. PMID:26950602
Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs. PMID:26944682
Distal Alternative Last Exons Localize mRNAs to Neural Projections. PMID:26907613
A genome-wide resource for the analysis of protein localisation in Drosophila. PMID:26896675
The Role of Maternal-Effect Genes in Mammalian Development: Are Mammalian Embryos Really an Exception? PMID:26892267
A high-throughput pipeline for the production of synthetic antibodies for analysis of ribonucleoprotein complexes. PMID:26847261
Fixed and live visualization of RNAs in Drosophila oocytes and embryos. PMID:26827935
Quantitative spatial analysis of transcripts in multinucleate cells using single-molecule FISH. PMID:26690072
CircInteractome: A web tool for exploring circular RNAs and their interacting proteins and microRNAs. PMID:26669964
The Ran Pathway in Drosophila melanogaster Mitosis. PMID:26636083
Tandem Spinach Array for mRNA Imaging in Living Bacterial Cells. PMID:26612428
The female gametophyte: an emerging model for cell type-specific systems biology in plant development. PMID:26579157
Progress and challenges for chemical probing of RNA structure inside living cells. PMID:26575240
Regulation of Heart Rate in Drosophila via Fragile X Mental Retardation Protein. PMID:26571124
Structure of Drosophila Oskar reveals a novel RNA binding protein. PMID:26324911
Aubergine iCLIP Reveals piRNA-Dependent Decay of mRNAs Involved in Germ Cell Development in the Early Embryo. PMID:26257181
Life as a moving fluid: fate of cytoplasmic macromolecules in dynamic fungal syncytia. PMID:26226449
Localized translation near the mitochondrial outer membrane: An update. PMID:26151724
Drosophila Imp iCLIP identifies an RNA assemblage coordinating F-actin formation. PMID:26054396
Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition. PMID:25962635
Nucleus to Synapse Nesprin1 Railroad Tracks Direct Synapse Maturation through RNA Localization. PMID:25959729
Shaped singular spectrum analysis for quantifying gene expression, with application to the early Drosophila embryo. PMID:25945341
Endogenously tagged rab proteins: a resource to study membrane trafficking in Drosophila. PMID:25942626
Translational activation of oskar mRNA: reevaluation of the role and importance of a 5' regulatory element [corrected]. PMID:25938537
Independent and coordinate trafficking of single Drosophila germ plasm mRNAs. PMID:25848747
Systematic imaging reveals features and changing localization of mRNAs in Drosophila development. PMID:25838129
Analysis of RNA Interference Lines Identifies New Functions of Maternally-Expressed Genes Involved in Embryonic Patterning in Drosophila melanogaster. PMID:25834215
Non-coding RNA: a new frontier in regulatory biology. PMID:25821635
Single cell transcriptomics: methods and applications. PMID:25806353
In vivo mapping of the functional regions of the DEAD-box helicase Vasa. PMID:25795910
Strength in numbers: quantitative single-molecule RNA detection assays. PMID:25645249
Non-coding RNA derived from a conservative subtelomeric tandem repeat in chicken and Japanese quail somatic cells. PMID:25610495
Specific interaction of KIF11 with ZBP1 regulates the transport of β-actin mRNA and cell motility. PMID:25588836
Neuron-wide RNA transport combines with netrin-mediated local translation to spatially regulate the synaptic proteome. PMID:25569157
In the right place at the right time: visualizing and understanding mRNA localization. PMID:25549890
mRNP granules. Assembly, function, and connections with disease. PMID:25531407
Evidence for multiple, distinct ADAR-containing complexes in Xenopus laevis. PMID:25519486
Genomic analysis of RNA localization. PMID:25483039
mRNA localization in the Drosophila germline. PMID:25482896
Identification of genes associated with resilience/vulnerability to sleep deprivation and starvation in Drosophila. PMID:25409104
An inside-out origin for the eukaryotic cell. PMID:25350791
Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition. PMID:25313869
Batch Mode Active Sampling based on Marginal Probability Distribution Matching. PMID:25309807
Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library. PMID:25294943
Control of cell migration through mRNA localization and local translation. PMID:25264217
Subcellular transcriptome alterations in a cell culture model of spinal muscular atrophy point to widespread defects in axonal growth and presynaptic differentiation. PMID:25246652
