Feature Annotation Location Description Ontology
Names
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Feature Annotation Location Description Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: Created at the Biohackathon 2012 and 2013 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FALDO
FALDO
metasource: Fairsharing.org
version: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: Created at the Biohackathon 2012 and 2013 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FALDO
Names
More detailed information about this field from each metasource.
Feature Annotation Location Description Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: Created at the Biohackathon 2012 and 2013 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FALDO
FALDO
metasource: Fairsharing.orgversion: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: Created at the Biohackathon 2012 and 2013 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FALDO
Names
More detailed information about this field from each metasource.
Feature Annotation Location Description Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: Created at the Biohackathon 2012 and 2013 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FALDO
FALDO
metasource: Fairsharing.orgversion: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: Created at the Biohackathon 2012 and 2013 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FALDO
The Feature Annotation Location Description Ontology (FALDO), to describe the positions of annotated features on linear and circular sequences for data resources represented in RDF and/or OWL. FALDO can be used to describe nucleotide features in sequence records, protein annotations, and glycan binding sites, among other features in coordinate systems of the aforementioned “omics” areas. Using the same data format to represent sequence positions that are independent of file formats allows us to integrate sequence data from multiple sources and data types.
Description
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The Feature Annotation Location Description Ontology (FALDO), to describe the positions of annotated features on linear and circular sequences for data resources represented in RDF and/or OWL. FALDO can be used to describe nucleotide features in sequence records, protein annotations, and glycan binding sites, among other features in coordinate systems of the aforementioned “omics” areas. Using the same data format to represent sequence positions that are independent of file formats allows us to integrate sequence data from multiple sources and data types.
metasource: Fairsharing.orgversion: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
FALDO is the Feature Annotation Location Description Ontology. It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources. The aim of this ontology is to describe the position of a sequence region or a feature. It does not aim to describe features or regions itself, but instead depends on resources such as the Sequence Ontology or the UniProt core ontolgy.
metasource: Biontology / Bioportalversion: Created at the Biohackathon 2012 and 2013 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FALDO
Webpage:
http://biohackathon.org/resource/faldoWebpage
More detailed information about this field from each metasource.
http://biohackathon.org/resource/faldo
metasource: Fairsharing.orgversion: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: Created at the Biohackathon 2012 and 2013 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FALDO
Licence:
Name: Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain DedicationLicence name
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Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
metasource: Fairsharing.orgversion: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Licence URL
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https://creativecommons.org/publicdomain/zero/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
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FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation
PMID: 27296299
metasource: Fairsharing.org
version: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0067-z
metasource: Biontology / Bioportal
version: Created at the Biohackathon 2012 and 2013 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FALDO
Publications
More detailed information about this field from each metasource.
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation
PMID: 27296299
metasource: Fairsharing.org
version: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0067-z
metasource: Biontology / Bioportalversion: Created at the Biohackathon 2012 and 2013 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FALDO
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FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation
PubMed citations: 14.
14 articles citing: FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation
HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes. PMID:32034905
The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation. PMID:31685817
TogoGenome/TogoStanza: modularized Semantic Web genome database. PMID:30624651
NBDC RDF portal: a comprehensive repository for semantic data in life sciences. PMID:30576482
Spfy: an integrated graph database for real-time prediction of bacterial phenotypes and downstream comparative analyses. PMID:30212910
YummyData: providing high-quality open life science data. PMID:29688370
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles. PMID:29186322
WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. PMID:28365742
DNA Data Bank of Japan. PMID:27924010
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. PMID:27899636
Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures. PMID:27789697
GFVO: the Genomic Feature and Variation Ontology. PMID:26019997
Preserving sequence annotations across reference sequences. PMID:25093075
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. PMID:24495517 - https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0067-z
Tags:
Tags
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binding site
metasource: Fairsharing.org
version: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
gene feature
metasource: Fairsharing.org
version: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
nucleic acid sequence
metasource: Fairsharing.org
version: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
sequence annotation
metasource: Fairsharing.org
version: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
sequence feature
metasource: Fairsharing.org
version: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
binding site
metasource: Fairsharing.orgversion: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
gene feature
metasource: Fairsharing.orgversion: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
nucleic acid sequence
metasource: Fairsharing.orgversion: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
sequence annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
sequence feature
metasource: Fairsharing.orgversion: FAIRsharing.org: FALDO; Feature Annotation Location Description Ontology; DOI: https://doi.org/10.25504/FAIRsharing.haxp7g; Last edited: Feb. 4, 2020, 2:13 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
binding site gene feature nucleic acid sequence sequence annotation sequence feature
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