zfishbook
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Zfishbook is a real-time database of transposon-labeled mutants in zebrafish. This resource provides services for any size of GBT mutagenesis projects on zebrafish to encourage collaboration in the research community.
Description
More detailed information about this field from each metasource.
Zfishbook is a real-time database of transposon-labeled mutants in zebrafish. This resource provides services for any size of GBT mutagenesis projects on zebrafish to encourage collaboration in the research community.
metasource: Fairsharing.orgversion: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Transposon-labeled mutants in zebrafish
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Database of revertible protein trap gene-breaking transposon (GBT) insertional mutants in the zebrafish Danio rerio.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:15.544868
Webpage:
http://www.zfishbook.orgWebpage
More detailed information about this field from each metasource.
http://www.zfishbook.org
metasource: Fairsharing.orgversion: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://zfishbook.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:15.544868
Publications:
(6)
Publications
More detailed information about this field from each metasource.
In vivo protein trapping produces a functional expression codex of the vertebrate proteome
PMID: 21552255
metasource: Fairsharing.org
version: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Nicotine response genetics in the zebrafish
PMID: 19858493
metasource: Fairsharing.org
version: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Gene-breaking transposon mutagenesis reveals an essential role for histone H2afza in zebrafish larval development
PMID: 16859902
metasource: Fairsharing.org
version: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
SCORE imaging: specimen in a corrected optical rotational enclosure
PMID: 20528262
metasource: Fairsharing.org
version: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
zfishbook: connecting you to a world of zebrafish revertible mutants
PMID: 22067444
metasource: Fairsharing.org
version: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:15.544868
http://dx.doi.org/10.1093/nar/GKR957
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
In vivo protein trapping produces a functional expression codex of the vertebrate proteome
PMID: 21552255
metasource: Fairsharing.org
version: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Nicotine response genetics in the zebrafish
PMID: 19858493
metasource: Fairsharing.org
version: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Gene-breaking transposon mutagenesis reveals an essential role for histone H2afza in zebrafish larval development
PMID: 16859902
metasource: Fairsharing.org
version: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
SCORE imaging: specimen in a corrected optical rotational enclosure
PMID: 20528262
metasource: Fairsharing.org
version: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
zfishbook: connecting you to a world of zebrafish revertible mutants
PMID: 22067444
metasource: Fairsharing.org
version: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:15.544868
http://dx.doi.org/10.1093/nar/GKR957
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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In vivo protein trapping produces a functional expression codex of the vertebrate proteome
PubMed citations: 90.
90 articles citing: In vivo protein trapping produces a functional expression codex of the vertebrate proteome
A Primer Genetic Toolkit for Exploring Mitochondrial Biology and Disease Using Zebrafish. PMID:35893052
Cre/lox regulated conditional rescue and inactivation with zebrafish UFlip alleles generated by CRISPR-Cas9 targeted integration. PMID:35713402
Assessing Molecular Regulation of Vascular Permeability Using a VEGF-Inducible Zebrafish Model. PMID:35451770
Loss of Neuropilin2a/b or Sema3fa alters olfactory sensory axon dynamics and protoglomerular targeting. PMID:34980234
A Novel In Silico Benchmarked Pipeline Capable of Complete Protein Analysis: A Possible Tool for Potential Drug Discovery. PMID:34827106
Disruption of MAP7D1 Gene Function Increases the Risk of Doxorubicin-Induced Cardiomyopathy and Heart Failure. PMID:34327238
