expVIP
Customizable RNA-seq Data Analysis and Visualization Platform.
Description
More detailed information about this field from each metasource.
Customizable RNA-seq Data Analysis and Visualization Platform.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:47.227868
Webpage:
http://www.wheat-expression.com/Webpage
More detailed information about this field from each metasource.
http://www.wheat-expression.com/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:47.227868
Publications:
Publications
More detailed information about this field from each metasource.
expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform
PMID: 26869702
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:47.227868
Publications
More detailed information about this field from each metasource.
expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform
PMID: 26869702
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:47.227868
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expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform
PubMed citations: 129.
129 articles citing: expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform
Role of Wheat Phosphorus Starvation Tolerance 1 Genes in Phosphorus Acquisition and Root Architecture. PMID:35328041
Genome-Wide Association Study Reveals Genomic Regions Associated With Molybdenum Accumulation in Wheat Grains. PMID:35310638
Genome-Wide Association Study Reveals the Genetic Basis of Five Quality Traits in Chinese Wheat. PMID:35310636
Over-expression of TaDWF4 increases wheat productivity under low and sufficient nitrogen through enhanced carbon assimilation. PMID:35241776
Major Genomic Regions for Wheat Grain Weight as Revealed by QTL Linkage Mapping and Meta-Analysis. PMID:35222467
Conservation and Divergence of SQUAMOSA-PROMOTER BINDING PROTEIN-LIKE (SPL) Gene Family between Wheat and Rice. PMID:35216210
Genome-Wide Diversity of MADS-Box Genes in Bread Wheat is Associated with its Rapid Global Adaptability. PMID:35111207
Genome-wide analysis of TALE superfamily in Triticum aestivum reveals TaKNOX11-A is involved in abiotic stress response. PMID:35100988
Rubiscosome gene expression is balanced across the hexaploid wheat genome. PMID:35083631
Genome-wide identification and expression analysis of the GSK gene family in wheat (Triticum aestivum L.). PMID:35083611
Resistance of the Wheat Cultivar 'Renan' to Septoria Leaf Blotch Explained by a Combination of Strain Specific and Strain Non-Specific QTL Mapped on an Ultra-Dense Genetic Map. PMID:35052440
Transcriptomic and Physiological Response of Durum Wheat Grain to Short-Term Heat Stress during Early Grain Filling. PMID:35009063
Genome-Wide Analysis of DEAD-box RNA Helicase Family in Wheat (Triticum aestivum) and Functional Identification of TaDEAD-box57 in Abiotic Stress Responses. PMID:34956297
Wheat genetic loci conferring resistance to stripe rust in the face of genetically diverse races of the fungus Puccinia striiformis f. sp. tritici. PMID:34837509
Ectopic expression of TaBG1 increases seed size and alters nutritional characteristics of the grain in wheat but does not lead to increased yields. PMID:34758742
Plant PhysioSpace: a robust tool to compare stress response across plant species. PMID:34734276
Genetic dissection of quantitative trait loci for grain size and weight by high-resolution genetic mapping in bread wheat (Triticum aestivum L.). PMID:34647130
Down-expression of TaPIN1s Increases the Tiller Number and Grain Yield in Wheat. PMID:34592922
Genome-wide identification and characterization of the Lateral Organ Boundaries Domain (LBD) gene family in polyploid wheat and related species. PMID:34447619
Genome-wide identification of alcohol dehydrogenase (ADH) gene family under waterlogging stress in wheat (Triticum aestivum). PMID:34386306
Localised expression of OsIAA29 suggests a key role for auxin in regulating development of the dorsal aleurone of early rice grains. PMID:34324072
Identification and validation of two major QTLs for spike compactness and length in bread wheat (Triticum aestivum L.) showing pleiotropic effects on yield-related traits. PMID:34309684
Identification of Single Nucleotide Polymorphism in TaSBEIII and Development of KASP Marker Associated With Grain Weight in Wheat. PMID:34306037
Genome-Wide Association Mapping for Yield and Related Traits Under Drought Stressed and Non-stressed Environments in Wheat. PMID:34239537
Identification of Main-Effect and Environmental Interaction QTL and Their Candidate Genes for Drought Tolerance in a Wheat RIL Population Between Two Elite Spring Cultivars. PMID:34220939
