PLAZA
PLAZA is a platform for comparative, evolutionary, and functional genomics. The platform consists of multiple instances, where each instance contains additional genomes, improved genome annotations, new software tools, etc.
Description
More detailed information about this field from each metasource.
PLAZA is a platform for comparative, evolutionary, and functional genomics. The platform consists of multiple instances, where each instance contains additional genomes, improved genome annotations, new software tools, etc.
metasource: Fairsharing.orgversion: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Comparative genomics of monocot and dicot plants
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
https://bioinformatics.psb.ugent.be/plaza/Webpage
More detailed information about this field from each metasource.
https://bioinformatics.psb.ugent.be/plaza/
metasource: Fairsharing.orgversion: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://bioinformatics.psb.ugent.be/plaza/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Licence:
Name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by-nc-sa/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
PLAZA 3.0: an access point for plant comparative genomics
PMID: 25324309
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics
PMID: 29069403
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Dissecting plant genomes with the PLAZA comparative genomics platform
PMID: 22198273
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
PLAZA: a comparative genomics resource to study gene and genome evolution in plants
PMID: 20040540
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://dx.doi.org/10.1093/nar/gku986
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
PLAZA 3.0: an access point for plant comparative genomics
PMID: 25324309
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics
PMID: 29069403
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
Dissecting plant genomes with the PLAZA comparative genomics platform
PMID: 22198273
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
PLAZA: a comparative genomics resource to study gene and genome evolution in plants
PMID: 20040540
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
http://dx.doi.org/10.1093/nar/gku986
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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PLAZA 3.0: an access point for plant comparative genomics
PubMed citations: 154.
154 articles citing: PLAZA 3.0: an access point for plant comparative genomics
Chromosome-scale assembly and annotation of the perennial ryegrass genome. PMID:35831814
A conformational switch in the SCF-D3/MAX2 ubiquitin ligase facilitates strigolactone signalling. PMID:35484202
Comparative analysis of differential gene expression indicates divergence in ontogenetic strategies of leaves in two conifer genera. PMID:35222971
Integration of genome-wide association studies and gene coexpression networks unveils promising soybean resistance genes against five common fungal pathogens. PMID:34961779
Evolutionary analysis of angiosperm dehydrin gene family reveals three orthologues groups associated to specific protein domains. PMID:34903751
Transcriptome analysis of Rafflesia cantleyi flower stages reveals insights into the regulation of senescence. PMID:34880337
SAMBA controls cell division rate during maize development. PMID:34791456
The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests. PMID:34620991
RNA Sequencing Analyses for Deciphering Potato Molecular Responses. PMID:34448155
In silico characterization of putative gene homologues involved in somatic embryogenesis suggests that some conifer species may lack LEC2, one of the key regulators of initiation of the process. PMID:34039265
Diversified amino acid-mediated allosteric regulation of phosphoglycerate dehydrogenase for serine biosynthesis in land plants. PMID:34032263
Construction of a reference transcriptome for the analysis of male sterility in sugi (Cryptomeria japonica D. Don) focusing on MALE STERILITY 1 (MS1). PMID:33630910
Mining Grapevine Downy Mildew Susceptibility Genes: A Resource for Genomics-Based Breeding and Tailored Gene Editing. PMID:33525704
Candidate regulators and target genes of drought stress in needles and roots of Norway spruce. PMID:33416078
Using single-plant-omics in the field to link maize genes to functions and phenotypes. PMID:33346944
Overexpression of AtAHL20 causes delayed flowering in Arabidopsis via repression of FT expression. PMID:33308168
Independent Recruitment of Duplicated β-Subunit-Coding NAD-ME Genes Aided the Evolution of C4 Photosynthesis in Cleomaceae. PMID:33123181
Role of AT1G72910, AT1G72940, and ADR1-LIKE 2 in Plant Immunity under Nonsense-Mediated mRNA Decay-Compromised Conditions at Low Temperatures. PMID:33121126
Molecular insights into the compatible and incompatible interactions between sugar beet and the beet cyst nematode. PMID:33092522
Two splice variants of the DsMEK1 mitogen-activated protein kinase kinase (MAPKK) are involved in salt stress regulation in Dunaliella salina in different ways. PMID:32843896