Fish primary embryonic pluripotent cells assemble into retinal tissue mirroring in vivo early eye development. PMID:34252023
Selective Requirements for Vascular Endothelial Cells and Circulating Factors in the Regulation of Retinal Neurogenesis. PMID:33898420
Knockout of SORBS2 Protein Disrupts the Structural Integrity of Intercalated Disc and Manifests Features of Arrhythmogenic Cardiomyopathy. PMID:32808564
Building the vertebrate codex using the gene breaking protein trap library. PMID:32779569
Efficient targeted integration directed by short homology in zebrafish and mammalian cells. PMID:32412410
Retinoid X receptor alpha is a spatiotemporally predominant therapeutic target for anthracycline-induced cardiotoxicity. PMID:32064346
Defective sarcomere organization and reduced larval locomotion and fish survival in slow muscle heavy chain 1 (smyhc1) mutants. PMID:31914689
Protein trap: a new Swiss army knife for geneticists? PMID:31728729
A model for reticular dysgenesis shows impaired sensory organ development and hair cell regeneration linked to cellular stress. PMID:31727854
Deficiency in the membrane protein Tmbim3a/Grinaa initiates cold-induced ER stress and cell death by activating an intrinsic apoptotic pathway in zebrafish. PMID:31171717
Blockade of MCU-Mediated Ca2+ Uptake Perturbs Lipid Metabolism via PP4-Dependent AMPK Dephosphorylation. PMID:30917323
Defective sarcomere assembly in smyd1a and smyd1b zebrafish mutants. PMID:30817176
Conditional mutagenesis by oligonucleotide-mediated integration of loxP sites in zebrafish. PMID:30427827
Analysis of a conditional gene trap reveals that tbx5a is required for heart regeneration in zebrafish. PMID:29933372
Zebrafish Embryonic Slow Muscle Is a Rapid System for Genetic Analysis of Sarcomere Organization by CRISPR/Cas9, but Not NgAgo. PMID:29374849
Changes to Extender, Cryoprotective Medium, and In Vitro Fertilization Improve Zebrafish Sperm Cryopreservation. PMID:29369744
The endocannabinoid gene faah2a modulates stress-associated behavior in zebrafish. PMID:29304078
Modeling GATAD1-Associated Dilated Cardiomyopathy in Adult Zebrafish. PMID:28955713
Transposons As Tools for Functional Genomics in Vertebrate Models. PMID:28888423
A novel inducible mutagenesis screen enables to isolate and clone both embryonic and adult zebrafish mutants. PMID:28871129
Zebrafish zic2 controls formation of periocular neural crest and choroid fissure morphogenesis. PMID:28689736
Dissection of zebrafish shha function using site-specific targeting with a Cre-dependent genetic switch. PMID:28513431
Regulation of cardiomyocyte behavior in zebrafish trabeculation by Neuregulin 2a signaling. PMID:28485381
LITTLE FISH, BIG DATA: ZEBRAFISH AS A MODEL FOR CARDIOVASCULAR AND METABOLIC DISEASE. PMID:28468832
Disruption of pdgfra alters endocardial and myocardial fusion during zebrafish cardiac assembly. PMID:28167492
Loss of Mgat5a-mediated N-glycosylation stimulates regeneration in zebrafish. PMID:27795824
Loss-of-function genetic tools for animal models: cross-species and cross-platform differences. PMID:27795562
A modifier screen identifies DNAJB6 as a cardiomyopathy susceptibility gene. PMID:27642634
Learning to Fish with Genetics: A Primer on the Vertebrate Model Danio rerio. PMID:27384027
Directional cerebrospinal fluid movement between brain ventricles in larval zebrafish. PMID:27329482
Pharyngeal morphogenesis requires fras1-itga8-dependent epithelial-mesenchymal interaction. PMID:27265864
Active recombinant Tol2 transposase for gene transfer and gene discovery applications. PMID:27042235
Biosecurity and Health Monitoring at the Zebrafish International Resource Center. PMID:27031282
Mayo Clinic Zebrafish Facility Overview. PMID:27023741
Attractant and repellent cues cooperate in guiding a subset of olfactory sensory axons to a well-defined protoglomerular target. PMID:26732841
Generation of an Enhancer-Trapping Vector for Insertional Mutagenesis in Zebrafish. PMID:26436547
Elucidating cannabinoid biology in zebrafish (Danio rerio). PMID:26192460
Mutagenesis Screen Identifies agtpbp1 and eps15L1 as Essential for T lymphocyte Development in Zebrafish. PMID:26161877
Protein-Trap Insertional Mutagenesis Uncovers New Genes Involved in Zebrafish Skin Development, Including a Neuregulin 2a-Based ErbB Signaling Pathway Required during Median Fin Fold Morphogenesis. PMID:26110643
