PhosSNP
A database of phosphorylation-related SNP (phosSNP) which are non-synonymous SNP (nsSNP) that affect the protein phosphorylation status. Using an in-house developed kinase-specific phosphorylation site predictor (GPS 2.0), we computationally detected that �_70% of the reported nsSNPs are potential phosSNPs.
Description
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A database of phosphorylation-related SNP (phosSNP) which are non-synonymous SNP (nsSNP) that affect the protein phosphorylation status. Using an in-house developed kinase-specific phosphorylation site predictor (GPS 2.0), we computationally detected that �_70% of the reported nsSNPs are potential phosSNPs.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:13.398454
Webpage:
http://phossnp.biocuckoo.org/Webpage
More detailed information about this field from each metasource.
http://phossnp.biocuckoo.org/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:13.398454
Publications:
Publications
More detailed information about this field from each metasource.
PhosSNP for systematic analysis of genetic polymorphisms that influence protein phosphorylation
PMID: 19995808
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:13.398454
Publications
More detailed information about this field from each metasource.
PhosSNP for systematic analysis of genetic polymorphisms that influence protein phosphorylation
PMID: 19995808
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:13.398454
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PhosSNP for systematic analysis of genetic polymorphisms that influence protein phosphorylation
PubMed citations: 35.
35 articles citing: PhosSNP for systematic analysis of genetic polymorphisms that influence protein phosphorylation
PhosVarDeep: deep-learning based prediction of phospho-variants using sequence information. PMID:35310161
Why SNP rs3755955 is associated with human bone mineral density? A molecular and cellular study in bone cells. PMID:34783964
RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis. PMID:33010174
KSP: an integrated method for predicting catalyzing kinases of phosphorylation sites in proteins. PMID:32753030
Using phosphoproteomics data to understand cellular signaling: a comprehensive guide to bioinformatics resources. PMID:32676006
Associations between potentially functional CORIN SNPs and serum corin levels in the Chinese Han population. PMID:31856714
Associations among NPPA gene polymorphisms, serum ANP levels, and hypertension in the Chinese Han population. PMID:31341238
Integrative analysis revealed potential causal genetic and epigenetic factors for multiple sclerosis. PMID:31321514
Characterization of Plasma Membrane Localization and Phosphorylation Status of Organic Anion Transporting Polypeptide (OATP) 1B1 c.521 T>C Nonsynonymous Single-Nucleotide Polymorphism. PMID:31093828
SNPs rs10224002 in PRKAG2 may disturb gene expression and consequently affect hypertension. PMID:30689184
Why SNP rs227584 is associated with human BMD and fracture risk? A molecular and cellular study in bone cells. PMID:30370607
AWESOME: a database of SNPs that affect protein post-translational modifications. PMID:30215764
m6ASNP: a tool for annotating genetic variants by m6A function. PMID:29617790
Functional annotation of Alzheimer's disease associated loci revealed by GWASs. PMID:28650998
Methods, Tools and Current Perspectives in Proteogenomics. PMID:28456751
Gender-Specific Associations between CHGB Genetic Variants and Schizophrenia in a Korean Population. PMID:28332369
Mutation-Structure-Function Relationship Based Integrated Strategy Reveals the Potential Impact of Deleterious Missense Mutations in Autophagy Related Proteins on Hepatocellular Carcinoma (HCC): A Comprehensive Informatics Approach. PMID:28085066
Impact of SNPs on Protein Phosphorylation Status in Rice (Oryza sativa L.). PMID:27845739
Association of LRRK2 R1628P variant with Parkinson's disease in Ethnic Han-Chinese and subgroup population. PMID:27812003
Prioritizing functional phosphorylation sites based on multiple feature integration. PMID:27090940
Parkinson-Related LRRK2 Mutation R1628P Enables Cdk5 Phosphorylation of LRRK2 and Upregulates Its Kinase Activity. PMID:26930193
How Intrinsic Molecular Dynamics Control Intramolecular Communication in Signal Transducers and Activators of Transcription Factor STAT5. PMID:26717567
Current strategies for mutation detection in phenotype-driven screens utilising next generation sequencing. PMID:26449678
Identification of IDUA and WNT16 Phosphorylation-Related Non-Synonymous Polymorphisms for Bone Mineral Density in Meta-Analyses of Genome-Wide Association Studies. PMID:26256109
Systematic Analysis of the Genetic Variability That Impacts SUMO Conjugation and Their Involvement in Human Diseases. PMID:26154679
A Comparative Analysis and Review of lysyl Residues Affected by Posttranslational Modifications. PMID:26085811
Detection and analysis of disease-associated single nucleotide polymorphism influencing post-translational modification. PMID:26043787
MIMP: predicting the impact of mutations on kinase-substrate phosphorylation. PMID:25938373
A phosphorylation-related variant ADD1-rs4963 modifies the risk of colorectal cancer. PMID:25816007
Biological databases for human research. PMID:25712261
A multiscale statistical mechanical framework integrates biophysical and genomic data to assemble cancer networks. PMID:25362484
Superresolution imaging reveals structural features of EB1 in microtubule plus-end tracking. PMID:25355949
AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations. PMID:24215028
SNP rs6265 regulates protein phosphorylation and osteoblast differentiation and influences BMD in humans. PMID:23712400
Bioinformatic analysis and post-translational modification crosstalk prediction of lysine acetylation. PMID:22164248
Tags:
Tags
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genetic variation
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:13.398454
dna polymorphism
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:13.398454
genotype and phenotype
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:13.398454
transcription factors and regulatory sites
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:13.398454
pathology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:34:13.398454
Tags
More detailed information about this field from each metasource.
genetic variation
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:13.398454
dna polymorphism
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:13.398454
genotype and phenotype
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:13.398454
transcription factors and regulatory sites
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:13.398454
pathology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:34:13.398454
genetic variation dna polymorphism genotype and phenotype transcription factors and regulatory sites pathology
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