CancerMine

Literature-mined resource for drivers, oncogenes and tumor suppressors in cancer.

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CancerMine: a literature-mined resource for drivers, oncogenes and tumor suppressors in cancer
PMID: 31110280

metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:37.823619

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• CancerMine: a literature-mined resource for drivers, oncogenes and tumor suppressors in cancer PubMed citations: 40.

  40 articles citing: CancerMine: a literature-mined resource for drivers, oncogenes and tumor suppressors in cancer

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  An annotated dataset for extracting gene-melanoma relations from scientific literature. PMID:35045882

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  Identification of human gene research articles with wrongly identified nucleotide sequences. PMID:35022248

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  The importance of enhancer methylation for epigenetic regulation of tumorigenesis in squamous lung cancer. PMID:34987166

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  A computational approach for the discovery of significant cancer genes by weighted mutation and asymmetric spreading strength in networks. PMID:34876593

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  ChiTaH: a fast and accurate tool for identifying known human chimeric sequences from high-throughput sequencing data. PMID:34859212

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  ImmReg: the regulon atlas of immune-related pathways across cancer types. PMID:34755873

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  Mir-21 Suppression Promotes Mouse Hepatocarcinogenesis. PMID:34638467

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  Network propagation-based prioritization of long tail genes in 17 cancer types. PMID:34620211

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  Integrative Transcriptome-Wide Analyses Uncover Novel Risk-Associated MicroRNAs in Hormone-Dependent Cancers. PMID:34512726

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  The Emerging Role of Stress Granules in Hepatocellular Carcinoma. PMID:34502337

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  Computational analysis of sense-antisense chimeric transcripts reveals their potential regulatory features and the landscape of expression in human cells. PMID:34458728

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  Inference of kinase-signaling networks in human myeloid cell line models by Phosphoproteomics using kinase activity enrichment analysis (KAEA). PMID:34238254

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  DNA Methylation Markers from Negative Surgical Margins Can Predict Recurrence of Oral Squamous Cell Carcinoma. PMID:34207933

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  Integrative Ranking of Enhancer Networks Facilitates the Discovery of Epigenetic Markers in Cancer. PMID:34135941

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  Genome-wide characterization of human minisatellite VNTRs: population-specific alleles and gene expression differences. PMID:33849068

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  The landscape of copy number variations in classical Hodgkin lymphoma: a joint KU Leuven and LYSA study on cell-free DNA. PMID:33843986

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  Ranking cancer drivers via betweenness-based outlier detection and random walks. PMID:33568049

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  Systematic analysis of enhancer regulatory circuit perturbation driven by copy number variations in malignant glioma. PMID:33537074

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  RNA splicing and aggregate gene expression differences in lung squamous cell carcinoma between patients of West African and European ancestry. PMID:33465699

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  A genome-wide strategy to identify causes and consequences of retrotransposon expression finds activation by BRCA1 in ovarian cancer. PMID:33447827

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  Ambiguity in medical concept normalization: An analysis of types and coverage in electronic health record datasets. PMID:33319905

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  DriveWays: a method for identifying possibly overlapping driver pathways in cancer. PMID:33319839

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  Stabilization of ERK-Phosphorylated METTL3 by USP5 Increases m6A Methylation. PMID:33217317

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  e-MutPath: computational modeling reveals the functional landscape of genetic mutations rewiring interactome networks. PMID:33211847

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  DORGE: Discovery of Oncogenes and tumoR suppressor genes using Genetic and Epigenetic features. PMID:33177077

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  CNCDatabase: a database of non-coding cancer drivers. PMID:33095860

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  The New Paradigm of Network Medicine to Analyze Breast Cancer Phenotypes. PMID:32932728

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  Cancer Informatics in 2019: Deep Learning Takes Center Stage. PMID:32823323

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  Extending TextAE for annotation of non-contiguous entities. PMID:32634869

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  Secreted breast tumor interstitial fluid microRNAs and their target genes are associated with triple-negative breast cancer, tumor grade, and immune infiltration. PMID:32605588

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  Ten tips for a text-mining-ready article: How to improve automated discoverability and interpretability. PMID:32479517

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  Exomes of Ductal Luminal Breast Cancer Patients from Southwest Colombia: Gene Mutational Profile and Related Expression Alterations. PMID:32365829

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  Text-mining in cancer research may help identify effective treatments. PMID:32038938

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  Statistical analysis of spatial expression patterns for spatially resolved transcriptomic studies. PMID:31988518

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  Diversity spectrum analysis identifies mutation-specific effects of cancer driver genes. PMID:31925297

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  PGxMine: Text mining for curation of PharmGKB. PMID:31797632

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  Text-mining clinically relevant cancer biomarkers for curation into the CIViC database. PMID:31796060

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  Expression profile analysis of two antisense lncRNAs to improve prognosis prediction of colorectal adenocarcinoma. PMID:31708689

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  Transcription Factor and miRNA Interplays Can Manifest the Survival of ccRCC Patients. PMID:31661791

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  Paralog dependency indirectly affects the robustness of human cells. PMID:31556487

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More detailed information about this field from each metasource. ×

oncology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:37.823619

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natural language processing

metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:37.823619

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machine learning

metasource: bio.tools
version: extracted_at: 2022-11-04T11:30:37.823619

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oncology natural language processing