SalmoBase
Names
More detailed information about this field from each metasource.
SalmoBase
metasource: Fairsharing.org
version: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:38.837273
salmobase
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:38.837273
Names
More detailed information about this field from each metasource.
SalmoBase
metasource: Fairsharing.orgversion: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:38.837273
salmobase
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:38.837273
Names
More detailed information about this field from each metasource.
SalmoBase
metasource: Fairsharing.orgversion: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:38.837273
salmobase
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:38.837273
SalmoBase is an integrated molecular resource for Salmonid species which includes visualizations and analytic tools. The genome of the Atlantic salmon (Salmo salar) has undergone extensive restructuring since a whole genome duplication event ~80 million years ago, which creates opportunities to explore the evolutionary process of rediploidization. A public genome assembly is available and ordered into 29 chromosome files. SalmoBase includes a GBrowse interface for exploring the chromosome sequence as well as BLAST functionality and links to expression levels, gene and SNP information. Using public RNAseq data 37,000 high confidence protein coding genes have been identified, wherein almost half show splice variants.
Description
More detailed information about this field from each metasource.
SalmoBase is an integrated molecular resource for Salmonid species which includes visualizations and analytic tools. The genome of the Atlantic salmon (Salmo salar) has undergone extensive restructuring since a whole genome duplication event ~80 million years ago, which creates opportunities to explore the evolutionary process of rediploidization. A public genome assembly is available and ordered into 29 chromosome files. SalmoBase includes a GBrowse interface for exploring the chromosome sequence as well as BLAST functionality and links to expression levels, gene and SNP information. Using public RNAseq data 37,000 high confidence protein coding genes have been identified, wherein almost half show splice variants.
metasource: Fairsharing.orgversion: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Integrated molecular resource for Salmonid species.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:38.837273
Webpage:
http://salmobase.orgWebpage
More detailed information about this field from each metasource.
http://salmobase.org
metasource: Fairsharing.orgversion: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://salmonbase.org/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:38.837273
Licence:
Name: Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain DedicationLicence name
More detailed information about this field from each metasource.
Creative Commons CC0 1.0 Universal (CC0 1.0) Public Domain Dedication
metasource: Fairsharing.orgversion: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/publicdomain/zero/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
SalmoBase: an integrated molecular data resource for Salmonid species
PMID: 28651544
metasource: Fairsharing.org
version: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://dx.doi.org/10.1038/nature17164
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:38.837273
Publications
More detailed information about this field from each metasource.
SalmoBase: an integrated molecular data resource for Salmonid species
PMID: 28651544
metasource: Fairsharing.org
version: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://dx.doi.org/10.1038/nature17164
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:38.837273
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SalmoBase: an integrated molecular data resource for Salmonid species
PubMed citations: 19.
19 articles citing: SalmoBase: an integrated molecular data resource for Salmonid species
Molecular Regulation of Biosynthesis of Long Chain Polyunsaturated Fatty Acids in Atlantic Salmon. PMID:35907166
Detecting Local Adaptation between North and South European Atlantic Salmon Populations. PMID:35741456
Cytological Observation and Transcriptome Comparative Analysis of Self-Pollination and Cross-Pollination in Dendrobium Officinale. PMID:33802927
Photoperiod-dependent developmental reprogramming of the transcriptional response to seawater entry in Atlantic salmon (Salmo salar). PMID:33710311
FishDB: an integrated functional genomics database for fishes. PMID:33203359
CrustyBase: an interactive online database for crustacean transcriptomes. PMID:32928113
Low Oxygen Stress During Early Development Influences Regulation of Hypoxia-Response Genes in Farmed Atlantic Salmon (Salmo salar). PMID:32636218
Two novel fish paralogs provide insights into the Rid family of imine deaminases active in pre-empting enamine/imine metabolic damage. PMID:32576850
More Than One-to-Four via 2R: Evidence of an Independent Amphioxus Expansion and Two-Gene Ancestral Vertebrate State for MyoD-Related Myogenic Regulatory Factors (MRFs). PMID:32520990
RNA profiling identifies novel, photoperiod-history dependent markers associated with enhanced saltwater performance in juvenile Atlantic salmon. PMID:32267864
Extensive genetic differentiation between recently evolved sympatric Arctic charr morphs. PMID:31641448
SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes. PMID:31477007
Profiling the rainbow trout hepatic miRNAome under diet-induced hyperglycemia. PMID:31282806
Genomic signatures and correlates of widespread population declines in salmon. PMID:31278264
Type II Na+-phosphate Cotransporters and Phosphate Balance in Teleost Fish. PMID:30542786
Atlantic salmon (Salmo salar L.) genetics in the 21st century: taking leaps forward in aquaculture and biological understanding. PMID:30426521
Norwegian e-Infrastructure for Life Sciences (NeLS). PMID:30271575
Social status affects lipid metabolism in rainbow trout, Oncorhynchus mykiss. PMID:29561648
Differential gene expression during early development in recently evolved and sympatric Arctic charr morphs. PMID:29441236 - http://dx.doi.org/10.1038/nature17164
Tags:
Tags
More detailed information about this field from each metasource.
gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
rna sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
single nucleotide polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:38.837273
Tags
More detailed information about this field from each metasource.
gene expression
metasource: Fairsharing.orgversion: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
rna sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
single nucleotide polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: SalmoBase; SalmoBase; DOI: https://doi.org/10.25504/FAIRsharing.97kZl6; Last edited: Jan. 8, 2019, 1:26 p.m.; Last accessed: Jan 03 2022 7:05 p.m.
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:38.837273
gene expression rna sequence single nucleotide polymorphism genomics
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