Isolation of Novel CreERT2-Driver Lines in Zebrafish Using an Unbiased Gene Trap Approach. PMID:26083735
GeIST: a pipeline for mapping integrated DNA elements. PMID:26049161
High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9. PMID:26048245
A Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish. PMID:25840430
Cardiac transcriptome and dilated cardiomyopathy genes in zebrafish. PMID:25583992
Understanding cardiac sarcomere assembly with zebrafish genetics. PMID:25125181
New model systems to illuminate thyroid organogenesis. Part I: an update on the zebrafish toolbox. PMID:24783054
The zebrafish model system in cardiovascular research: A tiny fish with mighty prospects. PMID:24688998
A transgenic zebrafish model for monitoring glucocorticoid receptor activity. PMID:24679220
The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation. PMID:24578356
Targeted transgene integration overcomes variability of position effects in zebrafish. PMID:24449846
Time for the zebrafish ENCODE. PMID:24371190
Novel strategies for gene trapping and insertional mutagenesis mediated by Sleeping Beauty transposon. PMID:24251071
Conditional gene-trap mutagenesis in zebrafish. PMID:24233792
Mutagenesis and phenotyping resources in zebrafish for studying development and human disease. PMID:24162064
Gene trapping using gal4 in zebrafish. PMID:24121167
Breeding based remobilization of Tol2 transposon in Xenopus tropicalis. PMID:24116167
Smyd1b is required for skeletal and cardiac muscle function in zebrafish. PMID:24068325
Chicken β-globin insulators fail to shield the nkx2.5 promoter from integration site effects in zebrafish. PMID:24036575
Efficient disruption of Zebrafish genes using a Gal4-containing gene trap. PMID:24034702
High efficiency In Vivo genome engineering with a simplified 15-RVD GoldyTALEN design. PMID:23734242
Regulation of zebrafish sleep and arousal states: current and prospective approaches. PMID:23576957
Primary neuron culture for nerve growth and axon guidance studies in zebrafish (Danio rerio). PMID:23469201
Trapping cardiac recessive mutants via expression-based insertional mutagenesis screening. PMID:23283723
Reducing the noise in behavioral assays: sex and age in adult zebrafish locomotion. PMID:23244690
Genomic deletion induced by Tol2 transposon excision in zebrafish. PMID:23143102
ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics. PMID:23074187
The changing conditions of zebrafish mutants. PMID:22949684
Conditional control of gene function by an invertible gene trap in zebrafish. PMID:22908272
Efficient shRNA-mediated inhibition of gene expression in zebrafish. PMID:22788660
ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains. PMID:22706672
Revealing the role of phospholipase Cβ3 in the regulation of VEGF-induced vascular permeability. PMID:22674805
Turning gene function ON and OFF using sense and antisense photo-morpholinos in zebrafish. PMID:22492359
Functional analysis of slow myosin heavy chain 1 and myomesin-3 in sarcomere organization in zebrafish embryonic slow muscles. PMID:22361506
Tol2 gene trap integrations in the zebrafish amyloid precursor protein genes appa and aplp2 reveal accumulation of secreted APP at the embryonic veins. PMID:22275008
The lineage-specific gene ponzr1 is essential for zebrafish pronephric and pharyngeal arch development. PMID:22274699
Zebrafish: a model for the study of addiction genetics. PMID:22207143
Smyd1b_tv1, a key regulator of sarcomere assembly, is localized on the M-line of skeletal muscle fibers. PMID:22174829
Stringent analysis of gene function and protein-protein interactions using fluorescently tagged genes. PMID:22174071
Remobilization of Sleeping Beauty transposons in the germline of Xenopus tropicalis. PMID:22115366
Mechanistic research in aquatic toxicology: perspectives and future directions. PMID:22099346
zfishbook: connecting you to a world of zebrafish revertible mutants. PMID:22067444
A versatile gene trap to visualize and interrogate the function of the vertebrate proteome. PMID:22056673
All-in-one live: genes trapped, tagged and conditionally broken. PMID:21623352
Stressing zebrafish for behavioral genetics. PMID:21615261 -
Nicotine response genetics in the zebrafish
PubMed citations: 62.