Coordination between GROWTH-REGULATING FACTOR1 and GRF-INTERACTING FACTOR1 plays a key role in regulating leaf growth in rice. PMID:32384927
275 years of forestry meets genomics in Pinus sylvestris. PMID:31988655
Evolutionary conservation of the intrinsic disorder-based Radical-Induced Cell Death1 hub interactome. PMID:31831797
Stress-induced changes in the expression of antioxidant system genes for rice (Oryza sativa L.) and bread wheat (Triticum aestivum L.). PMID:31803533
The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants. PMID:31774499
From laboratory to field: yield stability and shade avoidance genes are massively differentially expressed in the field. PMID:31587443
A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae. PMID:31579586
Analysis of Orthologous SECONDARY WALL-ASSOCIATED NAC DOMAIN1 (SND1) Promotor Activity in Herbaceous and Woody Angiosperms. PMID:31540430
The Evolution of Gene Duplicates in Angiosperms and the Impact of Protein-Protein Interactions and the Mechanism of Duplication. PMID:31364708
Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth. PMID:31361386
Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment. PMID:31293610
1-Aminocyclopropane-1-Carboxylic Acid Oxidase (ACO): The Enzyme That Makes the Plant Hormone Ethylene. PMID:31191592
Loss of Wood Formation Genes in Monocot Genomes. PMID:31173081
Comparing time series transcriptome data between plants using a network module finding algorithm. PMID:31164912
UVSSA, UBP12, and RDO2/TFIIS Contribute to Arabidopsis UV Tolerance. PMID:31105721
Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes. PMID:31088345
Identification of a role for an E6-like 1 gene in early pollen-stigma interactions in Arabidopsis thaliana. PMID:31069543
Rapid functional divergence after small-scale gene duplication in grasses. PMID:31046675
Identification of genes preferentially expressed in wild strawberry receptacle fruit and demonstration of their promoter activities. PMID:31044078
Genome-wide identification, expression, and interaction analysis for ovate family proteins in peach. PMID:31028569
NEP-TC a rRNA Methyltransferase Involved on Somatic Embryogenesis of Tamarillo (Solanum betaceum Cav.). PMID:31024602
Tomato fruit ripening factor NOR controls leaf senescence. PMID:31002305
Unravelling the genetic basis of Fusarium seedling rot resistance in the MAGIC maize population: novel targets for breeding. PMID:30952942
Neofunctionalization of Mitochondrial Proteins and Incorporation into Signaling Networks in Plants. PMID:30938771
Variation of gene expression in plants is influenced by gene architecture and structural properties of promoters. PMID:30908494
In-depth transcriptome characterization uncovers distinct gene family expansions for Cupressus gigantea important to this long-lived species' adaptability to environmental cues. PMID:30866823
Appropriate Thiamin Pyrophosphate Levels Are Required for Acclimation to Changes in Photoperiod. PMID:30837347
Evolutionary history and structure of nuclear matrix constituent proteins, the plant analogues of lamins. PMID:30828723
The evolution of gene regulatory networks controlling Arabidopsis thaliana L. trichome development. PMID:30813891
Messages From the Past: New Insights in Plant Lectin Evolution. PMID:30761173
Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA. PMID:30744646
Multilevel comparative bioinformatics to investigate evolutionary relationships and specificities in gene annotations: an example for tomato and grapevine. PMID:30497367
Multi-tissue integration of transcriptomic and specialized metabolite profiling provides tools for assessing the common bean (Phaseolus vulgaris) metabolome. PMID:30480348
Expansion and Functional Divergence of the SHORT VEGETATIVE PHASE (SVP) Genes in Eudicots. PMID:30364940
Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding. PMID:30353370
Resurrected Protein Interaction Networks Reveal the Innovation Potential of Ancient Whole-Genome Duplication. PMID:30333148
Overcoming challenges in variant calling: exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne). PMID:30325414
Genome-wide analyses of genes encoding FK506-binding proteins reveal their involvement in abiotic stress responses in apple. PMID:30253753
Draft genome sequence of wild Prunus yedoensis reveals massive inter-specific hybridization between sympatric flowering cherries. PMID:30180884
Genome-Wide Analysis and Cloning of the Apple Stress-Associated Protein Gene Family Reveals MdSAP15, Which Confers Tolerance to Drought and Osmotic Stresses in Transgenic Arabidopsis. PMID:30134640
Genome Analyses of the Microalga Picochlorum Provide Insights into the Evolution of Thermotolerance in the Green Lineage. PMID:30113623
Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave. PMID:30081833
Genome sequence of Jatropha curcas L., a non-edible biodiesel plant, provides a resource to improve seed-related traits. PMID:30059608
Arabidopsis thaliana SPF1 and SPF2 are nuclear-located ULP2-like SUMO proteases that act downstream of SIZ1 in plant development. PMID:30053161
