Semanticscience Integrated Ontology
Names
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Semanticscience Integrated Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: SIO; Semanticscience Integrated Ontology; DOI: https://doi.org/10.25504/FAIRsharing.dpkb5f; Last edited: Jan. 29, 2020, 11:43 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1.55 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SIO
SIO
metasource: Fairsharing.org
version: FAIRsharing.org: SIO; Semanticscience Integrated Ontology; DOI: https://doi.org/10.25504/FAIRsharing.dpkb5f; Last edited: Jan. 29, 2020, 11:43 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1.55 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SIO
Names
More detailed information about this field from each metasource.
Semanticscience Integrated Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: SIO; Semanticscience Integrated Ontology; DOI: https://doi.org/10.25504/FAIRsharing.dpkb5f; Last edited: Jan. 29, 2020, 11:43 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1.55 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SIO
SIO
metasource: Fairsharing.orgversion: FAIRsharing.org: SIO; Semanticscience Integrated Ontology; DOI: https://doi.org/10.25504/FAIRsharing.dpkb5f; Last edited: Jan. 29, 2020, 11:43 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1.55 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SIO
Names
More detailed information about this field from each metasource.
Semanticscience Integrated Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: SIO; Semanticscience Integrated Ontology; DOI: https://doi.org/10.25504/FAIRsharing.dpkb5f; Last edited: Jan. 29, 2020, 11:43 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1.55 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SIO
SIO
metasource: Fairsharing.orgversion: FAIRsharing.org: SIO; Semanticscience Integrated Ontology; DOI: https://doi.org/10.25504/FAIRsharing.dpkb5f; Last edited: Jan. 29, 2020, 11:43 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1.55 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SIO
The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.
Description
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The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.
metasource: Fairsharing.orgversion: FAIRsharing.org: SIO; Semanticscience Integrated Ontology; DOI: https://doi.org/10.25504/FAIRsharing.dpkb5f; Last edited: Jan. 29, 2020, 11:43 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1.55 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SIO
Webpage:
https://github.com/MaastrichtU-IDS/semanticscienceWebpage
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https://github.com/MaastrichtU-IDS/semanticscience
metasource: Fairsharing.orgversion: FAIRsharing.org: SIO; Semanticscience Integrated Ontology; DOI: https://doi.org/10.25504/FAIRsharing.dpkb5f; Last edited: Jan. 29, 2020, 11:43 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
http://sio.semanticscience.org
metasource: Biontology / Bioportalversion: 1.55 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SIO
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
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Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: SIO; Semanticscience Integrated Ontology; DOI: https://doi.org/10.25504/FAIRsharing.dpkb5f; Last edited: Jan. 29, 2020, 11:43 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
Licence URL
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https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: SIO; Semanticscience Integrated Ontology; DOI: https://doi.org/10.25504/FAIRsharing.dpkb5f; Last edited: Jan. 29, 2020, 11:43 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery
PMID: 24602174
metasource: Fairsharing.org
version: FAIRsharing.org: SIO; Semanticscience Integrated Ontology; DOI: https://doi.org/10.25504/FAIRsharing.dpkb5f; Last edited: Jan. 29, 2020, 11:43 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
http://sio.semanticscience.org
metasource: Biontology / Bioportal
version: 1.55 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SIO
Publications
More detailed information about this field from each metasource.
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery
PMID: 24602174
metasource: Fairsharing.org
version: FAIRsharing.org: SIO; Semanticscience Integrated Ontology; DOI: https://doi.org/10.25504/FAIRsharing.dpkb5f; Last edited: Jan. 29, 2020, 11:43 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
http://sio.semanticscience.org
metasource: Biontology / Bioportalversion: 1.55 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/SIO
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The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery
PubMed citations: 47.