62 articles citing: Nicotine response genetics in the zebrafish
Exposure to the gut microbiota from cigarette smoke-exposed mice exacerbates cigarette smoke extract-induced inflammation in zebrafish larvae. PMID:35492390
Translational relevance of forward genetic screens in animal models for the study of psychiatric disease. PMID:35124155
The new psychoactive substances 25H-NBOMe and 25H-NBOH induce abnormal development in the zebrafish embryo and interact in the DNA major groove. PMID:34888530
Analysis of potential genetic biomarkers and molecular mechanism of smoking-related postmenopausal osteoporosis using weighted gene co-expression network analysis and machine learning. PMID:34555052
E-liquids and vanillin flavoring disrupts retinoic acid signaling and causes craniofacial defects in Xenopus embryos. PMID:34543654
A systems omics-based approach to decode substance use disorders and neuroadaptations. PMID:34411560
Conservation of mechanisms regulating emotional-like responses on spontaneous nicotine withdrawal in zebrafish and mammals. PMID:33905756
Behavioral Effects of Developmental Exposure to JWH-018 in Wild-Type and Disrupted in Schizophrenia 1 (disc1) Mutant Zebrafish. PMID:33669793
Methionine Supplementation Abolishes Nicotine-Induced Place Preference in Zebrafish: a Behavioral and Molecular Analysis. PMID:33475949
Building the vertebrate codex using the gene breaking protein trap library. PMID:32779569
Identification of slit3 as a locus affecting nicotine preference in zebrafish and human smoking behaviour. PMID:32209227
Forward genetic approach for behavioral neuroscience using animal models. PMID:31932526
Functional characterization of the cannabinoid receptors 1 and 2 in zebrafish larvae using behavioral analysis. PMID:30820632
Novel zebrafish behavioral assay to identify modifiers of the rapid, nongenomic stress response. PMID:30588759
Conditional mutagenesis by oligonucleotide-mediated integration of loxP sites in zebrafish. PMID:30427827
Analysis of a conditional gene trap reveals that tbx5a is required for heart regeneration in zebrafish. PMID:29933372
The endocannabinoid gene faah2a modulates stress-associated behavior in zebrafish. PMID:29304078
Zebrafish models in neuropsychopharmacology and CNS drug discovery. PMID:28217866
Zebrafish Models of Prader-Willi Syndrome: Fast Track to Pharmacotherapeutics. PMID:27857842
ETS transcription factors in embryonic vascular development. PMID:27126901
The Nicotine-Evoked Locomotor Response: A Behavioral Paradigm for Toxicity Screening in Zebrafish (Danio rerio) Embryos and Eleutheroembryos Exposed to Methylmercury. PMID:27123921
Active recombinant Tol2 transposase for gene transfer and gene discovery applications. PMID:27042235
Genetic Analysis of the Touch Response in Zebrafish (Danio rerio). PMID:26456999
Mutagenesis Screen Identifies agtpbp1 and eps15L1 as Essential for T lymphocyte Development in Zebrafish. PMID:26161877
Protein-Trap Insertional Mutagenesis Uncovers New Genes Involved in Zebrafish Skin Development, Including a Neuregulin 2a-Based ErbB Signaling Pathway Required during Median Fin Fold Morphogenesis. PMID:26110643
Cardiac development in zebrafish and human embryonic stem cells is inhibited by exposure to tobacco cigarettes and e-cigarettes. PMID:25978043
Developing highER-throughput zebrafish screens for in-vivo CNS drug discovery. PMID:25729356
Molecular psychiatry of zebrafish. PMID:25349164
