Selectome

Names
More detailed information about this field from each metasource.

Selectome
metasource: Fairsharing.org
version: None

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:38.273817

selectome
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:38.273817

Other names: selectome

Selectome is a database of positive selection, based on a branch-site likelihood test. Release 6 of Selectome includes all gene trees from Ensembl for Primates and Glires, as well as a large set of vertebrate gene trees.

Webpage:

https://selectome.unil.ch/

Licence:

Name: Selectome Privacy Notice
URL: https://selectome.unil.ch/cgi-bin/privacy.cgi

Publications:

Publications
More detailed information about this field from each metasource.

Selectome update: quality control and computational improvements to a database of positive selection
PMID: 24225318
metasource: Fairsharing.org
version: None

metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:38.273817

Selectome: a database of positive selection
PMID: 18957445
metasource: Fairsharing.org
version: None

http://dx.doi.org/10.1093/nar/gkt1065
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Selectome update: quality control and computational improvements to a database of positive selection PubMed citations: 36.

36 articles citing: Selectome update: quality control and computational improvements to a database of positive selection

Convergent consequences of parthenogenesis on stick insect genomes. PMID:35196080
Relative model selection of evolutionary substitution models can be sensitive to multiple sequence alignment uncertainty. PMID:34844571
Comparable Number of Genes Having Experienced Positive Selection among Great Ape Species. PMID:34827995
The Evolutionary History of Vertebrate Adhesion GPCRs and Its Implication on Their Classification. PMID:34769233
Harnessing machine learning to guide phylogenetic-tree search algorithms. PMID:33790270
Extra base hits: Widespread empirical support for instantaneous multiple-nucleotide changes. PMID:33711070
Gene Duplication and Gain in the Trematode Atriophallophorus winterbourni Contributes to Adaptation to Parasitism. PMID:33484570
Directional divergence of Ep300 duplicates in teleosts and its implications. PMID:33129255
Ancient Evolutionary Origin of Intrinsically Disordered Cancer Risk Regions. PMID:32731489
Equiprobable discrete models of site-specific substitution rates underestimate the extent of rate variability. PMID:32119689
Synonymous Site-to-Site Substitution Rate Variation Dramatically Inflates False Positive Rates of Selection Analyses: Ignore at Your Own Peril. PMID:32068869
Characterizing lineage-specific evolution and the processes driving genomic diversification in chordates. PMID:32046633
Molecular footprint of Medawar's mutation accumulation process in mammalian aging. PMID:31062469
Large-Scale Comparative Analysis of Codon Models Accounting for Protein and Nucleotide Selection. PMID:30847475
Insights into the Genomics of Clownfish Adaptive Radiation: Genetic Basis of the Mutualism with Sea Anemones. PMID:30830203
Simultaneous Bayesian inference of phylogeny and molecular coevolution. PMID:30808804
Model selection may not be a mandatory step for phylogeny reconstruction. PMID:30804347
CoevDB: a database of intramolecular coevolution among protein-coding genes of the bony vertebrates. PMID:30357342
Adaptive Evolution of Animal Proteins over Development: Support for the Darwin Selection Opportunity Hypothesis of Evo-Devo. PMID:30184095
Developmental Constraints on Genome Evolution in Four Bilaterian Model Species. PMID:30137380
Genome-scale detection of positive selection in nine primates predicts human-virus evolutionary conflicts. PMID:28977405
Detection of Pathways Affected by Positive Selection in Primate Lineages Ancestral to Humans. PMID:28333345
State aggregation for fast likelihood computations in molecular evolution. PMID:28172542
A comprehensive transcriptional map of primate brain development. PMID:27409810
Extracting functional trends from whole genome duplication events using comparative genomics. PMID:27168732
Alternative splicing modulated by genetic variants demonstrates accelerated evolution regulated by highly conserved proteins. PMID:26888265
POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes. PMID:26231214
Tissue-Specific Evolution of Protein Coding Genes in Human and Mouse. PMID:26121354
Gene-wide identification of episodic selection. PMID:25701167
Less is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selection. PMID:25697341
Extensive copy-number variation of young genes across stickleback populations. PMID:25474574
Understanding the functional difference between growth arrest-specific protein 6 and protein S: an evolutionary approach. PMID:25339693
Positive selection during the evolution of the blood coagulation factors in the context of their disease-causing mutations. PMID:25158795
Uncovering adaptive evolution in the human lineage. PMID:25030307
A generalized mechanistic codon model. PMID:24958740
Patterns of positive selection in seven ant genomes. PMID:24782441
Selectome: a database of positive selection PubMed citations: 23.

23 articles citing: Selectome: a database of positive selection

Directional divergence of Ep300 duplicates in teleosts and its implications. PMID:33129255
The Impact of Protein Architecture on Adaptive Evolution. PMID:31147689
Genome-wide identification of the MADS-box transcription factor family in pear (Pyrus bretschneideri) reveals evolution and functional divergence. PMID:28924499
The Adaptive Evolution Database (TAED): A New Release of a Database of Phylogenetically Indexed Gene Families from Chordates. PMID:28795237
Inferring Rates and Length-Distributions of Indels Using Approximate Bayesian Computation. PMID:28453624
Detection of Pathways Affected by Positive Selection in Primate Lineages Ancestral to Humans. PMID:28333345
State aggregation for fast likelihood computations in molecular evolution. PMID:28172542
Parallel or convergent evolution in human population genomic data revealed by genotype networks. PMID:27484992
A comprehensive transcriptional map of primate brain development. PMID:27409810
Explore the Features of Brain-Derived Neurotrophic Factor in Mood Disorders. PMID:26091093
Extensive copy-number variation of young genes across stickleback populations. PMID:25474574
Understanding the functional difference between growth arrest-specific protein 6 and protein S: an evolutionary approach. PMID:25339693
Positive selection during the evolution of the blood coagulation factors in the context of their disease-causing mutations. PMID:25158795
Patterns of positive selection in seven ant genomes. PMID:24782441
Optimization strategies for fast detection of positive selection on phylogenetic trees. PMID:24389654
1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans. PMID:24275494
Selectome update: quality control and computational improvements to a database of positive selection. PMID:24225318
Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping. PMID:22479459
When orthologs diverge between human and mouse. PMID:21677033
Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins. PMID:21612628
PhyleasProg: a user-oriented web server for wide evolutionary analyses. PMID:21531699
Constraints and plasticity in genome and molecular-phenome evolution. PMID:20548290
Positively selected disease response orthologous gene sets in the cereals identified using Sorghum bicolor L. Moench expression profiles and comparative genomics. PMID:19506000
http://dx.doi.org/10.1093/nar/gkt1065

Tags:

Tags
More detailed information about this field from each metasource.

nucleic acid sequence alignment
metasource: Fairsharing.org
version: None

sequence alignment
metasource: Fairsharing.org
version: None

human genes and diseases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

general polymorphism databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

phylogenetics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:38.273817

nucleic acid sequence alignment sequence alignment human genes and diseases polymorphism phylogenetics

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