Selective Targets database

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Selective Targets database

metasource: Fairsharing.org
version: None

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SelTarbase

metasource: Fairsharing.org
version: None

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:37.305513

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seltarbase

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:37.305513

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Other names: SelTarbase, seltarbase

The Selective Targets database (SelTarbase ) is a curated database of public MNR mutation data in microsatellite unstable human tumors. A comprehensive database of all human coding, untranslated, non-coding RNA- and intronic MNRs (MNR_ensembl) is also included.

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Publications

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SelTarbase, a database of human mononucleotide-microsatellite mutations and their potential impact to tumorigenesis and immunology
PMID: 19820113

metasource: Fairsharing.org
version: None

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:37.305513

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http://nar.oxfordjournals.org/content/38/suppl_1/D682

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• SelTarbase, a database of human mononucleotide-microsatellite mutations and their potential impact to tumorigenesis and immunology PubMed citations: 37.

  37 articles citing: SelTarbase, a database of human mononucleotide-microsatellite mutations and their potential impact to tumorigenesis and immunology

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  Vaccines for immunoprevention of DNA mismatch repair deficient cancers. PMID:35732349

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  Microsatellite Instability Analysis (MSA) for Bladder Cancer: Past History and Future Directions. PMID:34884669

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  Profiling diverse sequence tandem repeats in colorectal cancer reveals co-occurrence of microsatellite and chromosomal instability involving Chromosome 8. PMID:34488871

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  Predicting stability of DNA bulge at mononucleotide microsatellite. PMID:34308470

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  Distinct Mutational Profile of Lynch Syndrome Colorectal Cancers Diagnosed under Regular Colonoscopy Surveillance. PMID:34206061

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  Pan-cancer analysis of somatic mutations in miRNA genes. PMID:33038763

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  The shared frameshift mutation landscape of microsatellite-unstable cancers suggests immunoediting during tumor evolution. PMID:32958755

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  (Phospho)proteomic Profiling of Microsatellite Unstable CRC Cells Reveals Alterations in Nuclear Signaling and Cholesterol Metabolism Caused by Frameshift Mutation of NMD Regulator UPF3A. PMID:32718059

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  Implications of Hereditary Origin on the Immune Phenotype of Mismatch Repair-Deficient Cancers: Systematic Literature Review. PMID:32512823

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  The Impact of Long-term Exposure to Low Levels of Inorganic Arsenic on the Hypomethylation of SEPT9 Promoter in Epithelial-Mesenchymal Transformed Colorectal Cancer Cell Lines. PMID:32215264

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  Immune Activation in Mismatch Repair-Deficient Carcinogenesis: More Than Just Mutational Rate. PMID:31383734

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  Identification of Positively and Negatively Selected Driver Gene Mutations Associated With Colorectal Cancer With Microsatellite Instability. PMID:30116770

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  Complex pattern of immune evasion in MSI colorectal cancer. PMID:29900056

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  Next generation sequencing-based emerging trends in molecular biology of gastric cancer. PMID:29511593

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  A mononucleotide repeat in PRRT2 is an important, frequent target of mismatch repair deficiency in cancer. PMID:27907910

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  Gasdermin C Is Upregulated by Inactivation of Transforming Growth Factor β Receptor Type II in the Presence of Mutated Apc, Promoting Colorectal Cancer Proliferation. PMID:27835699

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  Classification and characterization of microsatellite instability across 18 cancer types. PMID:27694933

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  Molecular approach to genetic and epigenetic pathogenesis of early-onset colorectal cancer. PMID:26798439

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  Coding Microsatellite Frameshift Mutations Accumulate in Atherosclerotic Carotid Artery Lesions: Evaluation of 26 Cases and Literature Review. PMID:26070012

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  Mismatch repair-deficient crypt foci in Lynch syndrome--molecular alterations and association with clinical parameters. PMID:25816162

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  Causes and consequences of microsatellite instability in gastric carcinogenesis. PMID:25469011

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  Association of high CD4-positive T cell infiltration with mutations in HLA class II-regulatory genes in microsatellite-unstable colorectal cancer. PMID:25445815

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  Interplay between DNA repair and inflammation, and the link to cancer. PMID:24410153

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  Mutation at intronic repeats of the ataxia-telangiectasia mutated (ATM) gene and ATM protein loss in primary gastric cancer with microsatellite instability. PMID:24324828

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  Systematic genomic identification of colorectal cancer genes delineating advanced from early clinical stage and metastasis. PMID:24308539

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  [Pathogenesis of microsatellite-unstable colorectal cancer. Evaluation of new diagnostic and therapeutic options]. PMID:24196629

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  Clinical significance of microsatellite instability in colorectal cancer. PMID:24048684

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  A versatile microsatellite instability reporter system in human cells. PMID:23861444

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  Comprehensive genome- and transcriptome-wide analyses of mutations associated with microsatellite instability in Korean gastric cancers. PMID:23737375

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  MSH3 mismatch repair protein regulates sensitivity to cytotoxic drugs and a histone deacetylase inhibitor in human colon carcinoma cells. PMID:23724141

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  Whole-genome reconstruction and mutational signatures in gastric cancer. PMID:23237666

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  Interrelationship between microsatellite instability and microRNA in gastrointestinal cancer. PMID:22719182

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  An MSI tumor specific frameshift mutation in a coding microsatellite of MSH3 encodes for HLA-A0201-restricted CD8+ cytotoxic T cell epitopes. PMID:22110587

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  Semiallogenic fusions of MSI(+) tumor cells and activated B cells induce MSI-specific T cell responses. PMID:21943054

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  Microsatellite instability in colorectal cancer: from molecular oncogenic mechanisms to clinical implications. PMID:21484480

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  Nonsense mediated decay resistant mutations are a source of expressed mutant proteins in colon cancer cell lines with microsatellite instability. PMID:21209843

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  Lack of HLA class II antigen expression in microsatellite unstable colorectal carcinomas is caused by mutations in HLA class II regulatory genes. PMID:20013806
• http://nar.oxfordjournals.org/content/38/suppl_1/D682

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curated information

metasource: Fairsharing.org
version: None

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mutation analysis

metasource: Fairsharing.org
version: None

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tumor

metasource: Fairsharing.org
version: None

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human genes and diseases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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gene-, system- or disease-specific databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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dna polymorphism

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:37.305513

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gene transcripts

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:37.305513

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genetic variation

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:37.305513

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immunoproteins, genes and antigens

metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:37.305513

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mutation analysis tumor human genes and diseases gene-, system- or disease-specific dna polymorphism gene transcripts genetic variation immunoproteins, genes and antigens