Tag: biobank

Genotype-Tissue Expression (GTEx) - database which helps to study the relationship between genetic variation and gene expression in human tissues.

A structured controlled vocabulary for the source of an enzyme. It comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.

The BBMRI-ERIC Directory is a tool to share aggregate information about biobanks across Europe. The Directory welcomes new biobanks to join and publish information about themselves, including their contact information in the directory. The BBMRI-ERIC ...

The goal of Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) is to facilitate and coordinate the existing activities of the NHLBI Biorepository and the Data Repository and to expand their scope and usability to the sci ...

Standard Preanalytical Code (SPREC) identifies and records the main pre-analytical factors that may have impact on the integrity of sampled clinical fluids and solid biospecimens and their simple derivatives during collection, processing and storage. ...

The Biospecimen Reporting for Improved Study Quality (BRISQ) recommendations outlined are intended to apply to any study in which human biospecimens are used. The BRISQ guidelines are proposed as an important and timely resource tool to strengthen co ...

UK Biobank is a large-scale biomedical database and research resource that provides researchers access to detailed longitudinal phenotype, medical and genetic data from 500,000 volunteer participants.

MIABIS represents the minimum information required to initiate collaborations between biobanks and to enable the exchange of biological samples and data. The aim is to facilitate the reuse of bio-resources and associated data by harmonizing biobankin ...

Integrated platform connecting databases, registries, biobanks and clinical bioinformatics for rare disease research.

The EMIF catalogue contains extensive metadata on a number of European health data resources, such as registries, EHRs, biobanks etc., organized by a number of communities, such as EMIF-EHR, EMIF-AD, EPAD, ADVANCE, BigData@Heart, PIONEER etc. The met ...

Cell type specificity of genetic traits

Making Omics Data Useful to the Broader Scientific Community. Metabolic Disorders Knowledge Portal. ||| CORRECT NAME OF TOOL COULD ALSO BE 'MSK-KP'

The GA4GH Toolkit outlines a suite of secure standards and frameworks that will enable more meaningful research and patient data harmonization and sharing. This suite addresses a variety of challenges across the data sharing life cycle and is applica ...

This document specifies general requirements for the competence, impartiality and consistent operation of biobanks including quality control requirements to ensure biological material and data collections of appropriate quality. ISO 20387:2018 is app ...

Semantic data model of the set of common data elements for rare disease registration. To make rare disease registry data Interoperable (the 'I' in FAIR). Version 2.0. License CC0. Here, we present a semantic data model of the set of common data eleme ...

The colorectal cancer cohort (CRC-Cohort) is developed within the EU-funded project ADOPT BBMRI-ERIC (H2020) as a use case for piloting access to European biobanks. The CRC-Cohort is developed by BBMRI-ERIC, its National Nodes and BBMRI-ERIC partner ...

A Searchable Comparative Transcriptome Database for Healthy and Diseased Human Eye Tissue.

TwinsUK follows the lives of adult twins to understand how genetic variation relates to health and ageing. Over 30 years, collected data comprises self-reported, physical and cognitive measures, biochemical measures, 'omics and a wealth of biosamples ...

The first integrated database of gene annotation and expression profiles for variants related to human diseases. An integrated database of variants and gene expression profiles for genetic diseases.

C-BIG Repository is an open science resource that promotes scientific research and discovery in neurological diseases and accelerates the development of new treatments.

Collection of samples and data across the following diseases: Hereditary retinal dystrophy Outer retinal disease is the most common cause of blindness in the UK. It can be caused by a variety of single gene defects, including conditions such as retin ...

Collection of samples and data across the following diseases: Malignant neoplasm of liver, Malignant tumour of colon, Malignant tumour of pancreas Prospectively collected fresh tissues from surgery. All patients fully consented. Snap frozen paired ca ...

Samples & data for following diseases : Alzheimer's disease, Asthma, Atrial fibrillation and flutter, Cerebrovascular disease, Complete trisomy 21 syndrome, Congenital brain anomaly, Degenerative brain disorder and others. See full list in Descript ...

Samples & data for following disorders: Malignant melanoma of eye, Malignant neoplasm of endometrium of corpus uteri, Malignant liver neoplasm, Malignant adrenal gland tumour, Malignant cervix tumour and others. See full list in Description. The LBIH ...

Collection of samples and data across the following diseases: Hematologic neoplasm (disorder). An Observational Study of Peripheral T cell Lymphoma: Establishment of a Biobank and Database. The outcome of this study will be a biobank of PTCL cases wi ...

Collection of samples and data across the following diseases: Chronic multifocal osteomyelitis (disorder),Fit and well, Tonsillitis The Bristol Biobank (funded by the David Telling Charitable Trust with stakeholders from the University of Bristol and ...

