PubMed Central
U.S. National Institutes of Health (NIH) free digital archive of biomedical and life sciences journal literature.
Description
More detailed information about this field from each metasource.
U.S. National Institutes of Health (NIH) free digital archive of biomedical and life sciences journal literature.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:18.067086
Webpage:
https://www.ncbi.nlm.nih.gov/pmc/Webpage
More detailed information about this field from each metasource.
https://www.ncbi.nlm.nih.gov/pmc/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:18.067086
Publications:
Publications
More detailed information about this field from each metasource.
Database resources of the National Center for Biotechnology Information
PMID: 16381840
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.067086
Publications
More detailed information about this field from each metasource.
Database resources of the National Center for Biotechnology Information
PMID: 16381840
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.067086
-
Database resources of the National Center for Biotechnology Information
PubMed citations: 200.
200 articles citing: Database resources of the National Center for Biotechnology Information
Physiological, Agronomical, and Proteomic Studies Reveal Crucial Players in Rice Nitrogen Use Efficiency under Low Nitrogen Supply. PMID:35742855
Author-sourced capture of pathway knowledge in computable form using Biofactoid. PMID:34860157
PCMDB: a curated and comprehensive resource of plant cell markers. PMID:34718712
ARGEOS: A New Bioinformatic Tool for Detailed Systematics Search in GEO and ArrayExpress. PMID:34681124
Application of Computational Methods in Understanding Mutations in Mycobacterium tuberculosis Drug Resistance. PMID:34651013
Will the chemical probes please stand up? PMID:34447939
Integrative taxonomy resolves species identities within the Macrobiotus pallarii complex (Eutardigrada: Macrobiotidae). PMID:34044886
PhaeoNet: A Holistic RNAseq-Based Portrait of Transcriptional Coordination in the Model Diatom Phaeodactylum tricornutum. PMID:33178253
Lipid Related Genes Altered in NASH Connect Inflammation in Liver Pathogenesis Progression to HCC: A Canonical Pathway. PMID:31717414
CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers. PMID:31624845
Protein interactions and consensus clustering analysis uncover insights into herpesvirus virion structure and function relationships. PMID:31199794
Characterization of indole-3-pyruvic acid pathway-mediated biosynthesis of auxin in Neurospora crassa. PMID:29420579
Preferential selection of Arginine at the lipid-water-interface of TRPV1 during vertebrate evolution correlates with its snorkeling behaviour and cholesterol interaction. PMID:29196683
Genomic and Molecular Characterization of Clinical Isolates of Enterobacteriaceae Harboring mcr-1 in Colombia, 2002 to 2016. PMID:28893788
The Plasma Proteome Is Associated with Anthropometric Status of Undernourished Nepalese School-Aged Children. PMID:28148680
Complete genome anatomy of the emerging potato pathogen Dickeya solani type strain IPO 2222T. PMID:27942352
Characterisation of the Porphyromonas gingivalis Manganese Transport Regulator Orthologue. PMID:27007570
Molecular Cloning of cpcU and Heterodimeric Bilin Lyase Activity Analysis of CpcU and CpcS for Attachment of Phycocyanobilin to Cys-82 on the β-Subunit of Phycocyanin in Arthrospira platensis FACHB314. PMID:26999083
Why individual thermo sensation and pain perception varies? Clue of disruptive mutations in TRPVs from 2504 human genome data. PMID:26962677
Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality. PMID:26757703
Expression of temperature-sensitive ion channel TRPM8 in sperm cells correlates with vertebrate evolution. PMID:26500819
Improving compound-protein interaction prediction by building up highly credible negative samples. PMID:26072486
Predicting target-ligand interactions using protein ligand-binding site and ligand substructures. PMID:25707321
Mining for viral fragments in methylation enriched sequencing data. PMID:25699076
Complete genome sequence of the fish pathogen Flavobacterium psychrophilum ATCC 49418(T.). PMID:25685258
Differences in carbon source utilisation distinguish Campylobacter jejuni from Campylobacter coli. PMID:25348335
