Tag: biological

The Open Biological and Biomedical Ontology (OBO) Foundry is a collective of ontology developers that are committed to collaboration and adherence to shared principles. The mission of the OBO Foundry is to develop a family of interoperable ontologies ...

Norine is a platform that includes a database of nonribosomal peptides together with tools for their analysis. Norine currently contains more than 1000 peptides.

SCRIPDB is a chemical structure database designed to make patent metadata accessible. We index public-domain chemical information contained in U.S. patents, and provide the full patent text, reactions, and relationships described within any individua ...

ADPriboDB is a database of ADP-ribosylated proteins and their literature-identified ADP-ribosylated residues. The database includes a variety of information for each entry, including any drug treatments performed to obtain the identification of the m ...

The Database of Antimicrobial Activity and Structure of Peptides (DBAASP) is an open-access, comprehensive database containing information on amino acid sequences, chemical modifications, 3D structures, bioactivities and toxicities of peptides that p ...

Biosynthetic gene cluster families

Review and classification of published variants in the ARSB gene. The purpose of this database is to support researchers and clinicians. understand structural changes on alylsulfatase B (ASB) caused by Mucopolysaccharidosis type VI (MPS6) mutations ...

Datanator is an integrated database of genomic and biochemical data designed to help investigators find data about specific molecules and reactions in specific organisms and specific environments for meta-analyses and mechanistic models. Datanator cu ...

A database of epigenome-wide association studies.

CCSbase is an all-in-one web interface for querying the CCS database and accessing the predictive model to support unknown compound identifications.

A chemical data resource with relational data between natural products and biological sources. NPBS Database of Shanghai Institute of Organic Chemistry.

Designing new materials suitable for specific applications is a long, complex, and costly process. Researchers think of new ideas based on intuition and experience. Their synthesis and evaluation require a tremendous amount of trial and error. In the ...

Database for hotspot mutations and annotations in cancer. Hotspots, recurrently mutated DNA positions in cancer, are thought to be oncogenic drivers because random chance is unlikely and the knowledge of clear examples of oncogenic hotspots in genes ...

The NEW ESID online database network. European Society for Immunodeficiencies. Exchange of ideas and information among doctors, nurses, biomedical investigators, patients and their families concerned with primary immunodeficiency diseases (PID). E ...

Protein-Nucleic Acid Binding Energetic Database

CrustyBase is an interactive online database for crustacean transcriptomes. CrustyBase provides an environment for navigating and visualising crustacean transcriptome datasets. Users can search existing transcriptomes or import new datasets of their ...

A Protein Data Bank extension database of pKa and pI theoretical values

Database for the mulberry metabolome. The Mulberry Metabolome Database. Comprehensively, freely, and User-friendly.

SAPdb (Self Assembling Peptides Database) is a database of short peptides and the corresponding nanostructures formed by self-assembly.

lumbar multifidus muscle segmentation from ultrasound images. LUMINOUS Database: Lumbar MUltifidus Muscle SegmentatIoN FrOm UltraSound.

Database for skin permeation of xenobiotics. Jupyter Notebook which leads through the code used to create huskinDB publication Figures. huskinDB is a human skin permeation database containing information on experimental protocols used. It provides ...

A dedicated database of non-B cell derived immunoglobulin variable region. Non-B cell derived ImmunoGlobulin Variable region Database. Welcome to NBIGV, a database dedicated to organizing and characterizing non-B cell derived immunoglobulins.

DatumKB is a freely accessible database of experimental results involving the function and regulation of human proteins in cultured cells. The results are manually curated from biological research literature using a shorthand language and stored as d ...

Cancer drivers at non-coding regions

Unified Biological Dictionaries (UniBioDicts) is a set of software packages that unite many of the most important biological controlled vocabularies, database vocabularies, and ontologies, under a common query-interface. These packages can access the ...

Limonada (Lipid Membrane Open Network And Database) is a database dedicated to the simulation of biological membranes. limonada intends to provide an open library of membranes, along with the description of lipids, topologies and forcefields mandato ...

RARe is a research infrastructure registered on the french national roadmap that brings together five networks of BRCs conserving genetic, genomic, and biological resources assembled and characterized by research on domestic animals, model or cultiva ...

An online database for skeletal injuries of known ages.

A public library of bat calls

open-access repository for surveys of antimicrobial resistance in animals.

A global database for bats in karsts and caves.

A comprehensive mitochondrial genome database for Mollusca.

The heterogeneous pharmacological medical biochemical network PharMeBINet.

A relational database for archiving biomolecular NMR spectral data.