Asymmetric mRNA localization contributes to fidelity and sensitivity of spatially localized systems. PMID:25150862
Zygotic genome activation during the maternal-to-zygotic transition. PMID:25150012
The exon junction complex is required for definition and excision of neighboring introns in Drosophila. PMID:25081352
Transcript length mediates developmental timing of gene expression across Drosophila. PMID:25069653
Discovering non-coding RNA elements in Drosophila 3' untranslated regions. PMID:24989864
RNA stimulates Aurora B kinase activity during mitosis. PMID:24968351
PIWI homologs mediate histone H4 mRNA localization to planarian chromatoid bodies. PMID:24903754
Functional analysis of the Drosophila embryonic germ cell transcriptome by RNA interference. PMID:24896584
Computational analysis of conserved RNA secondary structure in transcriptomes and genomes. PMID:24895857
Insights into RNA structure and function from genome-wide studies. PMID:24821474
Remote control of gene function by local translation. PMID:24679524
Resources for functional genomics studies in Drosophila melanogaster. PMID:24653003
Quality control: Is there quality control of localized mRNAs? PMID:24637320
hCLE/C14orf166 associates with DDX1-HSPC117-FAM98B in a novel transcription-dependent shuttling RNA-transporting complex. PMID:24608264
Transcriptomic analysis of differentially expressed genes in the Ras1(CA)-overexpressed and wildtype posterior silk glands. PMID:24606580
Highly multiplexed subcellular RNA sequencing in situ. PMID:24578530
A stem-loop structure directs oskar mRNA to microtubule minus ends. PMID:24572808
Multiple RNA binding protein complexes interact with the rice prolamine RNA cis-localization zipcode sequences. PMID:24488967
Functional signature for the recognition of specific target mRNAs by human Staufen1 protein. PMID:24470147
Trichinella spiralis, potential model nematode for epigenetics and its implication in metazoan parasitism. PMID:24454291
Comparing mRNA levels using in situ hybridization of a target gene and co-stain. PMID:24434507
Single molecule fluorescence approaches shed light on intracellular RNAs. PMID:24417544
myFX: a turn-key software for laboratory desktops to analyze spatial patterns of gene expression in Drosophila embryos. PMID:24413523
Population-level expression variability of mitochondrial DNA-encoded genes in humans. PMID:24398800
Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding protein. PMID:24393533
A mesh generation and machine learning framework for Drosophila gene expression pattern image analysis. PMID:24373308
mRNA localization mechanisms in Trypanosoma cruzi. PMID:24324687
Automated annotation of developmental stages of Drosophila embryos in images containing spatial patterns of expression. PMID:24300439
Image-level and group-level models for Drosophila gene expression pattern annotation. PMID:24299119
Analogue encoding of physicochemical properties of proteins in their cognate messenger RNAs. PMID:24253588
Phosphoproteomic analysis of protein phosphorylation networks in Tetrahymena thermophila, a model single-celled organism. PMID:24200585
The central dogma decentralized: new perspectives on RNA function and local translation in neurons. PMID:24183017
Accelerated homologous recombination and subsequent genome modification in Drosophila. PMID:24154526
Optimized RNA ISH, RNA FISH and protein-RNA double labeling (IF/FISH) in Drosophila ovaries. PMID:24113787
Zebrafish embryonic neurons transport messenger RNA to axons and growth cones in vivo. PMID:24089481
Learning Incoherent Sparse and Low-Rank Patterns from Multiple Tasks. PMID:24077658
Cyclin B1 mRNA translation is temporally controlled through formation and disassembly of RNA granules. PMID:24062337
Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression. PMID:23951250
RNA-binding protein RBM8A (Y14) and MAGOH localize to centrosome in human A549 cells. PMID:23949737
Genome-wide analysis of Staufen-associated mRNAs identifies secondary structures that confer target specificity. PMID:23945942
Drosophila Hephaestus/polypyrimidine tract binding protein is required for dorso-ventral patterning and regulation of signalling between the germline and soma. PMID:23894566
Evidence of direct complementary interactions between messenger RNAs and their cognate proteins. PMID:23868089