Identification of important nodes in directed biological networks: a network motif approach. PMID:25170616
Degree-adjusted algorithm for prioritisation of candidate disease genes from gene expression and protein interactome. PMID:25014224
MOPED 2.5--an integrated multi-omics resource: multi-omics profiling expression database now includes transcriptomics data. PMID:24910945
In silico identification of genetic variants in glucocerebrosidase (GBA) gene involved in Gaucher's disease using multiple software tools. PMID:24904648
Mutations in SLC34A3/NPT2c are associated with kidney stones and nephrocalcinosis. PMID:24700880
MIPS: a calmodulin-binding protein of Gracilaria lemaneiformis under heat shock. PMID:24535704
Identification of potential vaccine candidates against Streptococcus pneumoniae by reverse vaccinology approach. PMID:24482282
Reducing the risk of false discovery enabling identification of biologically significant genome-wide methylation status using the HumanMethylation450 array. PMID:24447442
Computational methods in drug discovery. PMID:24381236
The human urine metabolome. PMID:24023812
Sporozoite proteome analysis of Cryptosporidium parvum by one-dimensional SDS-PAGE and liquid chromatography tandem mass spectrometry. PMID:23814469
Chemical informatics and the drug discovery knowledge pyramid. PMID:23782037
FlyBase: improvements to the bibliography. PMID:23125371
Molecular phylogeny of OVOL genes illustrates a conserved C2H2 zinc finger domain coupled by hypervariable unstructured regions. PMID:22737237
West Nile virus T-cell ligand sequences shared with other flaviviruses: a multitude of variant sequences as potential altered peptide ligands. PMID:22573867
Conservation of tubulin-binding sequences in TRPV1 throughout evolution. PMID:22496727
Cross-Genome Comparisons of Newly Identified Domains in Mycoplasma gallisepticum and Domain Architectures with Other Mycoplasma species. PMID:21860605
Spliceosomal intron insertions in genome compacted ray-finned fishes as evident from phylogeny of MC receptors, also supported by a few other GPCRs. PMID:21850219
MultiMSOAR 2.0: an accurate tool to identify ortholog groups among multiple genomes. PMID:21712981
Natural selection among Eurasians at genomic regions associated with HIV-1 control. PMID:21689440
The human serum metabolome. PMID:21359215
An annotated genetic map of loblolly pine based on microsatellite and cDNA markers. PMID:21269494
A systematic search for endoplasmic reticulum (ER) membrane-associated RING finger proteins identifies Nixin/ZNRF4 as a regulator of calnexin stability and ER homeostasis. PMID:21205830
Natural selection at genomic regions associated with obesity and type-2 diabetes: East Asians and sub-Saharan Africans exhibit high levels of differentiation at type-2 diabetes regions. PMID:21188420
A nutrient-sensitive interaction between Sirt1 and HNF-1α regulates Crp expression. PMID:21176092
Evolutionary history of tissue kallikreins. PMID:21072173
Identification of Small Molecule Inhibitors of Clostridium perfringens ε-Toxin Cytotoxicity Using a Cell-Based High-Throughput Screen. PMID:20721308
Identification and structural characterization of FYVE domain-containing proteins of Arabidopsis thaliana. PMID:20678208
KID--an algorithm for fast and efficient text mining used to automatically generate a database containing kinetic information of enzymes. PMID:20626859
The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences. PMID:20609256
F-BAR domain proteins: Families and function. PMID:20585502
R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases. PMID:20519200
Systematic search for putative new domain families in Mycoplasma gallisepticum genome. PMID:20384986
Sequence analysis, in silico modeling and docking studies of caffeoyl CoA-O-methyltransferase of Populus trichopora. PMID:20169383
Exit strategies for charged tRNA from GluRS. PMID:20156451
CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics. PMID:20132550
Associating genes and protein complexes with disease via network propagation. PMID:20090828
VANLO--interactive visual exploration of aligned biological networks. PMID:19821976
Disease signatures are robust across tissues and experiments. PMID:19756046
The relationship between the evolution of microRNA targets and the length of their UTRs. PMID:19751524
Genome-wide pharmacogenomic analysis of response to treatment with antipsychotics. PMID:19721433