The cytisine derivatives, CC4 and CC26, reduce nicotine-induced conditioned place preference in zebrafish by acting on heteromeric neuronal nicotinic acetylcholine receptors. PMID:24862365
Activation of α2A-containing nicotinic acetylcholine receptors mediates nicotine-induced motor output in embryonic zebrafish. PMID:24738729
A transgenic zebrafish model for monitoring glucocorticoid receptor activity. PMID:24679220
Larval zebrafish model for FDA-approved drug repositioning for tobacco dependence treatment. PMID:24658307
The influences of parental diet and vitamin E intake on the embryonic zebrafish transcriptome. PMID:24657723
Role of neuronal nicotinic acetylcholine receptors (nAChRs) on learning and memory in zebrafish. PMID:24311357
Conditional gene-trap mutagenesis in zebrafish. PMID:24233792
Fish in a Dish: Drug Discovery for Hearing Habilitation. PMID:24187569
Gene trapping using gal4 in zebrafish. PMID:24121167
Chicken β-globin insulators fail to shield the nkx2.5 promoter from integration site effects in zebrafish. PMID:24036575
Efficient disruption of Zebrafish genes using a Gal4-containing gene trap. PMID:24034702
Learning and memory in zebrafish larvae. PMID:23935566
Cryopreservation Causes Genetic and Epigenetic Changes in Zebrafish Genital Ridges. PMID:23805321
ZebraZoom: an automated program for high-throughput behavioral analysis and categorization. PMID:23781175
Zebrafish models for ectopic mineralization disorders: practical issues from morpholino design to post-injection observations. PMID:23760765
Tracking zebrafish larvae in group--status and perspectives. PMID:23707495
The role of zebrafish (Danio rerio) in dissecting the genetics and neural circuits of executive function. PMID:23580329
Conditional control of gene function by an invertible gene trap in zebrafish. PMID:22908272
Tol2 gene trap integrations in the zebrafish amyloid precursor protein genes appa and aplp2 reveal accumulation of secreted APP at the embryonic veins. PMID:22275008
The lineage-specific gene ponzr1 is essential for zebrafish pronephric and pharyngeal arch development. PMID:22274699
Zebrafish: a model for the study of addiction genetics. PMID:22207143
Hematopoietic stem cells, hematopoiesis and disease: lessons from the zebrafish model. PMID:22206610
zfishbook: connecting you to a world of zebrafish revertible mutants. PMID:22067444
Genetics of GABAergic signaling in nicotine and alcohol dependence. PMID:22048727
Generating conditional mutations in zebrafish using gene-trap mutagenesis. PMID:21924154
Stressing zebrafish for behavioral genetics. PMID:21615261
In vivo protein trapping produces a functional expression codex of the vertebrate proteome. PMID:21552255
Zebrafish for the study of the biological effects of nicotine. PMID:21385906
Use of RecA fusion proteins to induce genomic modifications in zebrafish. PMID:21266475
The expanding universe of transposon technologies for gene and cell engineering. PMID:21138556
Reverse genetics in eukaryotes. PMID:20812916
Adult zebrafish as a model organism for behavioural genetics. PMID:20678210
SCORE imaging: specimen in a corrected optical rotational enclosure. PMID:20528262
Use of zebrafish as a model to understand mechanisms of addiction and complex neurobehavioral phenotypes. PMID:20493262 -
Gene-breaking transposon mutagenesis reveals an essential role for histone H2afza in zebrafish larval development
PubMed citations: 62.