Production of Xenopus tropicalis egg extracts to identify microtubule-associated RNAs. PMID:23851481
A compendium of RNA-binding motifs for decoding gene regulation. PMID:23846655
Immediate translation of Formin DIAPH1 mRNA after its exiting the nucleus is required for its perinuclear localization in fibroblasts. PMID:23840831
Quantitative assessment of ratiometric bimolecular beacons as a tool for imaging single engineered RNA transcripts and measuring gene expression in living cells. PMID:23814183
Evidence against a germ plasm in the milkweed bug Oncopeltus fasciatus, a hemimetabolous insect. PMID:23789106
Protein aggregation behavior regulates cyclin transcript localization and cell-cycle control. PMID:23769973
mRNA on the move: the road to its biological destiny. PMID:23720759
Organelle asymmetry for proper fitness, function, and fate. PMID:23681659
Spatial profiling of nuclear receptor transcription patterns over the course of Drosophila development. PMID:23665880
RNA localization in Xenopus oocytes uses a core group of trans-acting factors irrespective of destination. PMID:23645708
Unscrambling butterfly oogenesis. PMID:23622113
A methodology to infer gene networks from spatial patterns of expression--an application to fluorescence in situ hybridization images. PMID:23591446
Fragile hearts: new insights into translational control in cardiac muscle. PMID:23582851
Prediction of Drosophila melanogaster gene function using Support Vector Machines. PMID:23547736
A convex formulation for learning a shared predictive structure from multiple tasks. PMID:23520249
Comparative transcriptomics of early dipteran development. PMID:23432914
The maternal transcriptome of the crustacean Parhyale hawaiensis is inherited asymmetrically to invariant cell lineages of the ectoderm and mesoderm. PMID:23418507
Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae. PMID:23409723
Whole mount RNA fluorescent in situ hybridization of Drosophila embryos. PMID:23407302
Molecular insights into intracellular RNA localization. PMID:23351709
Localization of rRNA transcribed spacer domains in the nucleolinus and maternal procentrosomes of surf clam (Spisula) oocytes. PMID:23324608
Visualization of endoplasmic reticulum localized mRNAs in mammalian cells. PMID:23271194
Drosophila Syncrip binds the gurken mRNA localisation signal and regulates localised transcripts during axis specification. PMID:23213441
Taking a cellular road-trip: mRNA transport and anchoring. PMID:23200723
Identification of maternally-loaded RNA transcripts in unfertilized eggs of Tribolium castaneum. PMID:23181844
Notch-mediated suppression of TSC2 expression regulates cell differentiation in the Drosophila intestinal stem cell lineage. PMID:23144631
Inducible control of subcellular RNA localization using a synthetic protein-RNA aptamer interaction. PMID:23056498
β-Actin mRNA compartmentalization enhances focal adhesion stability and directs cell migration. PMID:22948660
Exploring spatial patterns of gene expression from fruit fly embryogenesis on the iPhone. PMID:22923306
Quantitative biology of single neurons. PMID:22915636
mRNA localization: an orchestration of assembly, traffic and synthesis. PMID:22913533
Spatial regulation of translation through RNA localization. PMID:22912650
Principles and roles of mRNA localization in animal development. PMID:22912410
Transcriptome-wide regulation of pre-mRNA splicing and mRNA localization by muscleblind proteins. PMID:22901804
mRNA localization and translational control in Drosophila oogenesis. PMID:22865893
Sequence signatures of direct complementarity between mRNAs and cognate proteins on multiple levels. PMID:22844092
An unbiased analysis method to quantify mRNA localization reveals its correlation with cell motility. PMID:22832165
Assembly of mRNA-protein complexes for directional mRNA transport in eukaryotes--an overview. PMID:22708485
Joint stage recognition and anatomical annotation of Drosophila gene expression patterns. PMID:22689756
RNA in centrosomes: structure and possible functions. PMID:22684578
p180 promotes the ribosome-independent localization of a subset of mRNA to the endoplasmic reticulum. PMID:22679391
Conservation of the RNA Transport Machineries and Their Coupling to Translation Control across Eukaryotes. PMID:22666086
Mining Functional Elements in Messenger RNAs: Overview, Challenges, and Perspectives. PMID:22639614
