ExplorEnz
The Enzyme Database was developed as a new way to access the data of the IUBMB Enzyme Nomenclature List. The data, which are stored in a MySQL database, preserve the formatting of chemical names according to IUPAC standards.
Description
More detailed information about this field from each metasource.
The Enzyme Database was developed as a new way to access the data of the IUBMB Enzyme Nomenclature List. The data, which are stored in a MySQL database, preserve the formatting of chemical names according to IUPAC standards.
metasource: Fairsharing.orgversion: FAIRsharing.org: ExplorEnz; ExplorEnz; DOI: https://doi.org/10.25504/FAIRsharing.da6cny; Last edited: April 26, 2021, 3:22 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Reference database of the IUBMB Enzyme Nomenclature
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://www.enzyme-database.orgWebpage
More detailed information about this field from each metasource.
http://www.enzyme-database.org
metasource: Fairsharing.orgversion: FAIRsharing.org: ExplorEnz; ExplorEnz; DOI: https://doi.org/10.25504/FAIRsharing.da6cny; Last edited: April 26, 2021, 3:22 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
http://www.enzyme-database.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: ExplorEnz Attribution requiredLicence name
More detailed information about this field from each metasource.
ExplorEnz Attribution required
metasource: Fairsharing.orgversion: FAIRsharing.org: ExplorEnz; ExplorEnz; DOI: https://doi.org/10.25504/FAIRsharing.da6cny; Last edited: April 26, 2021, 3:22 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence URL
More detailed information about this field from each metasource.
https://www.enzyme-database.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: ExplorEnz; ExplorEnz; DOI: https://doi.org/10.25504/FAIRsharing.da6cny; Last edited: April 26, 2021, 3:22 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
ExplorEnz: the primary source of the IUBMB enzyme list
PMID: 18776214
metasource: Fairsharing.org
version: FAIRsharing.org: ExplorEnz; ExplorEnz; DOI: https://doi.org/10.25504/FAIRsharing.da6cny; Last edited: April 26, 2021, 3:22 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
ExplorEnz: the primary source of the IUBMB enzyme list
PMID: 18776214
metasource: Fairsharing.org
version: FAIRsharing.org: ExplorEnz; ExplorEnz; DOI: https://doi.org/10.25504/FAIRsharing.da6cny; Last edited: April 26, 2021, 3:22 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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ExplorEnz: the primary source of the IUBMB enzyme list
PubMed citations: 66.
66 articles citing: ExplorEnz: the primary source of the IUBMB enzyme list
Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures. PMID:35484861
Parameter Reliability and Understanding Enzyme Function. PMID:35011495
Current Perspectives on Chitinolytic Enzymes and Their Agro-Industrial Applications. PMID:34943233
Sarcoplasmic Reticulum from Horse Gluteal Muscle Is Poised for Enhanced Calcium Transport. PMID:34941816
Subgingival Microbiota and Cytokines Profile Changes in Patients with Periodontitis: A Pilot Study Comparing Healthy and Diseased Sites in the Same Oral Cavities. PMID:34835489
Rhea, the reaction knowledgebase in 2022. PMID:34755880
The Role of Gene Duplication in the Divergence of Enzyme Function: A Comparative Approach. PMID:34335678
Toward a Coronavirus Knowledge Graph. PMID:34209818
Hierarchical Harmonization of Atom-Resolved Metabolic Reactions across Metabolic Databases. PMID:34209357
Prediction of Selected Biosynthetic Pathways for the Lipopolysaccharide Components in Porphyromonas gingivalis. PMID:33804654
BioMaster: An Integrated Database and Analytic Platform to Provide Comprehensive Information About BioBrick Parts. PMID:33552037
Infection trains the host for microbiota-enhanced resistance to pathogens. PMID:33453153
BRENDA, the ELIXIR core data resource in 2021: new developments and updates. PMID:33211880
Sarcolipin Exhibits Abundant RNA Transcription and Minimal Protein Expression in Horse Gluteal Muscle. PMID:33202832
A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR). PMID:33178355
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes. PMID:32986834
Atom Identifiers Generated by a Neighborhood-Specific Graph Coloring Method Enable Compound Harmonization across Metabolic Databases. PMID:32933023
Bacterial Oxidases of the Cytochrome bd Family: Redox Enzymes of Unique Structure, Function, and Utility As Drug Targets. PMID:32924537
HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes. PMID:32034905
Genome-Scale Metabolic Reconstruction of Acetobacter pasteurianus 386B, a Candidate Functional Starter Culture for Cocoa Bean Fermentation. PMID:31921009
BIOPEP-UWM Database of Bioactive Peptides: Current Opportunities. PMID:31783634
Enzyme annotation in UniProtKB using Rhea. PMID:31688925
Antarctic tundra soil metagenome as useful natural resources of cold-active lignocelluolytic enzymes. PMID:31571125
Targeting Protein Kinases to Enhance the Response to anti-PD-1/PD-L1 Immunotherapy. PMID:31075880