47 articles citing: The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery
The AOP-DB RDF: Applying FAIR Principles to the Semantic Integration of AOP Data Using the Research Description Framework. PMID:35295213
Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data. PMID:35292119
Food Recipe Ingredient Substitution Ontology Design Pattern. PMID:35161841
Dealing with the Ambiguity of Glycan Substructure Search. PMID:35011294
Development of the International Classification of Diseases Ontology (ICDO) and its application for COVID-19 diagnostic data analysis. PMID:34663204
FORUM: Building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases. PMID:34478489
IDSM ChemWebRDF: SPARQLing small-molecule datasets. PMID:33980298
A resource to explore the discovery of rare diseases and their causative genes. PMID:33947870
An empirical meta-analysis of the life sciences linked open data on the web. PMID:33479214
The Semantic Data Dictionary - An Approach for Describing and Annotating Data. PMID:33103120
BioHackathon 2015: Semantics of data for life sciences and reproducible research. PMID:32308977
Tripal EUtils: a Tripal module to increase exchange and reuse of genome assembly metadata. PMID:31960040
The DisGeNET knowledge platform for disease genomics: 2019 update. PMID:31680165
PathoPhenoDB, linking human pathogens to their phenotypes in support of infectious disease research. PMID:31160594
DNAmod: the DNA modification database. PMID:31016417
TogoGenome/TogoStanza: modularized Semantic Web genome database. PMID:30624651
NBDC RDF portal: a comprehensive repository for semantic data in life sciences. PMID:30576482
Annotation and detection of drug effects in text for pharmacovigilance. PMID:30105604
Towards FAIRer Biological Knowledge Networks Using a Hybrid Linked Data and Graph Database Approach. PMID:30085931
A confidence predictor for logD using conformal regression and a support-vector machine. PMID:29616425
Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration. PMID:29390967
Biotea: semantics for Pubmed Central. PMID:29312824
BioSearch: a semantic search engine for Bio2RDF. PMID:29220451
Predicate Oriented Pattern Analysis for Biomedical Knowledge Discovery. PMID:28983419
Analysis and visualization of disease courses in a semantically-enabled cancer registry. PMID:28962670
Extending XNAT Platform with an Incremental Semantic Framework. PMID:28912709
Opinion: Why we need a centralized repository for isotopic data. PMID:28325883
DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants. PMID:27924018
DNA Data Bank of Japan. PMID:27924010
The health care and life sciences community profile for dataset descriptions. PMID:27602295
Knowledge Discovery from Biomedical Ontologies in Cross Domains. PMID:27548262
Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base. PMID:27433158
The Orthology Ontology: development and applications. PMID:27259657
DisGeNET-RDF: harnessing the innovative power of the Semantic Web to explore the genetic basis of diseases. PMID:27153650
OBIB-a novel ontology for biobanking. PMID:27148435
RegenBase: a knowledge base of spinal cord injury biology for translational research. PMID:27055827
Wikidata as a semantic framework for the Gene Wiki initiative. PMID:26989148
From Cues to Nudge: A Knowledge-Based Framework for Surveillance of Healthcare-Associated Infections. PMID:26537131
From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics. PMID:26154165
GFVO: the Genomic Feature and Variation Ontology. PMID:26019997
DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes. PMID:25877637
Construction of an ortholog database using the semantic web technology for integrative analysis of genomic data. PMID:25875762
Comparative analysis of knowledge representation and reasoning requirements across a range of life sciences textbooks. PMID:25785183
linkedISA: semantic representation of ISA-Tab experimental metadata. PMID:25472428
SEE: structured representation of scientific evidence in the biomedical domain using Semantic Web techniques. PMID:25093070
Standardized description of scientific evidence using the Evidence Ontology (ECO). PMID:25052702
Extending and encoding existing biological terminologies and datasets for use in the reasoned semantic web. PMID:22818710 - http://sio.semanticscience.org
Tags:
Tags
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knowledge representation
metasource: Fairsharing.org
version: FAIRsharing.org: SIO; Semanticscience Integrated Ontology; DOI: https://doi.org/10.25504/FAIRsharing.dpkb5f; Last edited: Jan. 29, 2020, 11:43 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
knowledge representation
metasource: Fairsharing.orgversion: FAIRsharing.org: SIO; Semanticscience Integrated Ontology; DOI: https://doi.org/10.25504/FAIRsharing.dpkb5f; Last edited: Jan. 29, 2020, 11:43 a.m.; Last accessed: Jan 03 2022 7:12 p.m.
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