A global tree allometry and crown architecture database.

Scalable volumetric 3D and 4D database for the cloud.

Database of HIV Amino Acid Sequences and Clinical Data of Infected Patients.

A web application gathering information about food enzyme preparations available on the European market.

APICURON is an open resource that tracks and credits the work of biocurators across multiple participating knowledgebases. Biocuration is essential to extract knowledge from research data and make it available in a structured and standardized way to ...

A new expert system for drug-excipient compatibility evaluation.

A graphical application for detecting known pathogenic short tandem repeats in sequencing data

Fully-automated and ultra-fast cell-type identification using specific marker combinations from single-cell transcriptomic data.

DINAX is a comprehensive database of inherited ataxias.

An Open Access Data Repository of Mass Spectra for Chemical Ecology.

CFM is a database of experimentally validated protocols for chemical compound-based direct reprogramming and transdifferentiation.

The Database of Pollinator Interactions (DoPI) documents British pollinator-plant associations.

A large eldercare-oriented BEnchmark database of SSVEP-BCI for The Aging population (eldBETA)

A systematic evidence map of health studies on 29 per- and polyfluoroalkyl substances.

Surface Plasmon Resonance Database (SPRD) is a surface plasmon resonance database of common factors for better experimental planning.

ACovPepDB is a comprehensive peptides database of anti-coronavirus peptides, which contains 518 enrties with 214 unique ACovPs manually extracted from research articles and public databases.

The Face Image Meta-Database (fIMDb) provides researchers with the tools to find the face imagesbest suited to their research, with filters to locate databases with people of a varied racial and ethnic backgrounds and ages.

piRNAdb it's a piwi-interacting RNA sequences storage and search system, providing some others relevant information like alignments, clusters, datasets and targets of these piRNAs.

PIDE (Particle Irradiation Data Ensemble) is a radiobiological database compiling more than 1100 pairs of in-vitro cell survival experiments after photon and ion irradiation.

A database of polar amylodogenic peptides from disordered proteins.

QSHGM, a database of QS in Human Gut Microbiota includes 28,567 redundancy removal QS synthases and receptors entries of 818 gut microbes.

The purpose of this web portal is to facilitate the discoverability of public data on plant biology managed by different laboratories across the world. The web portal indexes and makes findable any kind of plant data. Plant DataDiscovery is an imple ...

CoDNaS Quaternary is a high confidence database of conformational diversity in proteins that present a biologically relevant quaternary structure.

This project aims at building an International Wheat Information System (WheatIS) to support the wheat research community. The main objective is to provide a single-access web based system to access to the available data resources and bioinformatics ...

The Plant Co-expression Annotation Resource, or plantannot in short, is a system developed to find proteins that have no annotation or function assigned (PUFs, or Proteins of Unknown Function) and could be related to molecular mechanisms regarding ab ...

IND-enzymes is a repository for hydrolytic enzymes derived from thermophilic and psychrophilic bacterial species with potential industrial usage.

metaXplor is an interactive viral and microbial metagenomic data manager. It aims at storing large volumes of user-defined sample, sequence and assignment information while providing a user-friendly fine-filtering web-interface. This online GUI also ...

FADB-China is a molecular-level food adulteration database in China based on molecular fingerprints and similarity algorithms prediction expansion.

FAIDARE: FAIR Data-finder for Agronomic Research. The purpose of this portal is to facilitate the discoverability of public data on plant biology from a federation of established data repositories. It is based on the Breeding API (BrAPI) specificat ...

The BIONDA biomarker database provides structured information on all biomarker candidates published in PubMed articles. There is no limitation to any kind of diseases. To this end, PubMed article abstracts and renowned databases such as UniProt and H ...

Plant cytochrome P450 database and web-based tools for structural construction and ligand docking. It is a reliable template-based structure prediction method (PCPCM), and predicted the structures of 180 plant P450s with known functions. In addition, ...

A collective database of helmeted guinea fowl genomics. Helmeted guinea fowl (HGF; Numida meleagris) is vigorous, hardy, and mostly disease-free game birds. The rearing of HGF is a potential alternative poultry system. Because of the characteristics ...

A dedicated quality of life resource following the diagnosis and treatment of head and neck cancer. A unique online database of papers published on quality of life in head and neck cancer. HANDLE-ON-QOL is a unique online searchable database of all ...

PAI-WSIT (Pathologists Annotated and AI-empowered Whole-Slide Image Database for Tumors) is a comprehensive curated resource for cancerous pathology with deep learning. PAI-WSIT allows you to store your Digital Pathology images into the cloud platfor ...