Learning sparse representations for fruit-fly gene expression pattern image annotation and retrieval. PMID:22621237
Translational control in cellular and developmental processes. PMID:22568971
Axonal mRNA localization and local protein synthesis in nervous system assembly, maintenance and repair. PMID:22498899
A novel mRNA binding protein complex promotes localized plasminogen activator inhibitor-1 accumulation at the myoendothelial junction. PMID:22383705
Identification of nucleotide patterns enriched in secreted RNAs as putative cis-acting elements targeting them to exosome nano-vesicles. PMID:22369587
Widespread mRNA association with cytoskeletal motor proteins and identification and dynamics of myosin-associated mRNAs in S. cerevisiae. PMID:22359641
Genome-wide analysis of the maternal-to-zygotic transition in Drosophila primordial germ cells. PMID:22348290
Dorsal-ventral gene expression in the Drosophila embryo reflects the dynamics and precision of the dorsal nuclear gradient. PMID:22342544
Imaging protein synthesis in cells and tissues with an alkyne analog of puromycin. PMID:22160674
Principles of mRNA transport in yeast. PMID:22159587
Translational regulation of the cell cycle: when, where, how and why? PMID:22084390
FlyExpress: visual mining of spatiotemporal patterns for genes and publications in Drosophila embryogenesis. PMID:21994220
The Levinthal paradox of the interactome. PMID:21987416
Control of cytoplasmic mRNA localization. PMID:21984598
Comparison of embryonic expression within multigene families using the FlyExpress discovery platform reveals more spatial than temporal divergence. PMID:21960044
Functional analysis of the microtubule-interacting transcriptome. PMID:21937723
Mechanisms and consequences of alternative polyadenylation. PMID:21925375
A genetic in vivo system to detect asymmetrically distributed RNA. PMID:21921935
The road not taken: new destinations for yeast mRNAs on the move. PMID:21878997
3'UTR elements inhibit Ras-induced C/EBPβ post-translational activation and senescence in tumour cells. PMID:21804532
Cotranslational transport of ABP140 mRNA to the distal pole of S. cerevisiae. PMID:21792172
The compartmentalized vessel: The bacterial cell as a model for subcellular organization (a tale of two studies). PMID:21686257
A new postal code for dendritic mRNA transport in neurons. PMID:21681203
Anterior-posterior axis specification in Drosophila oocytes: identification of novel bicoid and oskar mRNA localization factors. PMID:21625003
Drosophila Gene Expression Pattern Annotation Using Sparse Features and Term-Term Interactions. PMID:21614142
Hierarchical regulation of mRNA partitioning between the cytoplasm and the endoplasmic reticulum of mammalian cells. PMID:21613539
mRNA localization: assembly of transport complexes and their incorporation into particles. PMID:21536427
Transcriptome asymmetry within mouse zygotes but not between early embryonic sister blastomeres. PMID:21468028
Systems analysis of endothelial cell plasma membrane proteome of rat lung microvasculature. PMID:21447187
Identifying and searching for conserved RNA localisation signals. PMID:21431757
Transport of germ plasm on astral microtubules directs germ cell development in Drosophila. PMID:21376599
Identification of dAven, a Drosophila melanogaster ortholog of the cell cycle regulator Aven. PMID:21368576
Automatically identifying and annotating mouse embryo gene expression patterns. PMID:21357576
Non-coding RNAs enter mitosis: functions, conservation and implications. PMID:21356070
Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq. PMID:21346796
Efficient detection of RNA-protein interactions using tethered RNAs. PMID:21300640
The centrosome and spindle as a ribonucleoprotein complex. PMID:21287260
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PMID:21267068
Optimization of reporter gene architecture for quantitative measurements of gene expression in the Drosophila embryo. PMID:21150286
Conservation defines functional motifs in the squint/nodal-related 1 RNA dorsal localization element. PMID:21149265
Mis-localization of Arp2 mRNA impairs persistence of directional cell migration. PMID:21146522
Evidence for a transport-trap mode of Drosophila melanogaster gurken mRNA localization. PMID:21103393
Subcellular profiling reveals distinct and developmentally regulated repertoire of growth cone mRNAs. PMID:21084603
Remaining mysteries of the cytoplasm. PMID:21079024