Integrative Modelling of Gene Expression and Digital Phenotypes to Describe Senescence in Wheat. PMID:34208213
Conservation and divergence of the TaSOS1 gene family in salt stress response in wheat (Triticum aestivum L.). PMID:34177146
Genome-Wide Identification of Wheat WRKY Gene Family Reveals That TaWRKY75-A Is Referred to Drought and Salt Resistances. PMID:34149760
Large-scale integration of meta-QTL and genome-wide association study discovers the genomic regions and candidate genes for yield and yield-related traits in bread wheat. PMID:34142166
Meta-QTL analysis and identification of candidate genes for quality, abiotic and biotic stress in durum wheat. PMID:34088972
Ectopic expression of Triticum polonicum VRT-A2 underlies elongated glumes and grains in hexaploid wheat in a dosage-dependent manner. PMID:34009390
Increased Wheat Protein Content via Introgression of an HMW Glutenin Selectively Reshapes the Grain Proteome. PMID:34000434
Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response. PMID:33992092
Annotation and Molecular Characterisation of the TaIRO3 and TaHRZ Iron Homeostasis Genes in Bread Wheat (Triticum aestivum L.). PMID:33925484
Expansion and Molecular Characterization of AP2/ERF Gene Family in Wheat (Triticum aestivum L.). PMID:33868370
Analysis of the chromosomal clustering of Fusarium-responsive wheat genes uncovers new players in the defence against head blight disease. PMID:33811222
Zinc Finger-Homeodomain Transcriptional Factors (ZF-HDs) in Wheat (Triticum aestivum L.): Identification, Evolution, Expression Analysis and Response to Abiotic Stresses. PMID:33809871
The Landscape of the Genomic Distribution and the Expression of the F-Box Genes Unveil Genome Plasticity in Hexaploid Wheat during Grain Development and in Response to Heat and Drought Stress. PMID:33803701
Characterization of the Resistance to Powdery Mildew and Leaf Rust Carried by the Bread Wheat Cultivar Victo. PMID:33803699
Stripe rust resistance gene Yr34 (synonym Yr48) is located within a distal translocation of Triticum monococcum chromosome 5AmL into common wheat. PMID:33791822
Genome-wide characterization and expression analysis of pseudo-response regulator gene family in wheat. PMID:33782785
Extensive structural variation in the Bowman-Birk inhibitor family in common wheat (Triticum aestivum L.). PMID:33765923
Rust expression browser: an open source database for simultaneous analysis of host and pathogen gene expression profiles with expVIP. PMID:33750297
Mediation of a GDSL Esterase/Lipase in Carotenoid Esterification in Tritordeum Suggests a Common Mechanism of Carotenoid Esterification in Triticeae Species. PMID:33746990
Genome-wide association study reveals the genetic basis of yield- and quality-related traits in wheat. PMID:33740889
Identification and Validation of a Novel Locus Controlling Spikelet Number in Bread Wheat (Triticum aestivum L.). PMID:33719283
Reinvestigation of THOUSAND-GRAIN WEIGHT 6 grain weight genes in wheat and rice indicates a role in pollen development rather than regulation of auxin content in grains. PMID:33687498
Wheat omics: Classical breeding to new breeding technologies. PMID:33613071
Genome-wide identification of Ran GTPase family genes from wheat (T. aestivum) and their expression profile during developmental stages and abiotic stress conditions. PMID:33609188
Identification of stress defensive proteins in common wheat-Thinopyron intermedium translocation line YW642 developing grains via comparative proteome analysis. PMID:33603547
The branched-chain amino acid aminotransferase TaBCAT1 modulates amino acid metabolism and positively regulates wheat rust susceptibility. PMID:33565586
Identification and development of novel salt-responsive candidate gene based SSRs (cg-SSRs) and MIR gene based SSRs (mir-SSRs) in bread wheat (Triticum aestivum). PMID:33500485
Genome-Wide Analysis of LysM-Containing Gene Family in Wheat: Structural and Phylogenetic Analysis during Development and Defense. PMID:33383636
Genome-Wide Identification and Expression Analysis of the Histone Deacetylase Gene Family in Wheat (Triticum aestivum L.). PMID:33374252
Genome-wide member identification, phylogeny and expression analysis of PEBP gene family in wheat and its progenitors. PMID:33362967
Genome-wide identification and evolution of HECT genes in wheat. PMID:33344088
Toward the Genetic Basis and Multiple QTLs of Kernel Hardness in Wheat. PMID:33255282
Identification and Validation of a Novel Major Quantitative Trait Locus for Plant Height in Common Wheat (Triticum aestivum L.). PMID:33193748
Identification, evolution, expression, and docking studies of fatty acid desaturase genes in wheat (Triticum aestivum L.). PMID:33167859
