Other names: famplex
It is an effective resource for improving named entity recognition, grounding, and relationship resolution in automated reading of biomedical text.
data mining protein families natural language processing
Bioentities is a collection of resources for grounding biological entities from text and describing their hierarchical relationships, focusing on protein families and complexes.
Named Entity Recognition Ontology (NERO) developed specifically for describing textual entities in biomedical texts, which accounts for diverse levels of ambiguity, bridging the scientific sublanguage ...
ORGANISMS is a weekly updated web resource that facilitates taxonomy-aware search and retrieval of articles. To this end, the the resource performs named entity recognition of terms from the NCBI Taxo ...
The Colorado Richly Annotated Full Text Corpus (CRAFT) is a manually annotated corpus consisting of 67 full-text biomedical journal articles from the PubMed Central Open Access Subset.
iProLINK (integrated Protein Literature, INformation and Knowledge) is a resource to facilitate text mining research in the area of literature-based database curation, named entity recognition, and pr ...
Literature-mined resource for drivers, oncogenes and tumor suppressors in cancer.
EpiGraphDB is an analytical platform and database to support data mining in epidemiology. The platform incorporates a graph of causal estimates generated by systematically applying Mendelian randomiza ...
Language terms used in the domain of autism. The language terms were obtained via text mining and automatic retrieval of terms from the corpus of PubMed abstracts.
Knowledge database for the automated curation and multidimensional analysis of molecular signatures in gastrointestinal (GI) cancer.
The Protein Information Resource (PIR) is an integrated public bioinformatics resource that supports genomic and proteomic research and scientific studies. PIR has provided many protein databases and ...
An Open Access Knowledge Base for Microbial Natural Products Discovery. The Natural Products Atlas Network views of chemical space. The Natural Products Atlas provides a unique tools for exploring n ...
Restructured version of Gene Expression Omnibus (GEO) that provides a user friendly interface for curating GEO database
emiRIT is a text-mining based database for microRNA information.
BioThesaurus is a web-based system that maps a comprehensive collection of protein and gene names to protein entries in the UniProt Knowledgebase (UniProtKB). Currently covering more than two million ...
Web-Based Database and Predictor of Anti-Inflammatory Natural Products.
DISEASES is a weekly updated web resource that integrates evidence on disease-gene associations from automatic text mining, manually curated literature, cancer mutation data, and genome-wide associati ...
An End-to-End Deep Learning-Based Workflow for Biomedical Knowledge Graph Extraction, Optimization and Applications.
Model Zoo curates and provides a platform for deep learning researchers to easily find pre-trained models for a variety of platforms and uses.
Predicted secreted bacterial proteins
COMPARTMENTS is a weekly updated web resource that integrates evidence on protein subcellular localization from manually curated literature, high-throughput screens, automatic text mining, and sequenc ...