Coherent X-ray Imaging Data Bank
Names
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Coherent X-ray Imaging Data Bank
metasource: Fairsharing.org
version: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Coherent X-ray Imaging Data Bank; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3962D last accessed: 2022-11-04
CXIDB
metasource: Fairsharing.org
version: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Coherent X-ray Imaging Data Bank; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3962D last accessed: 2022-11-04
Names
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Coherent X-ray Imaging Data Bank
metasource: Fairsharing.orgversion: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Coherent X-ray Imaging Data Bank; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3962D last accessed: 2022-11-04
CXIDB
metasource: Fairsharing.orgversion: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Coherent X-ray Imaging Data Bank; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3962D last accessed: 2022-11-04
Names
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Coherent X-ray Imaging Data Bank
metasource: Fairsharing.orgversion: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Coherent X-ray Imaging Data Bank; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3962D last accessed: 2022-11-04
CXIDB
metasource: Fairsharing.orgversion: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Coherent X-ray Imaging Data Bank; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3962D last accessed: 2022-11-04
The Coherent X-ray Imaging Data Bank (CXIDB) offers scientists from all over the world a unique opportunity to access data from Coherent X-ray Imaging (CXI) experiments. It arose from the need to share the terabytes of data generated from X-ray free-electron laser experiments although it caters to all light sources. Accessibility is crucial not only to make efficient use of experimental facilities, but also to improve the reproducibility of results and enable new research based on previous experiments.
Description
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The Coherent X-ray Imaging Data Bank (CXIDB) offers scientists from all over the world a unique opportunity to access data from Coherent X-ray Imaging (CXI) experiments. It arose from the need to share the terabytes of data generated from X-ray free-electron laser experiments although it caters to all light sources. Accessibility is crucial not only to make efficient use of experimental facilities, but also to improve the reproducibility of results and enable new research based on previous experiments.
metasource: Fairsharing.orgversion: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Welcome to the Coherent X-ray Imaging Data Bank (CXIDB), a new database which offers scientists from all over the world a unique opportunity to access data from Coherent X-ray Imaging (CXI) experiments. CXIDB is dedicated to further the goal of making data from Coherent X-ray Imaging (CXI) experiments available to all, as well as archiving it.
metasource: re3data.orgversion: re3data.org: Coherent X-ray Imaging Data Bank; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3962D last accessed: 2022-11-04
Webpage:
http://cxidb.org/Webpage
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http://cxidb.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
https://cxidb.org/
metasource: re3data.orgversion: re3data.org: Coherent X-ray Imaging Data Bank; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3962D last accessed: 2022-11-04
Licence:
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Copyrights
metasource: re3data.orgversion: re3data.org: Coherent X-ray Imaging Data Bank; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3962D last accessed: 2022-11-04
Licence URL
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http://cxidb.org/browse.html
metasource: re3data.orgversion: re3data.org: Coherent X-ray Imaging Data Bank; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3962D last accessed: 2022-11-04
Publications:
Publications
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The Coherent X-ray Imaging Data Bank
PMID: 22936162
metasource: Fairsharing.org
version: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Publications
More detailed information about this field from each metasource.
The Coherent X-ray Imaging Data Bank
PMID: 22936162
metasource: Fairsharing.org
version: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
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The Coherent X-ray Imaging Data Bank
PubMed citations: 69.
69 articles citing: The Coherent X-ray Imaging Data Bank
Single-Image Super-Resolution Improvement of X-ray Single-Particle Diffraction Images Using a Convolutional Neural Network. PMID:35820663
Pre- and Post-publication Verification for Reproducible Data Mining in Macromolecular Crystallography. PMID:35507266
A multi-million image Serial Femtosecond Crystallography dataset collected at the European XFEL. PMID:35414146
Quantitative analysis of the effect of radiation on mitochondria structure using coherent diffraction imaging with a clustering algorithm. PMID:35371506
Pink-beam serial femtosecond crystallography for accurate structure-factor determination at an X-ray free-electron laser. PMID:34804544
Data reduction for serial crystallography using a robust peak finder. PMID:34667447
HDMF: Hierarchical Data Modeling Framework for Modern Science Data Standards. PMID:34632466
Discerning best practices in XFEL-based biological crystallography - standards for nonstandard experiments. PMID:34258002
Serial Electron Diffraction Data Processing With diffractem and CrystFEL. PMID:34095217
Moving beyond static snapshots: Protein dynamics and the Protein Data Bank. PMID:33961840
Effect of X-ray free-electron laser-induced shockwaves on haemoglobin microcrystals delivered in a liquid jet. PMID:33723266
Selecting XFEL single-particle snapshots by geometric machine learning. PMID:33644252
Data-driven challenges and opportunities in crystallography. PMID:33523208
An ultrahigh-resolution soft x-ray microscope for quantitative analysis of chemically heterogeneous nanomaterials. PMID:33328228
speckle-tracking: a software suite for ptychographic X-ray speckle tracking. PMID:33304226
Diffraction data from aerosolized Coliphage PR772 virus particles imaged with the Linac Coherent Light Source. PMID:33214568
Advances in long-wavelength native phasing at X-ray free-electron lasers. PMID:33209311