QTL detection and putative candidate gene prediction for leaf rolling under moisture stress condition in wheat. PMID:33122772
A small secreted protein from Zymoseptoria tritici interacts with a wheat E3 ubiquitin ligase to promote disease. PMID:33095257
Identification of polycomb repressive complex 1 and 2 core components in hexaploid bread wheat. PMID:33050875
Trehalose 6-phosphate signalling and impact on crop yield. PMID:33005918
Dissecting the Molecular Function of Triticum aestivum STI Family Members Under Heat Stress. PMID:32973870
Transcriptome profiling at osmotic and ionic phases of salt stress response in bread wheat uncovers trait-specific candidate genes. PMID:32938380
Characterization of the Heavy-Metal-Associated Isoprenylated Plant Protein (HIPP) Gene Family from Triticeae Species. PMID:32867204
Genome-wide analysis of the polyamine oxidase gene family in wheat (Triticum aestivum L.) reveals involvement in temperature stress response. PMID:32866160
Wheat Disease Resistance Genes and Their Diversification Through Integrated Domain Fusions. PMID:32849852
The Wheat GENIE3 Network Provides Biologically-Relevant Information in Polyploid Wheat. PMID:32747342
The Battle to Sequence the Bread Wheat Genome: A Tale of the Three Kingdoms. PMID:32561470
Applying genomic resources to accelerate wheat biofortification. PMID:32528079
Genome-wide identification and characterization of the fibrillin gene family in Triticum aestivum. PMID:32518731
Taxonomically Restricted Wheat Genes Interact With Small Secreted Fungal Proteins and Enhance Resistance to Septoria Tritici Blotch Disease. PMID:32477375
TEOSINTE BRANCHED1 regulates height and stem internode length in bread wheat. PMID:32449515
Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. PMID:32384671
Loss of TaIRX9b gene function in wheat decreases chain length and amount of arabinoxylan in grain but increases cross-linking. PMID:32356579
A roadmap for gene functional characterisation in crops with large genomes: Lessons from polyploid wheat. PMID:32208137
Multifamily QTL analysis and comprehensive design of genotypes for high-quality soft wheat. PMID:32160264
Misexpression of a transcriptional repressor candidate provides a molecular mechanism for the suppression of awns by Tipped 1 in wheat. PMID:32103263
Genomics-Enabled Analysis of Puroindoline b2 Genes Identifies New Alleles in Wheat and Related Triticeae Species. PMID:32075191
Wheat PP2C-a10 regulates seed germination and drought tolerance in transgenic Arabidopsis. PMID:32065246
Gene Expression Pattern of Vacuolar-Iron Transporter-Like (VTL) Genes in Hexaploid Wheat during Metal Stress. PMID:32053953
Metabolite-based genome-wide association study enables dissection of the flavonoid decoration pathway of wheat kernels. PMID:31930656
RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics. PMID:31856735
Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.). PMID:31842737
PDIL1-2 can indirectly and negatively regulate expression of the AGPL1 gene in bread wheat. PMID:31699158
A Co-Expression Network in Hexaploid Wheat Reveals Mostly Balanced Expression and Lack of Significant Gene Loss of Homeologous Meiotic Genes Upon Polyploidization. PMID:31681395
Dissection of genetic factors underlying grain size and fine mapping of QTgw.cau-7D in common wheat (Triticum aestivum L.). PMID:31570967
ABA-Induced Sugar Transporter TaSTP6 Promotes Wheat Susceptibility to Stripe Rust. PMID:31540949
Conserved residues in the wheat (Triticum aestivum) NAM-A1 NAC domain are required for protein binding and when mutated lead to delayed peduncle and flag leaf senescence. PMID:31533618
Identification of the quantitative trait loci controlling spike-related traits in hexaploid wheat (Triticum aestivum L.). PMID:31529397
APETALA 2-like genes AP2L2 and Q specify lemma identity and axillary floral meristem development in wheat. PMID:31494998
Identification of a Dominant Chlorosis Phenotype Through a Forward Screen of the Triticum turgidum cv. Kronos TILLING Population. PMID:31396255
Expansion and Functional Diversification of SKP1-Like Genes in Wheat (Triticum aestivum L.). PMID:31277523
Meta-Analysis of the QTLome of Fusarium Head Blight Resistance in Bread Wheat: Refining the Current Puzzle. PMID:31263469
Serpins: Genome-Wide Characterisation and Expression Analysis of the Serine Protease Inhibitor Family in Triticum aestivum. PMID:31227524
Map-based cloning of QFhb.mgb-2A identifies a WAK2 gene responsible for Fusarium Head Blight resistance in wheat. PMID:31061411
