FAIRsharing.z1czxj; Last edited: April 26, 2021, 3:11 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

PeroxiBase peroxidase family database
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:31.975724

peroxibase
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:31.975724

Other names: PeroxiBase peroxidase family database, peroxibase

Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series of bioinformatics tools and facilities suitable for analysing these sequences.

Webpage:

http://peroxibase.toulouse.inra.fr/

Licence:

Name: PeroxiBase Attribution required
URL: https://peroxibase.toulouse.inra.fr/infos/publications

Publications:

Publications
More detailed information about this field from each metasource.

PeroxiBase: a database for large-scale evolutionary analysis of peroxidases
PMID: 23180785
metasource: Fairsharing.org
version: FAIRsharing.org: PeroxiBase; PeroxiBase; DOI: https://doi.org/10.25504/FAIRsharing.z1czxj; Last edited: April 26, 2021, 3:11 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:31.975724

PeroxiBase: a powerful tool to collect and analyse peroxidase sequences from Viridiplantae
PMID: 19112168
metasource: Fairsharing.org
version: FAIRsharing.org: PeroxiBase; PeroxiBase; DOI: https://doi.org/10.25504/FAIRsharing.z1czxj; Last edited: April 26, 2021, 3:11 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

http://dx.doi.org/10.1093/nar/gks1083
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

PeroxiBase: a database for large-scale evolutionary analysis of peroxidases PubMed citations: 51.

51 articles citing: PeroxiBase: a database for large-scale evolutionary analysis of peroxidases

Genome Analysis of the Broad Host Range Necrotroph Nalanthamala psidii Highlights Genes Associated With Virulence. PMID:35283890
Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete Clavariopsis aquatica. PMID:34682274
Efficient Degradation of Zearalenone by Dye-Decolorizing Peroxidase from Streptomyces thermocarboxydus Combining Catalytic Properties of Manganese Peroxidase and Laccase. PMID:34564606
Ectomycorrhizal access to organic nitrogen mediates CO2 fertilization response in a dominant temperate tree. PMID:34518539
Characterization of Class V DyP-Type Peroxidase SaDyP1 from Streptomyces avermitilis and Evaluation of SaDyPs Expression in Mycelium. PMID:34445389
Changes in the Cell Wall Proteome of Leaves in Response to High Temperature Stress in Brachypodium distachyon. PMID:34201710
Revealing two important tryptophan residues with completely different roles in a dye-decolorizing peroxidase from Irpex lacteus F17. PMID:34059116
Extensins: Self-Assembly, Crosslinking, and the Role of Peroxidases. PMID:34054905
Mutational and structural analysis of an ancestral fungal dye-decolorizing peroxidase. PMID:33369202
CsPrx25, a class III peroxidase in Citrus sinensis, confers resistance to citrus bacterial canker through the maintenance of ROS homeostasis and cell wall lignification. PMID:33328465
Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta. PMID:33028976
Serial Femtosecond Zero Dose Crystallography Captures a Water-Free Distal Heme Site in a Dye-Decolorising Peroxidase to Reveal a Catalytic Role for an Arginine in FeIV =O Formation. PMID:32780931
Modulation of Aleurone Peroxidases in Kernels of Insect-Resistant Maize (Zea mays L.; Pob84-C3R) After Mechanical and Insect Damage. PMID:32595673
CsWAKL08, a pathogen-induced wall-associated receptor-like kinase in sweet orange, confers resistance to citrus bacterial canker via ROS control and JA signaling. PMID:32257228
Global Evolutionary Analysis of 11 Gene Families Part of Reactive Oxygen Species (ROS) Gene Network in Four Eucalyptus Species. PMID:32245199
Genomewide analysis of the CIII peroxidase family in sweet orange (Citrus sinensis) and expression profiles induced by Xanthomonas citri subsp. citri and hormones. PMID:32089529
In silico definition of new ligninolytic peroxidase sub-classes in fungi and putative relation to fungal life style. PMID:31889110
The Dynamics of the Cell Wall Proteome of Developing Alfalfa Stems. PMID:31430995
Lacking catalase, a protistan parasite draws on its photosynthetic ancestry to complete an antioxidant repertoire with ascorbate peroxidase. PMID:31324143
Accelerated directed evolution of dye-decolorizing peroxidase using a bacterial extracellular protein secretion system (BENNY). PMID:31231605
RedoxiBase: A database for ROS homeostasis regulated proteins. PMID:31228650
Cloning, characterization and paper pulp applications of a newly isolated DyP type peroxidase from Rhodococcus sp. T1. PMID:30474775
Membrane-Bound Class III Peroxidases: Unexpected Enzymes with Exciting Functions. PMID:30248965
Tyrosine substitution of a conserved active-site histidine residue activates Plasmodium falciparum peroxiredoxin 6. PMID:30056630
A novel bacterial class V dye-decolourizing peroxidase from the extremophile Deinococcus radiodurans: cloning, expression optimization, purification, crystallization, initial characterization and X-ray diffraction analysis. PMID:29969105
Intraspecific comparative genomics of isolates of the Norway spruce pathogen (Heterobasidion parviporum) and identification of its potential virulence factors. PMID:29580224
Anthropogenic N Deposition Alters the Composition of Expressed Class II Fungal Peroxidases. PMID:29453258
Coproheme decarboxylases - Phylogenetic prediction versus biochemical experiments. PMID:29331688
Comparative Ecology of Capsular Exophiala Species Causing Disseminated Infection in Humans. PMID:29312215
Fungal Hybrid B heme peroxidases - unique fusions of a heme peroxidase domain with a carbohydrate-binding domain. PMID:28839281
The Trichodesmium consortium: conserved heterotrophic co-occurrence and genomic signatures of potential interactions. PMID:28440800
Protein Bioinformatics Databases and Resources. PMID:28150231
Characterization of Class III Peroxidases from Switchgrass. PMID:27879392
Cell wall dynamics during apple development and storage involves hemicellulose modifications and related expressed genes. PMID:27630120
Complementarity of medium-throughput in situ RNA hybridization and tissue-specific transcriptomics: case study of Arabidopsis seed development kinetics. PMID:27095274
Anthropogenic N Deposition Slows Decay by Favoring Bacterial Metabolism: Insights from Metagenomic Analyses. PMID:26973633
Phi Class of Glutathione S-transferase Gene Superfamily Widely Exists in Nonplant Taxonomic Groups. PMID:26884677
Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors. PMID:26527297
Identification of B6T173 (ZmPrx35) as the prevailing peroxidase in highly insect-resistant maize (Zea mays, p84C3) kernels by activity-directed purification. PMID:26379694
Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends. PMID:26275154
Analysis of Cell Wall-Related Genes in Organs of Medicago sativa L. under Different Abiotic Stresses. PMID:26193255
Transcriptomic characterization of the enzymatic antioxidants FeSOD, MnSOD, APX and KatG in the dinoflagellate genus Symbiodinium. PMID:25887897
Explosive tandem and segmental duplications of multigenic families in Eucalyptus grandis. PMID:25769696
Evolution of alternative biosynthetic pathways for vitamin C following plastid acquisition in photosynthetic eukaryotes. PMID:25768426
WallProtDB, a database resource for plant cell wall proteomics. PMID:25614757
PCR primers to study the diversity of expressed fungal genes encoding lignocellulolytic enzymes in soils using high-throughput sequencing. PMID:25545363
Compositional profile of α / β-hydrolase fold proteins in mangrove soil metagenomes: prevalence of epoxide hydrolases and haloalkane dehalogenases in oil-contaminated sites. PMID:25171437
PlantCAZyme: a database for plant carbohydrate-active enzymes. PMID:25125445
Degradation of polycyclic aromatic hydrocarbons in soil by a tolerant strain of Trichoderma asperellum. PMID:25106516
fPoxDB: fungal peroxidase database for comparative genomics. PMID:24885079
Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries. PMID:24069019
PeroxiBase: a powerful tool to collect and analyse peroxidase sequences from Viridiplantae PubMed citations: 11.