Subcellular communication through RNA transport and localized protein synthesis. PMID:21040295
The HUDSEN Atlas: a three-dimensional (3D) spatial framework for studying gene expression in the developing human brain. PMID:20979583
Polypurine-repeat-containing RNAs: a novel class of long non-coding RNA in mammalian cells. PMID:20940252
Aubergine is a component of a nanos mRNA localization complex. PMID:20937269
Three-dimensional tracking of single mRNA particles in Saccharomyces cerevisiae using a double-helix point spread function. PMID:20921361
A novel mRNA affinity purification technique for the identification of interacting proteins and transcripts in ribonucleoprotein complexes. PMID:20876833
Genome-wide analysis of mRNA decay patterns during early Drosophila development. PMID:20858238
The cytoplasmic fate of an mRNP is determined cotranscriptionally: exception or rule? PMID:20810644
Novel mechanisms in the regulation of G protein-coupled receptor trafficking to the plasma membrane. PMID:20739277
Rediscovery of the nucleolinus, a dynamic RNA-rich organelle associated with the nucleolus, spindle, and centrosomes. PMID:20643950
Metadata matters: access to image data in the real world. PMID:20513764
Individual fates of mesenchymal stem cells in vitro. PMID:20507570
CORSEN, a new software dedicated to microscope-based 3D distance measurements: mRNA-mitochondria distance, from single-cell to population analyses. PMID:20494971
Microtubule-dependent mRNA transport in fungi. PMID:20472693
Making the message clear: visualizing mRNA localization. PMID:20444605
Transmembrane receptor DCC associates with protein synthesis machinery and regulates translation. PMID:20434207
Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure. PMID:20418358
A modifier screen for Bazooka/PAR-3 interacting genes in the Drosophila embryo epithelium. PMID:20368978
Understanding neuronal connectivity through the post-transcriptional toolkit. PMID:20360381
Mitochondrial presequence and open reading frame mediate asymmetric localization of messenger RNA. PMID:20224577
Isolation and identification of cytoskeleton-associated prolamine mRNA binding proteins from developing rice seeds. PMID:20217123
Notch and delta mRNAs in early-stage and mid-stage drosophila embryos exhibit complementary patterns of protein-producing potentials. PMID:20201103
Organism-scale modeling of early Drosophila patterning via bone morphogenetic proteins. PMID:20159596
Regulation of Drosophila vasa in vivo through paralogous cullin-RING E3 ligase specificity receptors. PMID:20123973
ZBP1 recognition of beta-actin zipcode induces RNA looping. PMID:20080952
Subcellular targeting strategies for drug design and delivery. PMID:20043027
Determination of gene expression patterns using in situ hybridization to Drosophila testes. PMID:20010932
Subcellular mRNA localization in animal cells and why it matters. PMID:19965463
Vasa promotes Drosophila germline stem cell differentiation by activating mei-P26 translation by directly interacting with a (U)-rich motif in its 3' UTR. PMID:19952109
FlyTED: the Drosophila Testis Gene Expression Database. PMID:19934263
Tom20 mediates localization of mRNAs to mitochondria in a translation-dependent manner. PMID:19858288
Deciphering the genetic code of morphogenesis using functional genomics. PMID:19796373
Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function. PMID:19758432
The Relationship between Dendritic Branch Dynamics and CPEB-Labeled RNP Granules Captured in Vivo. PMID:19753328
Cells within a cell: Insights into cellular architecture and polarization from the organization of the early fly embryo. PMID:19721875
Dynamics of axonal mRNA transport and implications for peripheral nerve regeneration. PMID:19699200
Evolutionary modeling and prediction of non-coding RNAs in Drosophila. PMID:19668382
A role for polypyrimidine tract binding protein in the establishment of focal adhesions. PMID:19667078
HIV-1 matrix dependent membrane targeting is regulated by Gag mRNA trafficking. PMID:19662089
Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster. PMID:19633094
Follow the mRNA: a new model for Bicoid gradient formation. PMID:19626044
Impact of oxygen environment on mesenchymal stem cell expansion and chondrogenic differentiation. PMID:19594581
Lighting up mRNA localization in Drosophila oogenesis. PMID:19592573