Supervised prediction of drug-target interactions using bipartite local models. PMID:19605421
Stochastic noise in splicing machinery. PMID:19546110
Structural implication of splicing stochastics. PMID:19528068
GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists. PMID:19420064
A mouse mammary gland involution mRNA signature identifies biological pathways potentially associated with breast cancer metastasis. PMID:19408105
Connecting protein interaction data, mutations, and disease using bioinformatics. PMID:19381537
In silico investigations on functional and haplotype tag SNPs associated with congenital long QT syndromes (LQTSs). PMID:19214780
Global versus local centrality in evolution of yeast protein network. PMID:19142681
KEGG spider: interpretation of genomics data in the context of the global gene metabolic network. PMID:19094223
Genome-wide association for major depressive disorder: a possible role for the presynaptic protein piccolo. PMID:19065144
Localization of anchor loci representing five hundred annotated rice genes to wheat chromosomes using PLUG markers. PMID:19057889
Protective HLA class I alleles that restrict acute-phase CD8+ T-cell responses are associated with viral escape mutations located in highly conserved regions of human immunodeficiency virus type 1. PMID:19036810
Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases. PMID:19025584
Identification and analysis of evolutionary selection pressures acting at the molecular level in five forkhead subfamilies. PMID:18816404
A human genome-wide library of local phylogeny predictions for whole-genome inference problems. PMID:18710563
Meta-analysis of microarray studies reveals a novel hematopoietic progenitor cell signature and demonstrates feasibility of inter-platform data integration. PMID:18698424
Trans-natural antisense transcripts including noncoding RNAs in 10 species: implications for expression regulation. PMID:18653530
NEIBank: genomics and bioinformatics resources for vision research. PMID:18648525
Prediction of drug-target interaction networks from the integration of chemical and genomic spaces. PMID:18586719
Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry. PMID:18560811
A searchable database of genetic evidence for psychiatric disorders. PMID:18548508
Semantic role labeling for protein transport predicates. PMID:18547432
Epithelial-to-mesenchymal transition in early transplant tubulointerstitial damage. PMID:18480317
Differential remodeling of a T-cell transcriptome following CD8- versus CD3-induced signaling. PMID:18475290
Transcription induces strand-specific mutations at the 5' end of human genes. PMID:18463301
Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data. PMID:18463138
ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data. PMID:18460543
Clinical uses of microarrays in cancer research. PMID:18453086
Functional diversification of the toll-like receptor gene family. PMID:18415094
Overlapping genes in the human and mouse genomes. PMID:18410680
Genomewide association for schizophrenia in the CATIE study: results of stage 1. PMID:18347602
Search for the genes involved in oocyte maturation and early embryo development in the hen. PMID:18312645
A novel function for hydroxyproline oxidase in apoptosis through generation of reactive oxygen species. PMID:18287100
Evolution of protein domain promiscuity in eukaryotes. PMID:18230802
Genes and (common) pathways underlying drug addiction. PMID:18179280
HsdR subunit of the type I restriction-modification enzyme EcoR124I: biophysical characterisation and structural modelling. PMID:18164032
Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes. PMID:18086709
High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology. PMID:18021442
Inter- and intra-combinatorial regulation by transcription factors and microRNAs. PMID:17971223
Catechol-O-methyltransferase and its inhibitors in Parkinson's disease. PMID:17894650
The Edinburgh human metabolic network reconstruction and its functional analysis. PMID:17882155
Fast 3D shape screening of large chemical databases through alignment-recycling. PMID:17880744
PADB: published association database. PMID:17877839
OntologyWidget - a reusable, embeddable widget for easily locating ontology terms. PMID:17854506
Genetic variation in C57BL/6 ES cell lines and genetic instability in the Bruce4 C57BL/6 ES cell line. PMID:17828574
Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton. PMID:17727702
Modular co-evolution of metabolic networks. PMID:17723146
The Princeton Protein Orthology Database (P-POD): a comparative genomics analysis tool for biologists. PMID:17712414
Transcriptome annotation using tandem SAGE tags. PMID:17709346
Ancient intron insertion sites and palindromic genomic duplication evolutionally shapes an elementally functioning membrane protein family. PMID:17708769
Automated discovery of functional generality of human gene expression programs. PMID:17696603
Unique genes in giant viruses: regular substitution pattern and anomalously short size. PMID:17652424
Distinct gene expression profiles in peripheral blood mononuclear cells from patients infected with vaccinia virus, yellow fever 17D virus, or upper respiratory infections. PMID:17651872
Modeling insertional mutagenesis using gene length and expression in murine embryonic stem cells. PMID:17637833
Comparative genomic and protein sequence analyses of a complex system controlling bacterial chemotaxis. PMID:17628132
Relationship between insertion/deletion (indel) frequency of proteins and essentiality. PMID:17598914
Integrative analysis of the mouse embryonic transcriptome. PMID:17597930
Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome. PMID:17594509
GenMAPP 2: new features and resources for pathway analysis. PMID:17588266
Web services at the European bioinformatics institute. PMID:17576686
The ENCODEdb portal: simplified access to ENCODE Consortium data. PMID:17568011
MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals. PMID:17560377
Listeria monocytogenes surface proteins: from genome predictions to function. PMID:17554049
Hormone-mediated gene regulation and bioinformatics: learning one from the other. PMID:17534431
The emergence of alternative 3' and 5' splice site exons from constitutive exons. PMID:17530917
Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB). PMID:17525135
Widespread positive selection in synonymous sites of mammalian genes. PMID:17522087
Mutational analysis of EGFR and related signaling pathway genes in lung adenocarcinomas identifies a novel somatic kinase domain mutation in FGFR4. PMID:17487277
Evolution of the lung surfactant proteins in birds and mammals. PMID:17457583
CpG methylation is targeted to transcription units in an invertebrate genome. PMID:17420183
Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry. PMID:17389044
ImmTree: database of evolutionary relationships of genes and proteins in the human immune system. PMID:17376226
Whole genome molecular phylogeny of large dsDNA viruses using composition vector method. PMID:17359548
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PMID:17355171
Hawkeye: an interactive visual analytics tool for genome assemblies. PMID:17349036
GOTax: investigating biological processes and biochemical activities along the taxonomic tree. PMID:17346342
Identification of N-acetyltransferase 2 (NAT2) transcription start sites and quantitation of NAT2-specific mRNA in human tissues. PMID:17287389
Automated querying of genome databases. PMID:17257048
Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes. PMID:17254313
Identifying bacterial genes and endosymbiont DNA with Glimmer. PMID:17237039
The mimivirus genome encodes a mitochondrial carrier that transports dATP and dTTP. PMID:17229695
IDconverter and IDClight: conversion and annotation of gene and protein IDs. PMID:17214880
DiscoverySpace: an interactive data analysis application. PMID:17210078
hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. PMID:17207965
Towards alignment independent quantitative assessment of homology detection. PMID:17205117
HMDB: the Human Metabolome Database. PMID:17202168
BRENDA, AMENDA and FRENDA: the enzyme information system in 2007. PMID:17202167
GenBank. PMID:17202161
T1DBase: integration and presentation of complex data for type 1 diabetes research. PMID:17169983
Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes. PMID:17158152
Mouse Phenome Database (MPD). PMID:17151079
PharmGED: Pharmacogenetic Effect Database. PMID:17151074
Ensembl 2007. PMID:17148474
A novel strategy for defining haplotypes by selective depletion using restriction enzymes. PMID:17146685
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. PMID:17145712