Analysis of the recombination landscape of hexaploid bread wheat reveals genes controlling recombination and gene conversion frequency. PMID:30982471
Genome-wide identification and expression profiling of trihelix gene family under abiotic stresses in wheat. PMID:30975075
Genome-wide Analysis of bZIP Transcription Factors in wheat and Functional Characterization of a TabZIP under Abiotic Stress. PMID:30872683
Genome-wide analysis, expansion and expression of the NAC family under drought and heat stresses in bread wheat (T. aestivum L.). PMID:30840709
VERNALIZATION1 controls developmental responses of winter wheat under high ambient temperatures. PMID:30770359
From markers to genome-based breeding in wheat. PMID:30673804
Genome wide characterization of barley NAC transcription factors enables the identification of grain-specific transcription factors exclusive for the Poaceae family of monocotyledonous plants. PMID:30592743
Identification and Characterization of the EXO70 Gene Family in Polyploid Wheat and Related Species. PMID:30586859
Genome-Wide Transcription During Early Wheat Meiosis Is Independent of Synapsis, Ploidy Level, and the Ph1 Locus. PMID:30564262
DAWN: a resource for yielding insights into the diversity among wheat genomes. PMID:30558550
Hotspots in the genomic architecture of field drought responses in wheat as breeding targets. PMID:30446876
A reductionist approach to dissecting grain weight and yield in wheat. PMID:30421518
Applying the latest advances in genomics and phenomics for trait discovery in polyploid wheat. PMID:30407665
Genome-wide identification and analysis of WD40 proteins in wheat (Triticum aestivum L.). PMID:30400808
Genetic pathways controlling inflorescence architecture and development in wheat and barley. PMID:30325110
Characterization and Expression Patterns of Auxin Response Factors in Wheat. PMID:30283490
Heat in Wheat: Exploit Reverse Genetic Techniques to Discover New Alleles Within the Triticum durum sHsp26 Family. PMID:30283469
Final grain weight is not limited by the activity of key starch-synthesising enzymes during grain filling in wheat. PMID:30165455
Gene editing and mutagenesis reveal inter-cultivar differences and additivity in the contribution of TaGW2 homoeologues to grain size and weight in wheat. PMID:30136108
Genome-wide analysis of oligopeptide transporters and detailed characterization of yellow stripe transporter genes in hexaploid wheat. PMID:30120602
Genome-wide identification and analysis of the ALTERNATIVE OXIDASE gene family in diploid and hexaploid wheat. PMID:30074999
QTL Mapping and Validation of Adult Plant Resistance to Stripe Rust in Chinese Wheat Landrace Humai 15. PMID:30026752
Spt6 Association with RNA Polymerase II Directs mRNA Turnover During Transcription. PMID:29932900
RNAi-Mediated Downregulation of Inositol Pentakisphosphate Kinase (IPK1) in Wheat Grains Decreases Phytic Acid Levels and Increases Fe and Zn Accumulation. PMID:29559984
TEOSINTE BRANCHED1 Regulates Inflorescence Architecture and Development in Bread Wheat (Triticum aestivum). PMID:29444813
Ubiquitin-related genes are differentially expressed in isogenic lines contrasting for pericarp cell size and grain weight in hexaploid wheat. PMID:29370763
Developmental responses of bread wheat to changes in ambient temperature following deletion of a locus that includes FLOWERING LOCUS T1. PMID:29314053
Genetic and physical mapping of anther extrusion in elite European winter wheat. PMID:29121111
POTAGE: A Visualisation Tool for Speeding up Gene Discovery in Wheat. PMID:29085014
Genome-Wide Sequence and Expression Analysis of the NAC Transcription Factor Family in Polyploid Wheat. PMID:28698232
Wheat Vacuolar Iron Transporter TaVIT2 Transports Fe and Mn and Is Effective for Biofortification. PMID:28684433
Genetic Architecture of Anther Extrusion in Spring and Winter Wheat. PMID:28559904
Tags:
Tags
More detailed information about this field from each metasource.
plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:47.227868
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:47.227868
rna-seq
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:47.227868
data visualisation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:47.227868
Tags
More detailed information about this field from each metasource.
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:47.227868
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:47.227868
rna-seq
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:47.227868
data visualisation
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:32:47.227868
plant biology gene expression rna sequence data visualisation
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