Response of heterogeneous ribonuclear proteins (hnRNP) to ionising radiation and their involvement in DNA damage repair. PMID:19579069
Long noncoding RNAs: functional surprises from the RNA world. PMID:19571179
A FRET-based assay for characterization of alternative splicing events using peptide nucleic acid fluorescence in situ hybridization. PMID:19561195
Triangle network motifs predict complexes by complementing high-error interactomes with structural information. PMID:19558694
Regulation of mRNA translation in renal physiology and disease. PMID:19535566
The fungal RNA-binding protein Rrm4 mediates long-distance transport of ubi1 and rho3 mRNAs. PMID:19494833
Genetic modifiers of dFMR1 encode RNA granule components in Drosophila. PMID:19487564
Centrocortin cooperates with centrosomin to organize Drosophila embryonic cleavage furrows. PMID:19427213
A bag-of-words approach for Drosophila gene expression pattern annotation. PMID:19383139
PAT proteins, an ancient family of lipid droplet proteins that regulate cellular lipid stores. PMID:19375517
Determination of gene expression patterns using high-throughput RNA in situ hybridization to whole-mount Drosophila embryos. PMID:19360017
Su(z)2 antagonizes auto-repression of Myc in Drosophila, increasing Myc levels and subsequent trans-activation. PMID:19333393
Zebrafish whole mount high-resolution double fluorescent in situ hybridization. PMID:19322135
In vivo stable isotope labeling of fruit flies reveals post-transcriptional regulation in the maternal-to-zygotic transition. PMID:19321433
Delivering proteins for export from the cytosol. PMID:19305415
Characterization of Drosophila melanogaster cytochrome P450 genes. PMID:19289821
Dynamic Organization of Aminoacyl-tRNA Synthetase Complexes in the Cytoplasm of Human Cells. PMID:19289464
RNA localization and polarity: from A(PC) to Z(BP). PMID:19251418
mRNA localization: gene expression in the spatial dimension. PMID:19239891
RNA localization to the Balbiani body in Xenopus oocytes is regulated by the energy state of the cell and is facilitated by kinesin II. PMID:19223445
Nuclear transport factor directs localization of protein synthesis during mitosis. PMID:19198597
MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles. PMID:19188602
Drosophila PTB promotes formation of high-order RNP particles and represses oskar translation. PMID:19131435
Temporal and spatial control of germ-plasm RNAs. PMID:19110432
Imaging the glycome. PMID:19104067
The conserved protein SZY-20 opposes the Plk4-related kinase ZYG-1 to limit centrosome size. PMID:19081077
Molecule-level imaging of Pax6 mRNA distribution in mouse embryonic neocortex by molecular interaction force microscopy. PMID:19043075
Polarity and differential inheritance--universal attributes of life? PMID:19041746
Alternative requirements for Vestigial, Scalloped, and Dmef2 during muscle differentiation in Drosophila melanogaster. PMID:18987343
Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PMID:18959479
Suppressors of the cdc-25.1(gf)-associated intestinal hyperplasia reveal important maternal roles for prp-8 and a subset of splicing factors in C. elegans. PMID:18945809
Noncoding RNA in development. PMID:18839252
Computational prediction of RNA structural motifs involved in posttranscriptional regulatory processes. PMID:18815376
Drosophila maternal Hsp83 mRNA destabilization is directed by multiple SMAUG recognition elements in the open reading frame. PMID:18794360
A genomewide survey argues that every zygotic gene product is dispensable for the initiation of somatic homolog pairing in Drosophila. PMID:18791221
Noise-driven stem cell and progenitor population dynamics. PMID:18698344
Automated annotation of Drosophila gene expression patterns using a controlled vocabulary. PMID:18632750
Repression of RNA polymerase II transcription by a Drosophila oligopeptide. PMID:18575576
Multiplexed RNA trafficking in oligodendrocytes and neurons. PMID:18442491
straightjacket is required for the synaptic stabilization of cacophony, a voltage-gated calcium channel alpha1 subunit. PMID:18391075
Signal sequence- and translation-independent mRNA localization to the endoplasmic reticulum. PMID:18192611
Specific expression of long noncoding RNAs in the mouse brain. PMID:18184812
Reining in RNA. Workshop on intracellular RNA localization and localized translation. PMID:18084187 -
Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs
PubMed citations: 53.