MamPol: a database of nucleotide polymorphism in the Mammalia class. PMID:17142236
RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. PMID:17142223
CDD: a conserved domain database for interactive domain family analysis. PMID:17135202
MMDB: annotating protein sequences with Entrez's 3D-structure database. PMID:17135201
Pfarao: a web application for protein family analysis customized for cytoskeletal and motor proteins (CyMoBase). PMID:17134497
The mouse Gene Expression Database (GXD): 2007 update. PMID:17130151
EGenBio: a data management system for evolutionary genomics and biodiversity. PMID:17118150
NCBI GEO: mining tens of millions of expression profiles--database and tools update. PMID:17099226
Xanthusbase: adapting wikipedia principles to a model organism database. PMID:17090585
The Escherichia coli argW-dsdCXA genetic island is highly variable, and E. coli K1 strains commonly possess two copies of dsdCXA. PMID:17088369
CancerGenes: a gene selection resource for cancer genome projects. PMID:17088289
dbRES: a web-oriented database for annotated RNA editing sites. PMID:17088288
XML schemas for common bioinformatic data types and their application in workflow systems. PMID:17087823
Identification of human tRNA:m5C methyltransferase catalysing intron-dependent m5C formation in the first position of the anticodon of the pre-tRNA Leu (CAA). PMID:17071714
A biocurator perspective: annotation at the Research Collaboratory for Structural Bioinformatics Protein Data Bank. PMID:17069453
Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches. PMID:17068079
OriDB: a DNA replication origin database. PMID:17065467
Expoldb: expression linked polymorphism database with inbuilt tools for analysis of expression and simple repeats. PMID:17038195
Analysis of protein sequence and interaction data for candidate disease gene prediction. PMID:17020920
MicroArray Facility: a laboratory information management system with extended support for Nylon based technologies. PMID:16987406
PhenomicDB: a new cross-species genotype/phenotype resource. PMID:16982638
PhyloFacts: an online structural phylogenomic encyclopedia for protein functional and structural classification. PMID:16973001
Diverse bacterial genomes encode an operon of two genes, one of which is an unusual class-I release factor that potentially recognizes atypical mRNA signals other than normal stop codons. PMID:16970810
Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters. PMID:16916456
Microbial diversity in the deep sea and the underexplored "rare biosphere". PMID:16880384
Immunoinformatics comes of age. PMID:16846250
Taverna: a tool for building and running workflows of services. PMID:16845108
PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes. PMID:16845085
PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments. PMID:16845080
RegRNA: an integrated web server for identifying regulatory RNA motifs and elements. PMID:16845041
DOUTfinder--identification of distant domain outliers using subsignificant sequence similarity. PMID:16844996
Tools for integrated sequence-structure analysis with UCSF Chimera. PMID:16836757
Cluster analysis of protein array results via similarity of Gene Ontology annotation. PMID:16836750
The microarray data analysis process: from raw data to biological significance. PMID:16815220
PHOG: a database of supergenomes built from proteome complements. PMID:16792803
Remarkably high activities of testicular cytochrome c in destroying reactive oxygen species and in triggering apoptosis. PMID:16757556
Positive selection on the nonhomologous end-joining factor Cernunnos-XLF in the human lineage. PMID:16749933
GenBank. PMID:16381837
Tags:
Tags
More detailed information about this field from each metasource.
mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.067086
probes and primers
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.067086
biomedical science
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:18.067086
Tags
More detailed information about this field from each metasource.
mapping
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:18.067086
probes and primers
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:18.067086
biomedical science
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:18.067086
mapping probes and primers biomedical science
Need help integrating and/or managing biomedical data?