Other names: a3d-database
A3D Database is a database for structure-based protein aggregation predictions for the human proteome
proteomics protein folding, stability and design sequence analysis protein folds and structural domains protein structural motifs and surfaces
Protein Topology Graph library: Secondary structure-based protein topologies
ColabFold databases are MMseqs2 expandable profile databases to generate diverse multiple sequence alignments to predict protein structures.
Fuzzle 2.0 is a database of evolutionary related protein fragments.
Database of MacroMolecular INteractions
AlphaKnot is a server that measures entanglement in AlphaFold-solved protein models while considering pLDDT confidence values.
Biomolecule Stretching Database
Protein Common Interface Database
KnotProt collects information about proteins with knots or slipknots. The knotting complexity of proteins is presented in the form of a matrix diagram that shows users the knot type of the entire poly ...
Protein conformation and bond angles and lengths
The evolutionary history of topological variations in the CPA/AT transporters. Structural models, topology information and other details are presented in a searchable database, CPAfold
SPRITE is a protein structural motif database searching program. Users can upload a PDB file of a query protein structure, and SPRITE compares the input coordinates to a database of 3D side chain arra ...
Hydrogen/deuterium exchange data on protein folding and stability
Linear motifs in alpha-helical transmembrane proteins
Evolution of protein-protein Interfaces InterEvol is a resource for researchers to investigate the structural interaction of protein molecules and sequences using a variety of tools and resources.
Database for membrane protein thermodynamics for understanding folding and stability. MPTherm is a thermodynamic database of membrane proteins and their mutants, contains the thermodynamic data of me ...
The TransMembrane Protein Helix-Packing Database (TMPad) is an integrated repository of experimentally determined structural folds derived from helix-helix interactions in alpha-helical membrane prote ...
Evolutionary-oriented database of RNA recognition motif sequences.
Protein building blocks for structural analysis, modeling and design
Database of proteins classified by their functional surfaces.
PASS2 contains alignments of structural motifs of protein superfamilies. PASS2 is an automatic version of the original superfamily alignment database, CAMPASS (CAMbridge database of Protein Alignments ...