62 articles citing: Gene-breaking transposon mutagenesis reveals an essential role for histone H2afza in zebrafish larval development
Building the vertebrate codex using the gene breaking protein trap library. PMID:32779569
Histones, Their Variants and Post-translational Modifications in Zebrafish Development. PMID:32582716
Forward genetic approach for behavioral neuroscience using animal models. PMID:31932526
Protein trap: a new Swiss army knife for geneticists? PMID:31728729
One-step efficient generation of dual-function conditional knockout and geno-tagging alleles in zebrafish. PMID:31663848
Analysis of a conditional gene trap reveals that tbx5a is required for heart regeneration in zebrafish. PMID:29933372
Variant Histone H2afv reprograms DNA methylation during early zebrafish development. PMID:29099280
Transposons As Tools for Functional Genomics in Vertebrate Models. PMID:28888423
LITTLE FISH, BIG DATA: ZEBRAFISH AS A MODEL FOR CARDIOVASCULAR AND METABOLIC DISEASE. PMID:28468832
Defects of the Glycinergic Synapse in Zebrafish. PMID:27445686
Active recombinant Tol2 transposase for gene transfer and gene discovery applications. PMID:27042235
Goldfish morphology as a model for evolutionary developmental biology. PMID:26952007
A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies. PMID:26635538
Generation of an Enhancer-Trapping Vector for Insertional Mutagenesis in Zebrafish. PMID:26436547
Postembryonic staging of wild-type goldfish, with brief reference to skeletal systems. PMID:26316229
Mutagenesis Screen Identifies agtpbp1 and eps15L1 as Essential for T lymphocyte Development in Zebrafish. PMID:26161877
Isolation of Novel CreERT2-Driver Lines in Zebrafish Using an Unbiased Gene Trap Approach. PMID:26083735
Short stories on zebrafish long noncoding RNAs. PMID:25110965
Time for the zebrafish ENCODE. PMID:24371190
Novel strategies for gene trapping and insertional mutagenesis mediated by Sleeping Beauty transposon. PMID:24251071
Impaired embryonic motility in dusp27 mutants reveals a developmental defect in myofibril structure. PMID:24203884
Gene trapping using gal4 in zebrafish. PMID:24121167
Chicken β-globin insulators fail to shield the nkx2.5 promoter from integration site effects in zebrafish. PMID:24036575
Efficient disruption of Zebrafish genes using a Gal4-containing gene trap. PMID:24034702
Learning and memory in zebrafish larvae. PMID:23935566
Gene transfer and mutagenesis mediated by Sleeping Beauty transposon in Nile tilapia (Oreochromis niloticus). PMID:23417791
Reverse genetics screen in zebrafish identifies a role of miR-142a-3p in vascular development and integrity. PMID:23285103
Trapping cardiac recessive mutants via expression-based insertional mutagenesis screening. PMID:23283723
Effective gene trapping mediated by Sleeping Beauty transposon. PMID:22952894
zfishbook: connecting you to a world of zebrafish revertible mutants. PMID:22067444
Retroviral-mediated Insertional Mutagenesis in Zebrafish. PMID:21924157
Haploinsufficiency of target of rapamycin attenuates cardiomyopathies in adult zebrafish. PMID:21757652
Stressing zebrafish for behavioral genetics. PMID:21615261
In vivo protein trapping produces a functional expression codex of the vertebrate proteome. PMID:21552255
Effective generation of transgenic reporter and gene trap lines of the medaka (Oryzias latipes) using the Ac/Ds transposon system. PMID:21533666
Somatic mutagenesis with a Sleeping Beauty transposon system leads to solid tumor formation in zebrafish. PMID:21533036
Investigating the genetics of visual processing, function and behaviour in zebrafish. PMID:21267617
Endogenous transposases affect differently Sleeping Beauty and Frog Prince transposons in fish cells. PMID:21120677
Analysis of the retina in the zebrafish model. PMID:21111217
Reverse genetics in eukaryotes. PMID:20812916
SCORE imaging: specimen in a corrected optical rotational enclosure. PMID:20528262
High-throughput behavioral screens: the first step towards finding genes involved in vertebrate brain function using zebrafish. PMID:20428068
Defective glycinergic synaptic transmission in zebrafish motility mutants. PMID:20161699
Remobilization of Tol2 transposons in Xenopus tropicalis. PMID:20096115
