Center for Expanded Data Annotation and Retrieval Workbench
Names
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Center for Expanded Data Annotation and Retrieval Workbench
metasource: Fairsharing.org
version: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
CEDAR Workbench
metasource: Fairsharing.org
version: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Names
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Center for Expanded Data Annotation and Retrieval Workbench
metasource: Fairsharing.orgversion: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
CEDAR Workbench
metasource: Fairsharing.orgversion: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Names
More detailed information about this field from each metasource.
Center for Expanded Data Annotation and Retrieval Workbench
metasource: Fairsharing.orgversion: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
CEDAR Workbench
metasource: Fairsharing.orgversion: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
The Center for Expanded Data Annotation and Retrieval (CEDAR) Workbench is a database of metadata templates that define the data elements needed to describe particular types of biomedical experiments. The templates include controlled terms and synonyms for specific data elements. CEDAR is an end-to-end process that enables community-based organizations to collaborate to create metadata templates, investigators or curators to use the templates to define the metadata for individual experiments, and scientists to search the metadata to access and analyze the corresponding online datasets.
Description
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The Center for Expanded Data Annotation and Retrieval (CEDAR) Workbench is a database of metadata templates that define the data elements needed to describe particular types of biomedical experiments. The templates include controlled terms and synonyms for specific data elements. CEDAR is an end-to-end process that enables community-based organizations to collaborate to create metadata templates, investigators or curators to use the templates to define the metadata for individual experiments, and scientists to search the metadata to access and analyze the corresponding online datasets.
metasource: Fairsharing.orgversion: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Webpage:
https://metadatacenter.org/Webpage
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https://metadatacenter.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications:
Publications
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The center for expanded data annotation and retrieval
PMID: 26112029
metasource: Fairsharing.org
version: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
The center for expanded data annotation and retrieval
PMID: 26112029
metasource: Fairsharing.org
version: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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The center for expanded data annotation and retrieval
PubMed citations: 31.
31 articles citing: The center for expanded data annotation and retrieval
Categorizing metadata to help mobilize computable biomedical knowledge. PMID:35036552
The OpenNeuro resource for sharing of neuroscience data. PMID:34658334
Obstacles to the reuse of study metadata in ClinicalTrials.gov. PMID:33339830
BioHackathon 2015: Semantics of data for life sciences and reproducible research. PMID:32308977
Unleashing the value of Common Data Elements through the CEDAR Workbench. PMID:32308863
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. PMID:32219223
GXD's RNA-Seq and Microarray Experiment Search: using curated metadata to reliably find mouse expression studies of interest. PMID:32140729
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases. PMID:31210270
FAIRsharing as a community approach to standards, repositories and policies. PMID:30940948
Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual. PMID:30876875
The variable quality of metadata about biological samples used in biomedical experiments. PMID:30778255
Developing a healthcare dataset information resource (DIR) based on Semantic Web. PMID:30453940
The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories. PMID:30166985
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. PMID:30012108
Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center. PMID:29917015
Fast and Accurate Metadata Authoring Using Ontology-Based Recommendations. PMID:29854196
Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration. PMID:29390967
User needs analysis and usability assessment of DataMed - a biomedical data discovery index. PMID:29202203
The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations. PMID:29199020
An ontology-driven tool for structured data acquisition using Web forms. PMID:28764813
Predicting structured metadata from unstructured metadata. PMID:28637268
Predicting biomedical metadata in CEDAR: A study of Gene Expression Omnibus (GEO). PMID:28625880
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation. PMID:28592275
DATS, the data tag suite to enable discoverability of datasets. PMID:28585923
Envisioning the future of 'big data' biomedicine. PMID:28366789
Individualized Knowledge Graph: A Viable Informatics Path to Precision Medicine. PMID:28360346
Sharing Big Data. PMID:28250936
Clinical Research Informatics for Big Data and Precision Medicine. PMID:27830253
Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution. PMID:27392645
An informatics research agenda to support precision medicine: seven key areas. PMID:27107452
The FAIR Guiding Principles for scientific data management and stewardship. PMID:26978244
Tags:
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experimental measurement
metasource: Fairsharing.org
version: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
fair
metasource: Fairsharing.org
version: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protocol
metasource: Fairsharing.org
version: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
resource metadata
metasource: Fairsharing.org
version: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
study design
metasource: Fairsharing.org
version: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Tags
More detailed information about this field from each metasource.
experimental measurement
metasource: Fairsharing.orgversion: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
fair
metasource: Fairsharing.orgversion: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protocol
metasource: Fairsharing.orgversion: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
resource metadata
metasource: Fairsharing.orgversion: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
study design
metasource: Fairsharing.orgversion: FAIRsharing.org: CEDAR Workbench; Center for Expanded Data Annotation and Retrieval Workbench; DOI: https://doi.org/10.25504/FAIRsharing.V527H4; Last edited: Feb. 9, 2021, 4 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
experimental measurement protocol resource metadata study design
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