Web3 Unique Representation of Carbohydrate Structures
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Web3 Unique Representation of Carbohydrate Structures
metasource: Fairsharing.org
version: None
WURCS
metasource: Fairsharing.org
version: None
Names
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Web3 Unique Representation of Carbohydrate Structures
metasource: Fairsharing.orgversion: None
WURCS
metasource: Fairsharing.orgversion: None
Names
More detailed information about this field from each metasource.
Web3 Unique Representation of Carbohydrate Structures
metasource: Fairsharing.orgversion: None
WURCS
metasource: Fairsharing.orgversion: None
The Web3 Unique Representation of Carbohydrate Structures (WURCS) defines a generalizable and unique linear representation for carbohydrate structures. A recent update (WURCS 2.0) was created to handle structural ambiguity around (potential) carbonyl groups incidental to the carbohydrate analysis. WURCS 2.0 can represent a wider variety of carbohydrate structures containing ambiguous monosaccharides, such as those whose ring closure is undefined or whose anomeric information is only known.
Description
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The Web3 Unique Representation of Carbohydrate Structures (WURCS) defines a generalizable and unique linear representation for carbohydrate structures. A recent update (WURCS 2.0) was created to handle structural ambiguity around (potential) carbonyl groups incidental to the carbohydrate analysis. WURCS 2.0 can represent a wider variety of carbohydrate structures containing ambiguous monosaccharides, such as those whose ring closure is undefined or whose anomeric information is only known.
metasource: Fairsharing.orgversion: None
Webpage:
http://www.wurcs-wg.orgWebpage
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Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
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Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: None
Licence URL
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Publications:
Publications
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WURCS: the Web3 unique representation of carbohydrate structures
PMID: 24897372
metasource: Fairsharing.org
version: None
WURCS 2.0 Update To Encapsulate Ambiguous Carbohydrate Structures
PMID: 28263066
metasource: Fairsharing.org
version: None
Publications
More detailed information about this field from each metasource.
WURCS: the Web3 unique representation of carbohydrate structures
PMID: 24897372
metasource: Fairsharing.org
version: None
WURCS 2.0 Update To Encapsulate Ambiguous Carbohydrate Structures
PMID: 28263066
metasource: Fairsharing.org
version: None
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WURCS: the Web3 unique representation of carbohydrate structures
PubMed citations: 29.
29 articles citing: WURCS: the Web3 unique representation of carbohydrate structures
Dealing with the Ambiguity of Glycan Substructure Search. PMID:35011294
RDFizing the biosynthetic pathway of E.coli O-antigen to enable semantic sharing of microbiology data. PMID:34809564
Informatics Ecosystems to Advance the Biology of Glycans. PMID:34626414
An Interactive View of Glycosylation. PMID:34611864
Glycoinformatics Tools for Comprehensive Characterization of Glycans Enzymatically Released from Proteins. PMID:34611862
Towards Consistency in Geometry Restraints for Carbohydrates in the Pyranose form: Modern Dictionary Generators Reviewed. PMID:34477506
Glycowork: A Python package for glycan data science and machine learning. PMID:34192308
FGDB: Database of follicle stimulating hormone glycans. PMID:33897975
Molecular representations in AI-driven drug discovery: a review and practical guide. PMID:33431035
GAG-DB, the New Interface of the Three-Dimensional Landscape of Glycosaminoglycans. PMID:33322545
A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR). PMID:33178355
Leveraging glycomics data in glycoprotein 3D structure validation with Privateer. PMID:33093930
Computational tools for drawing, building and displaying carbohydrates: a visual guide. PMID:33082879
BioHackathon 2015: Semantics of data for life sciences and reproducible research. PMID:32308977
Towards a standardized bioinformatics infrastructure for N- and O-glycomics. PMID:31332201
GlycanFormatConverter: a conversion tool for translating the complexities of glycans. PMID:30535258
Finite Dimension: A Mathematical Tool to Analise Glycans. PMID:29535393
Annotation of Peptide Structures Using SMILES and Other Chemical Codes-Practical Solutions. PMID:29186902
GLYDE-II: The GLYcan data exchange format. PMID:28955652
Internet Databases of the Properties, Enzymatic Reactions, and Metabolism of Small Molecules-Search Options and Applications in Food Science. PMID:27929431
Glycosaminoglycanomics: where we are. PMID:27900575
The Virtual Screening of the Drug Protein with a Few Crystal Structures Based on the Adaboost-SVM. PMID:27127534
A Knowledge-Based System for Display and Prediction of O-Glycosylation Network Behaviour in Response to Enzyme Knockouts. PMID:27054587
Property Graph vs RDF Triple Store: A Comparison on Glycan Substructure Search. PMID:26656740
SugarBindDB, a resource of glycan-mediated host-pathogen interactions. PMID:26578555
Automatic generation of bioinformatics tools for predicting protein-ligand binding sites. PMID:26545824
GlyTouCan 1.0--The international glycan structure repository. PMID:26476458
Many InChIs and quite some feat. PMID:26081259
GlycoRDF: an ontology to standardize glycomics data in RDF. PMID:25388145 -
WURCS 2.0 Update To Encapsulate Ambiguous Carbohydrate Structures
PubMed citations: 16.
16 articles citing: WURCS 2.0 Update To Encapsulate Ambiguous Carbohydrate Structures
Source files of the Carbohydrate Structure Database: the way to sophisticated analysis of natural glycans. PMID:35354826
SugarDrawer: A Web-Based Database Search Tool with Editing Glycan Structures. PMID:34885724
Informatics Ecosystems to Advance the Biology of Glycans. PMID:34626414
Towards Consistency in Geometry Restraints for Carbohydrates in the Pyranose form: Modern Dictionary Generators Reviewed. PMID:34477506
Enhancing the interoperability of glycan data flow between ChEBI, PubChem and GlyGen. PMID:34314492
Modernized uniform representation of carbohydrate molecules in the Protein Data Bank. PMID:33978738
Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank. PMID:33657417
Molecular representations in AI-driven drug discovery: a review and practical guide. PMID:33431035
A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR). PMID:33178355
The international glycan repository GlyTouCan version 3.0. PMID:33125071
Leveraging glycomics data in glycoprotein 3D structure validation with Privateer. PMID:33093930
GlycoGlyph: a glycan visualizing, drawing and naming application. PMID:32170934
A Perspective on the Confident Comparison of Glycoprotein Site-Specific Glycosylation in Sample Cohorts. PMID:31833756
glypy: An Open Source Glycoinformatics Library. PMID:31310539
GlycanFormatConverter: a conversion tool for translating the complexities of glycans. PMID:30535258
Annotation of Peptide Structures Using SMILES and Other Chemical Codes-Practical Solutions. PMID:29186902
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Tags
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carbohydrate
metasource: Fairsharing.org
version: None
chemical formula
metasource: Fairsharing.org
version: None
molecular structure
metasource: Fairsharing.org
version: None
Tags
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carbohydrate
metasource: Fairsharing.orgversion: None
chemical formula
metasource: Fairsharing.orgversion: None
molecular structure
metasource: Fairsharing.orgversion: None
carbohydrate chemical formula molecular structure
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