Latent learning in zebrafish (Danio rerio). PMID:20043955
Nicotine response genetics in the zebrafish. PMID:19858493
Zebrafish antipredatory responses: a future for translational research? PMID:19836422
Genome-wide analysis of Tol2 transposon reintegration in zebrafish. PMID:19737393
Transposon-mediated genome manipulation in vertebrates. PMID:19478801
A primer for morpholino use in zebrafish. PMID:19374550
Role of the histone variant H2A.Z/Htz1p in TBP recruitment, chromatin dynamics, and regulated expression of oleate-responsive genes. PMID:19273605
Genetic model system studies of the development of the enteric nervous system, gut motility and Hirschsprung's disease. PMID:19215589
Transposon tools hopping in vertebrates. PMID:19109308
The neurogenetic frontier--lessons from misbehaving zebrafish. PMID:18836206
The genomic distribution and function of histone variant HTZ-1 during C. elegans embryogenesis. PMID:18787694
Regulated gene insertion by steroid-induced PhiC31 integrase. PMID:18499713
Transposon-mediated mutagenesis in somatic cells: identification of transposon-genomic DNA junctions. PMID:18370070
Insertional mutagenesis strategies in zebrafish. PMID:18047701
Transposable elements in fish functional genomics: technical challenges and perspectives. PMID:18047698
Pigs taking wing with transposons and recombinases. PMID:18047690
Meganuclease and transposon mediated transgenesis in medaka. PMID:18047687
Technology transfer from worms and flies to vertebrates: transposition-based genome manipulations and their future perspectives. PMID:18047686 -
SCORE imaging: specimen in a corrected optical rotational enclosure
PubMed citations: 31.
31 articles citing: SCORE imaging: specimen in a corrected optical rotational enclosure
Assessing Molecular Regulation of Vascular Permeability Using a VEGF-Inducible Zebrafish Model. PMID:35451770
Dose Addition in the Induction of Craniofacial Malformations in Zebrafish Embryos Exposed to a Complex Mixture of Food-Relevant Chemicals with Dissimilar Modes of Action. PMID:35394809
Suppressing STAT3 activity protects the endothelial barrier from VEGF-mediated vascular permeability. PMID:34542605
Suppressing STAT3 activity protects the endothelial barrier from VEGF-mediated vascular permeability. PMID:33140053
zOPT: an open source optical projection tomography system and methods for rapid 3D zebrafish imaging. PMID:32923043
Building the vertebrate codex using the gene breaking protein trap library. PMID:32779569
Discovery of Novel Therapeutics for Muscular Dystrophies using Zebrafish Phenotypic Screens. PMID:31282429
Improved Imaging of Zebrafish Motility. PMID:30240125
The endocannabinoid gene faah2a modulates stress-associated behavior in zebrafish. PMID:29304078
Long-term Live Imaging Device for Improved Experimental Manipulation of Zebrafish Larvae. PMID:29155730
Intestinal Transit Time and Cortisol-Mediated Stress in Zebrafish. PMID:28727940
A Four-Well Dish for High-Resolution Longitudinal Imaging of the Tail and Posterior Trunk of Larval Zebrafish. PMID:28118101
zWEDGI: Wounding and Entrapment Device for Imaging Live Zebrafish Larvae. PMID:27676647
Advancing toxicology research using in vivo high throughput toxicology with small fish models. PMID:27328013
Compact plane illumination plugin device to enable light sheet fluorescence imaging of multi-cellular organisms on an inverted wide-field microscope. PMID:26819828
RhoC maintains vascular homeostasis by regulating VEGF-induced signaling in endothelial cells. PMID:26136364
Protein-Trap Insertional Mutagenesis Uncovers New Genes Involved in Zebrafish Skin Development, Including a Neuregulin 2a-Based ErbB Signaling Pathway Required during Median Fin Fold Morphogenesis. PMID:26110643
Light-addressable measurement of in vivo tissue oxygenation in an unanesthetized zebrafish embryo via phase-based phosphorescence lifetime detection. PMID:25856326
Generation of orientation tools for automated zebrafish screening assays using desktop 3D printing. PMID:24886511
A transgenic zebrafish model for monitoring glucocorticoid receptor activity. PMID:24679220
Gene trapping using gal4 in zebrafish. PMID:24121167