53 articles citing: Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs
Integrated Analysis of mRNAs and Long Non-Coding RNAs Expression of Oviduct That Provides Novel Insights into the Prolificacy Mechanism of Goat (Capra hircus). PMID:35741792
Genome-Wide Identification of Long Noncoding RNA and Their Potential Interactors in ISWI Mutants. PMID:35682924
Intronic gRNAs for the Construction of Minimal Gene Drive Systems. PMID:35646834
Identification of embryonic RNA granules that act as sites of mRNA translation after changing their physical properties. PMID:35620421
Transcriptional coupling of distant regulatory genes in living embryos. PMID:35508662
The Triangle Relationship Between Long Noncoding RNA, RIG-I-like Receptor Signaling Pathway, and Glycolysis. PMID:34917069
The Fly Homologue of MFSD11 Is Possibly Linked to Nutrient Homeostasis and Has a Potential Role in Locomotion: A First Characterization of the Atypical Solute Carrier CG18549 in Drosophila Melanogaster. PMID:34821824
The Identification and Functional Analysis of mRNA Localizing to Centrosomes. PMID:34805187
Single-cell RNA-sequencing reveals pre-meiotic X-chromosome dosage compensation in Drosophila testis. PMID:34403408
Quantitative imaging of transcription in living Drosophila embryos reveals the impact of core promoter motifs on promoter state dynamics. PMID:34301936
The tweety Gene Family: From Embryo to Disease. PMID:34262434
mRNA Targeting, Transport and Local Translation in Eukaryotic Cells: From the Classical View to a Diversity of New Concepts. PMID:34092811
In vivo discovery of RNA proximal proteins via proximity-dependent biotinylation. PMID:34006179
Comprehensive biological function analysis of lncRNAs in hepatocellular carcinoma. PMID:33997162
An open-source semi-automated robotics pipeline for embryo immunohistochemistry. PMID:33986394
Methods and tools for spatial mapping of single-cell RNAseq clusters in Drosophila. PMID:33713129
The Roles of the LIM Domain Proteins in Drosophila Cardiac and Hematopoietic Morphogenesis. PMID:33681304
A choreography of centrosomal mRNAs reveals a conserved localization mechanism involving active polysome transport. PMID:33649340
Characterization of the nuclear and cytosolic transcriptomes in human brain tissue reveals new insights into the subcellular distribution of RNA transcripts. PMID:33603054
Density Distribution Maps: A Novel Tool for Subcellular Distribution Analysis and Quantitative Biomedical Imaging. PMID:33540807
Subcellular mRNA Localization Regulates Ribosome Biogenesis in Migrating Cells. PMID:33171110
Organizing the oocyte: RNA localization meets phase separation. PMID:32591084
Subcellular Spatial Transcriptomes: Emerging Frontier for Understanding Gene Regulation. PMID:32482897
Proximity-CLIP and Expedited Non-Radioactive Library Preparation of Small RNA Footprints for Next-Generation Sequencing. PMID:32438484
A single-cell transcriptomic atlas of the adult Drosophila ventral nerve cord. PMID:32314735
New sequencing methodologies reveal interplay between multiple RNA-binding proteins and their RNAs. PMID:32193580
Temporal specificity and heterogeneity of Drosophila immune cells. PMID:32162708
Diabetic Retinopathy, lncRNAs, and Inflammation: A Dynamic, Interconnected Network. PMID:31337130
Maternal Nanos inhibits Importin-α2/Pendulin-dependent nuclear import to prevent somatic gene expression in the Drosophila germline. PMID:31091233
A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs. PMID:30923056
Drosophila mRNA Localization During Later Development: Past, Present, and Future. PMID:30899273
Imaging Flies by Fluorescence Microscopy: Principles, Technologies, and Applications. PMID:30626639
Dynamic multifactor hubs interact transiently with sites of active transcription in Drosophila embryos. PMID:30589412
Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments. PMID:30478324
Non-coding RNA Expression, Function, and Variation during Drosophila Embryogenesis. PMID:30393032
A computational framework to study sub-cellular RNA localization. PMID:30389932
Sequence Determinants for Nuclear Retention and Cytoplasmic Export of mRNAs and lncRNAs. PMID:30386371
