The ENCODE peak information Format is used to provide called regions of signal enrichment based on pooled, normalized (interpreted) data.
dna genome regulatory region
A .2bit file stores multiple DNA sequences (up to 4 Gb total) in a compact randomly-accessible format. The file contains masking information as well as the DNA itself. The DNA sequence is represented ...
Encyclopedia of DNA Elements (ENCODE) has created a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory eleme ...
This format is for displaying SNPs from personal genomes. It is the same as is used for the Genome Variants and Population Variants tracks.
The .nib format pre-dates the .2bit format and is less compact. It describes a DNA sequence by packing two bases into each byte.
Gene Prediction File Format (genePred) is a table format commonly used for gene prediction tracks in the Genome Browser. Variations of genePred include standard format, extended format and a format wh ...
The Multiple Alignment Format stores DNA level multiple alignments in an easily readable format between entire genomes. Unlike previous formats this resource can cope with forward and reverse strand d ...
The ENCODE (Encyclopedia of DNA Elements) Consortium is an international collaboration of research groups funded by the National Human Genome Research Institute (NHGRI). The goal of ENCODE is to build ...
The net file format is used to describe the axtNet data that underlie the net alignment annotations in the Genome Browser.
BED (Browser Extensible Data) format provides a flexible way to define the data lines that are displayed in an genome annotation track. BED lines have three required fields and nine additional optiona ...
The wiggle (WIG) format is an older format for display of dense, continuous data such as GC percent, probability scores, and transcriptome data. The bigWig format is the recommended format for almost ...
Genome assemblies and aligned annotations for a wide range of vertebrates and model organisms, along with an integrated tool set for visualizing, comparing, analyzing and sharing both publicly availab ...
The chain format describes a pairwise alignment that allow gaps in both sequences simultaneously. Each set of chain alignments starts with a header line, contains one or more alignment data lines, and ...
BLAT is a multiple algorithms developed for the analysis and comparison of biological sequences such as DNA, RNA and proteins.
MESBL GC-MS metabolite peak database is a standardized library of more than 900 metabolite peaks from MS-reconstructed gas chromatograms integrating the in-house standard compound and peak library of ...
The bedGraph format allows display of continuous-valued data in track format. This display type is useful for probability scores and transcriptome data. This track type is similar to the wiggle (WIG) ...
At TAIR, we display Gene Ontology and Plant Ontology annotations made by TAIR curators and those made by the community including individual researchers and contributors to the GO Consortium. The GO an ...
Annotation data is submitted to the GO Consortium in the form of gene association files, or GAFs. This standard lays out the format specification for GAF 1.0
The bigWig format is for display of dense, continuous data that will be displayed in the Genome Browser as a graph. The bigWig files are in an indexed binary format. The main advantage of this format ...
Annotation is the process of assigning GO terms to gene products. The annotation data in the GO database is contributed by members of the GO Consortium, and the Consortium actively encourages new grou ...
ENA Sequence Flat File Format is a standardised plain text format for nucleotide sequences. This format was previously called the EMBL Sequence Flat File Format.