Primary neuron culture for nerve growth and axon guidance studies in zebrafish (Danio rerio). PMID:23469201
Kit signaling is required for development of coordinated motility patterns in zebrafish gastrointestinal tract. PMID:23297728
Revealing the role of phospholipase Cβ3 in the regulation of VEGF-induced vascular permeability. PMID:22674805
Expression of sclerostin in the developing zebrafish (Danio rerio) brain and skeleton. PMID:22575304
The lineage-specific gene ponzr1 is essential for zebrafish pronephric and pharyngeal arch development. PMID:22274699
Fully automated cellular-resolution vertebrate screening platform with parallel animal processing. PMID:22159032
zfishbook: connecting you to a world of zebrafish revertible mutants. PMID:22067444
Whole-animal imaging, gene function, and the Zebrafish Phenome Project. PMID:21963132
In vivo fluorescence lifetime optical projection tomography. PMID:21559145
In vivo protein trapping produces a functional expression codex of the vertebrate proteome. PMID:21552255 -
zfishbook: connecting you to a world of zebrafish revertible mutants
PubMed citations: 11.
11 articles citing: zfishbook: connecting you to a world of zebrafish revertible mutants
A Primer Genetic Toolkit for Exploring Mitochondrial Biology and Disease Using Zebrafish. PMID:35893052
Building the vertebrate codex using the gene breaking protein trap library. PMID:32779569
A model for reticular dysgenesis shows impaired sensory organ development and hair cell regeneration linked to cellular stress. PMID:31727854
Modeling GATAD1-Associated Dilated Cardiomyopathy in Adult Zebrafish. PMID:28955713
Learning to Fish with Genetics: A Primer on the Vertebrate Model Danio rerio. PMID:27384027
Mayo Clinic Zebrafish Facility Overview. PMID:27023741
Protein-Trap Insertional Mutagenesis Uncovers New Genes Involved in Zebrafish Skin Development, Including a Neuregulin 2a-Based ErbB Signaling Pathway Required during Median Fin Fold Morphogenesis. PMID:26110643
Understanding cardiac sarcomere assembly with zebrafish genetics. PMID:25125181
Time for the zebrafish ENCODE. PMID:24371190
Mutagenesis and phenotyping resources in zebrafish for studying development and human disease. PMID:24162064
Trapping cardiac recessive mutants via expression-based insertional mutagenesis screening. PMID:23283723
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More detailed information about this field from each metasource.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
transposon integration
metasource: Fairsharing.org
version: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
model organisms, comparative genomics
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
mobile genetic elements
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:15.544868
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:15.544868
genetic variation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:15.544868
proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:15.544868
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:15.544868
Tags
More detailed information about this field from each metasource.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
transposon integration
metasource: Fairsharing.orgversion: FAIRsharing.org: zfishbook; zfishbook; DOI: https://doi.org/10.25504/FAIRsharing.ne6jza; Last edited: Jan. 8, 2019, 1:14 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
human and other vertebrate genomes
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
model organisms, comparative genomics
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
mobile genetic elements
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:15.544868
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:15.544868
genetic variation
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:15.544868
proteins
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:15.544868
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:35:15.544868
gene expression phenotype transposon integration human and other vertebrate genomes model organisms mobile genetic elements gene transcripts genetic variation proteins molecular interactions, pathways and networks
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