Current status and strategies of long noncoding RNA research for diabetic cardiomyopathy. PMID:30342478
lncSLdb: a resource for long non-coding RNA subcellular localization. PMID:30219837
Localization and translation control of slam in Drosophila cellularization. PMID:30211628
Long Non-coding RNA Structure and Function: Is There a Link? PMID:30197605
Dpp regulates autophagy-dependent midgut removal and signals to block ecdysone production. PMID:29959404
Patterns of chromatin accessibility along the anterior-posterior axis in the early Drosophila embryo. PMID:29727464
High-Sensitivity and High-Resolution In Situ Hybridization of Coding and Long Non-coding RNAs in Vertebrate Ovaries and Testes. PMID:29507535
Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking. PMID:29239719
High Resolution Fluorescent In Situ Hybridization in Drosophila Embryos and Tissues Using Tyramide Signal Amplification. PMID:29155736
CeFra-seq reveals broad asymmetric mRNA and noncoding RNA distribution profiles in Drosophila and human cells. PMID:29079635
mRNA localization in metazoans: A structural perspective. PMID:28640665
APC/CFzr/Cdh1-Dependent Regulation of Planar Cell Polarity Establishment via Nek2 Kinase Acting on Dishevelled. PMID:28041906
Long noncoding RNA (lincRNA), a new paradigm in gene expression control. PMID:27681237
Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis. PMID:27678375
Visualization of single endogenous polysomes reveals the dynamics of translation in live human cells. PMID:27597760
Long noncoding RNAs and Alzheimer's disease. PMID:27418812
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biological imaging
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cellular localization
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fluorescence
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gene expression data
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version: None
in situ hybridization
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version: None
messenger rna
metasource: Fairsharing.org
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drosophila
metasource: re3data.org
version: re3data.org: Fly-FISH; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8F last accessed: 2022-11-04
embryo
metasource: re3data.org
version: re3data.org: Fly-FISH; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8F last accessed: 2022-11-04
gene
metasource: re3data.org
version: re3data.org: Fly-FISH; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8F last accessed: 2022-11-04
larvae
metasource: re3data.org
version: re3data.org: Fly-FISH; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8F last accessed: 2022-11-04
mrna
metasource: re3data.org
version: re3data.org: Fly-FISH; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8F last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
biological imaging
metasource: Fairsharing.orgversion: None
cellular localization
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fluorescence
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gene expression data
metasource: Fairsharing.orgversion: None
in situ hybridization
metasource: Fairsharing.orgversion: None
messenger rna
metasource: Fairsharing.orgversion: None
drosophila
metasource: re3data.orgversion: re3data.org: Fly-FISH; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8F last accessed: 2022-11-04
embryo
metasource: re3data.orgversion: re3data.org: Fly-FISH; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8F last accessed: 2022-11-04
gene
metasource: re3data.orgversion: re3data.org: Fly-FISH; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8F last accessed: 2022-11-04
larvae
metasource: re3data.orgversion: re3data.org: Fly-FISH; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8F last accessed: 2022-11-04
mrna
metasource: re3data.orgversion: re3data.org: Fly-FISH; editing status 2022-07-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJN8F last accessed: 2022-11-04
biological imaging cellular localization fluorescence gene expression in situ hybridization messenger rna drosophila embryo gene larvae mrna
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