Collection of samples and data across the following diseases: Chronic fatigue syndrome Participants: Over 650 participants are included in the study, including ME/CFS participants diagnosed by a physician and compliant with CDC '94 (Fukuda) and Canad ...

Collection of samples and data across the following diseases: Leukaemia, disease, Malignant lymphoma (disorder) A collection of Chronic Lymphocytic Leukaemia samples from patients on clinical trials. Includes the trials; AdMIRE, ARCTIC, CHOP-OR, CLL2 ...

Collection of samples and data across the following diseases: Fit and well The Cardiff University Biobank is a centralised biobanking facility sited at the University Hospital of Wales. We offer high quality human biosamples for research undertaken ...

Collection of samples and data across the following diseases: Carcinoma in situ of prostate, Fit and well, Malignant neoplasm of endometrium of corpus uteri (disorder), Malignant tumour of breast, Malignant tumour of colon, Malignant tumour of ovary. ...

Collection of samples and data across the following diseases: Giant cell arteritis (disorder), Osteoarthritis. The Oxford Musculoskeletal Biobank (OMB) is a resource of tissue and blood samples donated by patients for use in medical research (primari ...

Collection of samples and data across the following diseases: Malignant tumour of breast. King's Health Partners Cancer Biobank collects blood, tissue and urine samples from patients with a range of cancer types who are referred to Guy's & St Thomas' ...

Collection of samples and data across the following diseases: Fit and well, Hematologic neoplasm (disorder),Leukaemia, disease Cambridge Blood and Stem Cell Biobank collects and curates blood and blood-product derived samples from normal individuals ...

Collection of samples and data across the following diseases: Obesity (disorder). Bariatric surgery produces substantial, long-term weight loss with reduced morbidity and mortality. Genetics can strongly influence this response, as well as the initia ...

Collection of samples and data across the following diseases: Malignant neoplasm of brain, Malignant neoplasm of skin, Malignant tumour of thyroid gland (disorder), Malignant tumour of breast, Malignant tumour of lung. Facilitating high quality cance ...

Collection of samples and data across the following diseases: Malignant tumour of breast The Biobank stores normal and pathological specimens, surplus to diagnostic requirements, from relevant tissues and bodily fluids. Stored tissues include; snap-f ...

Collection of samples and data across the following diseases: Human immunodeficiency virus (organism) Fractionated blood products from patients with HIV, hepatitis C viral infections and others with bacteraemias.

Collection of samples and data across the following diseases: Leukaemia, disease The Central England Haemato-Oncology and oncology Research BioBank (CEHRB) predominantly stores excess material from haemato-oncology and oncology samples referred for d ...

Collection of samples and data across the following diseases: Fit and well, Malignant tumour of lung Arden Tissue Bank operates under a Human Tissue Authority post mortem licence within a district general hospital. The biobank has generic ethical ap ...

In order to do recall by genotype, participants have their DNA tested using one the SNP chip arrays from eg. Illumina and Affymetrix (now Thermosfisher). The current iteration is the UK Biobank v2.1 from Thermofisher, which measures ~820k markers.

Collection of samples and data across the following diseases: Antiphospholipid syndrome (disorder) A frozen biobank collection of plasma, serum, and DNA from APS patients. Each sample is anonymised blood sample collected from patients who consent for ...

Collection of samples and data across the following diseases: Carcinoma in situ of prostate The primary role of the CamUro-Onc is to consent, collect, log and store frozen tumour/normal tissues, blood and urine for use in approved research projects. ...

Multimorbidity is database of genetically interpretable comorbidities among common diseases in UK Biobank.

Complete genomic profiles of 1,496 Taiwanese reveal curated medical insights.

Virtual BioBanking (ViBiBa) for the DETECT multicenter trial program.

Database of collections of biomaterial and associated data subsumed under the umbrella of BBMRI-EU.

A reference for scientists seeking information about biological samples and data suitable for their research.

The MRC IEU OpenGWAS data infrastructure. The OpenGWAS database is constantly growing, but there may be studies that users have generated or need to include in their analyses that have not yet been incorporated.

Database of collections of biomaterial and associated data subsumed under the umbrella of BBMRI-NL.

CNGB (China National GeneBank) Nucleotide Sequence Archive (CNSA) is a service that provides online data submitting of data and metadata of projects, samples, experiments and sequencing. The CNSA is a system for archiving global omics data, dedicated ...

New developments and updates for genetic ancestry and cardiometabolic quantitative traits in diverse human populations. Internet-of-omics for human cardiovascular disease data. HeartBioPortal is now the largest human cardiovascular disease genetics ...

The Male Fertility Gene Atlas – A web tool for collecting and integrating data about epi-/genetic causes of male infertility. The Male Fertility Gene Atlas (MFGA) is a public platform for providing a fast, simple and straightforward access to OMICS ...