Marek's Disease Virus Regulates the Ubiquitylome of Chicken CD4+ T Cells to Promote Tumorigenesis. PMID:31035338
New Zealand Tree and Giant Wētā (Orthoptera) Transcriptomics Reveal Divergent Selection Patterns in Metabolic Loci. PMID:30957857
Targeting Receptor Kinases in Colorectal Cancer. PMID:30934752
Updates in Rhea: SPARQLing biochemical reaction data. PMID:30272209
An aryl-homoserine lactone quorum-sensing signal produced by a dimorphic prosthecate bacterium. PMID:29967162
Potential Activities of Freshwater Exo- and Endo-Acting Extracellular Peptidases in East Tennessee and the Pocono Mountains. PMID:29559961
STRENDA DB: enabling the validation and sharing of enzyme kinetics data. PMID:29498804
Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites. PMID:29106569
Neuronal cell-type classification: challenges, opportunities and the path forward. PMID:28775344
BrEPS 2.0: Optimization of sequence pattern prediction for enzyme annotation. PMID:28750104
biochem4j: Integrated and extensible biochemical knowledge through graph databases. PMID:28708831
Internet Databases of the Properties, Enzymatic Reactions, and Metabolism of Small Molecules-Search Options and Applications in Food Science. PMID:27929431
Metabolic pathway reconstruction strategies for central metabolism and natural product biosynthesis. PMID:27924274
BRENDA in 2017: new perspectives and new tools in BRENDA. PMID:27924025
Evaluating Functional Annotations of Enzymes Using the Gene Ontology. PMID:27812939
Updates in Rhea - an expert curated resource of biochemical reactions. PMID:27789701
Effects of Oxygen Limitation on the Biosynthesis of Photo Pigments in the Red Microalgae Galdieria sulphuraria Strain 074G. PMID:26859750
Characterising Complex Enzyme Reaction Data. PMID:26840640
Integration of systems glycobiology with bioinformatics toolboxes, glycoinformatics resources, and glycoproteomics data. PMID:25871730
BRENDA in 2015: exciting developments in its 25th year of existence. PMID:25378310
EzCatDB: the enzyme reaction database, 2015 update. PMID:25324316
TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. PMID:25300491
Profiling the orphan enzymes. PMID:24906382
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. PMID:24495517
The Structure-Function Linkage Database. PMID:24271399
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases. PMID:24225315
Data, information, knowledge and principle: back to metabolism in KEGG. PMID:24214961
Modular architecture of metabolic pathways revealed by conserved sequences of reactions. PMID:23384306
BRENDA in 2013: integrated reactions, kinetic data, enzyme function data, improved disease classification: new options and contents in BRENDA. PMID:23203881
By their genes ye shall know them: genomic signatures of predatory bacteria. PMID:23190728
CharProtDB: a database of experimentally characterized protein annotations. PMID:22140108
Rhea--a manually curated resource of biochemical reactions. PMID:22135291
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases. PMID:22102576
KEGG for integration and interpretation of large-scale molecular data sets. PMID:22080510
MACiE: exploring the diversity of biochemical reactions. PMID:22058127
A survey of metabolic databases emphasizing the MetaCyc family. PMID:21523460
GlycoForm and Glycologue: two software applications for the rapid construction and display of N-glycans from mammalian sources. PMID:20565879
PathPred: an enzyme-catalyzed metabolic pathway prediction server. PMID:20435670
The Protein Naming Utility: a rules database for protein nomenclature. PMID:20007151
Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API. PMID:19907644
On the origin of life in the zinc world. 2. Validation of the hypothesis on the photosynthesizing zinc sulfide edifices as cradles of life on Earth. PMID:19703275
Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009. PMID:19033364
Tags:
Tags
More detailed information about this field from each metasource.
classification
metasource: Fairsharing.org
version: FAIRsharing.org: ExplorEnz; ExplorEnz; DOI: https://doi.org/10.25504/FAIRsharing.da6cny; Last edited: April 26, 2021, 3:22 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
enzyme
metasource: Fairsharing.org
version: FAIRsharing.org: ExplorEnz; ExplorEnz; DOI: https://doi.org/10.25504/FAIRsharing.da6cny; Last edited: April 26, 2021, 3:22 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
enzymes and enzyme nomenclature
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
classification
metasource: Fairsharing.orgversion: FAIRsharing.org: ExplorEnz; ExplorEnz; DOI: https://doi.org/10.25504/FAIRsharing.da6cny; Last edited: April 26, 2021, 3:22 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
enzyme
metasource: Fairsharing.orgversion: FAIRsharing.org: ExplorEnz; ExplorEnz; DOI: https://doi.org/10.25504/FAIRsharing.da6cny; Last edited: April 26, 2021, 3:22 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
enzymes and enzyme nomenclature
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
classification enzyme metabolic and signaling pathways enzymes and enzyme nomenclature
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