Small-wedge synchrotron and serial XFEL datasets for Cysteinyl leukotriene GPCRs. PMID:33184270
Perspectives on single particle imaging with x rays at the advent of high repetition rate x-ray free electron laser sources. PMID:32818147
Ptychographic X-ray speckle tracking with multi-layer Laue lens systems. PMID:32788900
Imaging plasma formation in isolated nanoparticles with ultrafast resonant scattering. PMID:32596413
Molecular mechanism of light-driven sodium pumping. PMID:32358514
SPIND-TC: an indexing method for two-color X-ray diffraction data. PMID:32356787
pinkIndexer - a universal indexer for pink-beam X-ray and electron diffraction snapshots. PMID:32124850
Free log-likelihood as an unbiased metric for coherent diffraction imaging. PMID:32060293
Evaluation of serial crystallographic structure determination within megahertz pulse trains. PMID:31832488
DatView: a graphical user interface for visualizing and querying large data sets in serial femtosecond crystallography. PMID:31798364
Towards a quantitative determination of strain in Bragg Coherent X-ray Diffraction Imaging: artefacts and sign convention in reconstructions. PMID:31758040
Time-resolved serial femtosecond crystallography at the European XFEL. PMID:31740816
FACT and FAIR with Big Data allows objectivity in science: The view of crystallography. PMID:31673568
XGANDALF - extended gradient descent algorithm for lattice finding. PMID:31475914
ClickX: a visualization-based program for preprocessing of serial crystallography data. PMID:31236097
Coherent diffractive imaging of microtubules using an X-ray laser. PMID:31197138
Experimental 3D coherent diffractive imaging from photon-sparse random projections. PMID:31098017
MHz data collection of a microcrystalline mixture of different jack bean proteins. PMID:30944333
Evaluation of the performance of classification algorithms for XFEL single-particle imaging data. PMID:30867930
Planthopper bugs use a fast, cyclic elastic recoil mechanism for effective vibrational communication at small body size. PMID:30860993
SPIND: a reference-based auto-indexing algorithm for sparse serial crystallography data. PMID:30713705
Biological single-particle imaging using XFELs - towards the next resolution revolution. PMID:30443350
Free-electron laser data for multiple-particle fluctuation scattering analysis. PMID:30277481
Structural biology data archiving - where we are and what lies ahead. PMID:29749603
Femtosecond X-ray coherent diffraction of aligned amyloid fibrils on low background graphene. PMID:29743480
A convolutional neural network-based screening tool for X-ray serial crystallography. PMID:29714177
Bringing diffuse X-ray scattering into focus. PMID:29455056
Serial femtosecond crystallography at the SACLA: breakthrough to dynamic structural biology. PMID:29196935
Validation of Structures in the Protein Data Bank. PMID:29174494
The slip-and-slide algorithm: a refinement protocol for detector geometry. PMID:29091058
Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source. PMID:28654088
Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses. PMID:28512572
Diffraction data of core-shell nanoparticles from an X-ray free electron laser. PMID:28398334
Hydroxyethyl cellulose matrix applied to serial crystallography. PMID:28386083
Nanosurveyor: a framework for real-time data processing. PMID:28261545
A computational framework for ptychographic reconstructions. PMID:28119552
The MAX IV imaging concept. PMID:28003953
Methods for Specifying Scientific Data Standards and Modeling Relationships with Applications to Neuroscience. PMID:27867355
Condor: a simulation tool for flash X-ray imaging. PMID:27504081
A data set from flash X-ray imaging of carboxysomes. PMID:27479842
Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser. PMID:27479754
The trickle before the torrent-diffraction data from X-ray lasers. PMID:27479637
Open data set of live cyanobacterial cells imaged using an X-ray laser. PMID:27479514
Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source. PMID:27478984
OnDA: online data analysis and feedback for serial X-ray imaging. PMID:27275150
Data processing pipeline for serial femtosecond crystallography at SACLA. PMID:27275146
Protein structure determination by single-wavelength anomalous diffraction phasing of X-ray free-electron laser data. PMID:27158504
Recent developments in CrystFEL. PMID:27047311
Facilitating model reconstruction for single-particle scattering using small-angle X-ray scattering methods. PMID:27047310
Structure of CPV17 polyhedrin determined by the improved analysis of serial femtosecond crystallographic data. PMID:25751308
Cheetah: software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data. PMID:24904246
Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers. PMID:24633409
Tags:
Tags
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imaging
metasource: Fairsharing.org
version: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
molecular structure
metasource: Fairsharing.org
version: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
x-ray diffraction
metasource: Fairsharing.org
version: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
cxi file format
metasource: re3data.org
version: re3data.org: Coherent X-ray Imaging Data Bank; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3962D last accessed: 2022-11-04
x-ray imaging
metasource: re3data.org
version: re3data.org: Coherent X-ray Imaging Data Bank; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3962D last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
imaging
metasource: Fairsharing.orgversion: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
molecular structure
metasource: Fairsharing.orgversion: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
x-ray diffraction
metasource: Fairsharing.orgversion: FAIRsharing.org: CXIDB; Coherent X-ray Imaging Data Bank; DOI: https://doi.org/10.25504/FAIRsharing.y6w78m; Last edited: March 9, 2021, 4:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
cxi file format
metasource: re3data.orgversion: re3data.org: Coherent X-ray Imaging Data Bank; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3962D last accessed: 2022-11-04
x-ray imaging
metasource: re3data.orgversion: re3data.org: Coherent X-ray Imaging Data Bank; editing status 2021-09-08; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3962D last accessed: 2022-11-04
imaging molecular structure x-ray diffraction cxi file format x-ray imaging
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