Database of local DNA conformers
Names
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Database of local DNA conformers
metasource: Fairsharing.org
version: FAIRsharing.org: Dolce; Database of local DNA conformers; DOI: https://doi.org/10.25504/FAIRsharing.jhjnp0; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Dolce
metasource: Fairsharing.org
version: FAIRsharing.org: Dolce; Database of local DNA conformers; DOI: https://doi.org/10.25504/FAIRsharing.jhjnp0; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Names
More detailed information about this field from each metasource.
Database of local DNA conformers
metasource: Fairsharing.orgversion: FAIRsharing.org: Dolce; Database of local DNA conformers; DOI: https://doi.org/10.25504/FAIRsharing.jhjnp0; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Dolce
metasource: Fairsharing.orgversion: FAIRsharing.org: Dolce; Database of local DNA conformers; DOI: https://doi.org/10.25504/FAIRsharing.jhjnp0; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Names
More detailed information about this field from each metasource.
Database of local DNA conformers
metasource: Fairsharing.orgversion: FAIRsharing.org: Dolce; Database of local DNA conformers; DOI: https://doi.org/10.25504/FAIRsharing.jhjnp0; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Dolce
metasource: Fairsharing.orgversion: FAIRsharing.org: Dolce; Database of local DNA conformers; DOI: https://doi.org/10.25504/FAIRsharing.jhjnp0; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Dolce is a database of DNA structure motifs based on an automatic classification method consisting of the combination of supervised and unsupervised approaches. This workflow has been applied to analyze 816 X-ray and 664 NMR DNA structures released till February 2013. Dinucleotides with unassigned conformations are either classified into one of already known 24 classes or into one of six new classes among so far unclassifiable data, which were newly identified and annotated among X-ray structures by authors of this tool.
Description
More detailed information about this field from each metasource.
Dolce is a database of DNA structure motifs based on an automatic classification method consisting of the combination of supervised and unsupervised approaches. This workflow has been applied to analyze 816 X-ray and 664 NMR DNA structures released till February 2013. Dinucleotides with unassigned conformations are either classified into one of already known 24 classes or into one of six new classes among so far unclassifiable data, which were newly identified and annotated among X-ray structures by authors of this tool.
metasource: Fairsharing.orgversion: FAIRsharing.org: Dolce; Database of local DNA conformers; DOI: https://doi.org/10.25504/FAIRsharing.jhjnp0; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Webpage:
http://ich.vscht.cz/projects/dolce/viewHomeWebpage
More detailed information about this field from each metasource.
http://ich.vscht.cz/projects/dolce/viewHome
metasource: Fairsharing.orgversion: FAIRsharing.org: Dolce; Database of local DNA conformers; DOI: https://doi.org/10.25504/FAIRsharing.jhjnp0; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Automatic workflow for the classification of local DNA conformations
PMID: 23800225
metasource: Fairsharing.org
version: FAIRsharing.org: Dolce; Database of local DNA conformers; DOI: https://doi.org/10.25504/FAIRsharing.jhjnp0; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
Automatic workflow for the classification of local DNA conformations
PMID: 23800225
metasource: Fairsharing.org
version: FAIRsharing.org: Dolce; Database of local DNA conformers; DOI: https://doi.org/10.25504/FAIRsharing.jhjnp0; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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Automatic workflow for the classification of local DNA conformations
PubMed citations: 10.
10 articles citing: Automatic workflow for the classification of local DNA conformations
Accurate prediction of B-form/A-form DNA conformation propensity from primary sequence: A machine learning and free energy handshake. PMID:34553171
Ion Binding Properties and Dynamics of the bcl-2 G-Quadruplex Using a Polarizable Force Field. PMID:33264004
Biologically important conformational features of DNA as interpreted by quantum mechanics and molecular mechanics computations of its simple fragments. PMID:29392428
A DNA structural alphabet provides new insight into DNA flexibility. PMID:29372899
A DNA Structural Alphabet Distinguishes Structural Features of DNA Bound to Regulatory Proteins and in the Nucleosome Core Particle. PMID:29057824
Polarizable Force Field for DNA Based on the Classical Drude Oscillator: I. Refinement Using Quantum Mechanical Base Stacking and Conformational Energetics. PMID:28399366
Assessing the Current State of Amber Force Field Modifications for DNA. PMID:27300587
DNATCO: assignment of DNA conformers at dnatco.org. PMID:27150812
Protein flexibility in the light of structural alphabets. PMID:26075209
Bioinformatic analysis of the protein/DNA interface. PMID:24335080
Tags:
Tags
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deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: Dolce; Database of local DNA conformers; DOI: https://doi.org/10.25504/FAIRsharing.jhjnp0; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: Dolce; Database of local DNA conformers; DOI: https://doi.org/10.25504/FAIRsharing.jhjnp0; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Tags
More detailed information about this field from each metasource.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: Dolce; Database of local DNA conformers; DOI: https://doi.org/10.25504/FAIRsharing.jhjnp0; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: Dolce; Database of local DNA conformers; DOI: https://doi.org/10.25504/FAIRsharing.jhjnp0; Last edited: Jan. 8, 2019, 1:23 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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