11 articles citing: PeroxiBase: a powerful tool to collect and analyse peroxidase sequences from Viridiplantae

Overexpression of ZePrx in Nicotiana tabacum Affects Lignin Biosynthesis Without Altering Redox Homeostasis. PMID:32676088
A Cell Wall Proteome and Targeted Cell Wall Analyses Provide Novel Information on Hemicellulose Metabolism in Flax. PMID:28706005
Mycothiol/mycoredoxin 1-dependent reduction of the peroxiredoxin AhpE from Mycobacterium tuberculosis. PMID:24379404
Transcription profile of soybean-root-knot nematode interaction reveals a key role of phythormones in the resistance reaction. PMID:23663436
Plant responses to stresses: Role of ascorbate peroxidase in the antioxidant protection. PMID:23412747
Proteomic analysis of cell walls of two developmental stages of alfalfa stems. PMID:23248635
ConoDictor: a tool for prediction of conopeptide superfamilies. PMID:22661581
Calcium promotes activity and confers heat stability on plant peroxidases. PMID:22580695
The apoplastic oxidative burst peroxidase in Arabidopsis is a major component of pattern-triggered immunity. PMID:22247251
Ectopic overexpression of vacuolar and apoplastic Catharanthus roseus peroxidases confers differential tolerance to salt and dehydration stress in transgenic tobacco. PMID:21643888
Comparison of the chloroplast peroxidase system in the chlorophyte Chlamydomonas reinhardtii, the bryophyte Physcomitrella patens, the lycophyte Selaginella moellendorffii and the seed plant Arabidopsis thaliana. PMID:20584316
http://dx.doi.org/10.1093/nar/gks1083

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More detailed information about this field from each metasource.

biological regulation
metasource: Fairsharing.org
version: FAIRsharing.org: PeroxiBase; PeroxiBase; DOI: https://doi.org/10.25504/FAIRsharing.z1czxj; Last edited: April 26, 2021, 3:11 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

enzyme
metasource: Fairsharing.org
version: FAIRsharing.org: PeroxiBase; PeroxiBase; DOI: https://doi.org/10.25504/FAIRsharing.z1czxj; Last edited: April 26, 2021, 3:11 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

protein
metasource: Fairsharing.org
version: FAIRsharing.org: PeroxiBase; PeroxiBase; DOI: https://doi.org/10.25504/FAIRsharing.z1czxj; Last edited: April 26, 2021, 3:11 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

sequence annotation
metasource: Fairsharing.org
version: FAIRsharing.org: PeroxiBase; PeroxiBase; DOI: https://doi.org/10.25504/FAIRsharing.z1czxj; Last edited: April 26, 2021, 3:11 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

region
metasource: Fairsharing.org
version: FAIRsharing.org: PeroxiBase; PeroxiBase; DOI: https://doi.org/10.25504/FAIRsharing.z1czxj; Last edited: April 26, 2021, 3:11 p.m.; Last accessed: Jan 03 2022 7:09 p.m.

protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

databases of individual protein families
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

gene and protein families
metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:31.975724

biological regulation enzyme protein sequence annotation region protein sequence protein family gene and protein families

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