PhaSepDB

PhaSepDB is a novel database that provides a collection of phase separation related proteins manually curated from publications and public database. In addition to curated proteins, PhaSepDB also provides the researchers with molecular signatures that may facilitate phase separation related proteins identification for all human proteins.

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PhaSepDB: a database of liquid-liquid phase separation related proteins
PMID: 31584089

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:12.142676

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• PhaSepDB: a database of liquid-liquid phase separation related proteins PubMed citations: 34.

  34 articles citing: PhaSepDB: a database of liquid-liquid phase separation related proteins

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  Prediction of liquid-liquid phase separating proteins using machine learning. PMID:35168563

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  Databases for intrinsically disordered proteins. PMID:35102880

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  Molecular Determinants of Selectivity in Disordered Complexes May Shed Light on Specificity in Protein Condensates. PMID:35053240

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  LLPSDB v2.0: an updated database of proteins undergoing liquid-liquid phase separation in vitro. PMID:35025997

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  Liquid-Liquid Phase Separation-Related Genes Associated with Tumor Grade and Prognosis in Hepatocellular Carcinoma: A Bioinformatic Study. PMID:34934344

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  Transcription Regulators and Membraneless Organelles Challenges to Investigate Them. PMID:34884563

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  A novel model based on liquid-liquid phase separation-Related genes correlates immune microenvironment profiles and predicts prognosis of lung squamous cell carcinoma. PMID:34799879

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  FuzDB: a new phase in understanding fuzzy interactions. PMID:34791357

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  Clustering of Aromatic Residues in Prion-like Domains Can Tune the Formation, State, and Organization of Biomolecular Condensates. PMID:34784177

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  Using quantitative reconstitution to investigate multicomponent condensates. PMID:34772789

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  Liquid-Liquid Phase Separation: Unraveling the Enigma of Biomolecular Condensates in Microbial Cells. PMID:34759902

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  Gain-of-function cardiomyopathic mutations in RBM20 rewire splicing regulation and re-distribute ribonucleoprotein granules within processing bodies. PMID:34732726

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  RNAPhaSep: a resource of RNAs undergoing phase separation. PMID:34718740

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  RPS: a comprehensive database of RNAs involved in liquid-liquid phase separation. PMID:34718734

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  Systematic Analysis of the Impact of R-Methylation on RBPs-RNA Interactions: A Proteomic Approach. PMID:34557518

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  Targeted modulation of protein liquid-liquid phase separation by evolution of amino-acid sequence. PMID:34428231

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  Quantifying the phase separation property of chromatin-associated proteins under physiological conditions using an anti-1,6-hexanediol index. PMID:34404448

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  Insight into membraneless organelles and their associated proteins: Drivers, Clients and Regulators. PMID:34377363

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  A Liquid-Liquid Phase Separation-Related Gene Signature as Prognostic Biomarker for Epithelial Ovarian Cancer. PMID:34168991

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  New Faces of old Friends: Emerging new Roles of RNA-Binding Proteins in the DNA Double-Strand Break Response. PMID:34026839

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  PhosIDP: a web tool to visualize the location of phosphorylation sites in disordered regions. PMID:33976270

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  Learning the molecular grammar of protein condensates from sequence determinants and embeddings. PMID:33827920

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  Integration of Data from Liquid-Liquid Phase Separation Databases Highlights Concentration and Dosage Sensitivity of LLPS Drivers. PMID:33809541

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  USP42 drives nuclear speckle mRNA splicing via directing dynamic phase separation to promote tumorigenesis. PMID:33731873

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  Interchromosomal Contacts of rDNA Clusters in Three Human Cell Lines Are Associated with Silencing of Genes Controlling Morphogenesis. PMID:33689069

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  Computational Screening of Phase-separating Proteins. PMID:33610793

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  Phase separation of DNA: From past to present. PMID:33582138

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  Single molecule microscopy reveals key physical features of repair foci in living cells. PMID:33543712

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  Computational resources for identifying and describing proteins driving liquid-liquid phase separation. PMID:33517364

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  Widespread occurrence of the droplet state of proteins in the human proteome. PMID:33318217

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  MobiDB: intrinsically disordered proteins in 2021. PMID:33237329

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  Protein Databases Related to Liquid-Liquid Phase Separation. PMID:32947964

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  The 27th annual Nucleic Acids Research database issue and molecular biology database collection. PMID:31906604

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  The Role of Post-Translational Modifications in the Phase Transitions of Intrinsically Disordered Proteins. PMID:31694155

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cell biology

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:12.142676

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nucleic acids

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:12.142676

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proteins

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:12.142676

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literature and language

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:12.142676

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proteomics

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:12.142676

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cell biology nucleic acids proteins literature and language proteomics