Prioritization of Candidate Genes in QTL Regions for Physiological and Biochemical Traits Underlying Drought Response in Barley (Hordeum vulgare L.). PMID:29946328
Comparative analysis of plant MKK gene family reveals novel expansion mechanism of the members and sheds new light on functional conservation. PMID:29843611
Genomic prediction of crown rust resistance in Lolium perenne. PMID:29843601
The effects of repeated whole genome duplication events on the evolution of cytokinin signaling pathway. PMID:29843594
The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. PMID:29760199
Classification of Complete Proteomes of Different Organisms and Protein Sets Based on Their Protein Distributions in Terms of Some Key Attributes of Proteins. PMID:29686995
GSyellow, a Multifaceted Tag for Functional Protein Analysis in Monocot and Dicot Plants. PMID:29678859
Systematic analysis and comparison of the PHD-Finger gene family in Chinese pear (Pyrus bretschneideri) and its role in fruit development. PMID:29675811
Reduced Anthocyanins in Petioles codes for a GST anthocyanin transporter that is essential for the foliage and fruit coloration in strawberry. PMID:29538703
Plant Deubiquitinases and Their Role in the Control of Gene Expression Through Modification of Histones. PMID:29387079
No Time to Waste: Transcriptome Study Reveals that Drought Tolerance in Barley May Be Attributed to Stressed-Like Expression Patterns that Exist before the Occurrence of Stress. PMID:29375595
FveRGA1, encoding a DELLA protein, negatively regulates runner production in Fragaria vesca. PMID:29288326
TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information. PMID:29272447
Temporal Proteomics of Inducible RNAi Lines of Clp Protease Subunits Identifies Putative Protease Substrates. PMID:29229697
Conservation of Nonsense-Mediated mRNA Decay Complex Components Throughout Eukaryotic Evolution. PMID:29192227
PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes. PMID:29156057
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces. PMID:29106550
PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics. PMID:29069403
Reciprocally Retained Genes in the Angiosperm Lineage Show the Hallmarks of Dosage Balance Sensitivity. PMID:29061868
qPrimerDB: a thermodynamics-based gene-specific qPCR primer database for 147 organisms. PMID:28977518
Gearing up to handle the mosaic nature of life in the quest for orthologs. PMID:28968857
A mutation in the melon Vacuolar Protein Sorting 41prevents systemic infection of Cucumber mosaic virus. PMID:28874719
Defense-Related Transcriptional Reprogramming in Vitamin E-Deficient Arabidopsis Mutants Exposed to Contrasting Phosphate Availability. PMID:28848594
A deletion affecting an LRR-RLK gene co-segregates with the fruit flat shape trait in peach. PMID:28751691
The reduction in maize leaf growth under mild drought affects the transition between cell division and cell expansion and cannot be restored by elevated gibberellic acid levels. PMID:28730636
NAC transcription factor JUNGBRUNNEN1 enhances drought tolerance in tomato. PMID:28640975
Structure-seq2: sensitive and accurate genome-wide profiling of RNA structure in vivo. PMID:28637286
Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. PMID:28630437
Mutation in HvCBP20 (Cap Binding Protein 20) Adapts Barley to Drought Stress at Phenotypic and Transcriptomic Levels. PMID:28626467
CottonFGD: an integrated functional genomics database for cotton. PMID:28595571
Comparative Study of Lectin Domains in Model Species: New Insights into Evolutionary Dynamics. PMID:28587095
Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa). PMID:28560587
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update. PMID:28472432
Single-Copy Genes as Molecular Markers for Phylogenomic Studies in Seed Plants. PMID:28460034
Concerted Divergence after Gene Duplication in Polycomb Repressive Complexes. PMID:28455403
Evidence for a Strong Correlation Between Transcription Factor Protein Disorder and Organismic Complexity. PMID:28430951
Coordination of Meristem Doming and the Floral Transition by Late Termination, a Kelch Repeat Protein. PMID:28389586
Proteome Profiling of Wheat Shoots from Different Cultivars. PMID:28348574
F-Box Protein FBX92 Affects Leaf Size in Arabidopsis thaliana. PMID:28340173
Protein interaction evolution from promiscuity to specificity with reduced flexibility in an increasingly complex network. PMID:28337996
Contrasting Rates of Molecular Evolution and Patterns of Selection among Gymnosperms and Flowering Plants. PMID:28333233
Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. PMID:28326087
Computational Tools for Genomic Studies in Plants. PMID:28217007
NorWood: a gene expression resource for evo-devo studies of conifer wood development. PMID:28186632
Variability among Cucurbitaceae species (melon, cucumber and watermelon) in a genomic region containing a cluster of NBS-LRR genes. PMID:28178932
The ancient CYP716 family is a major contributor to the diversification of eudicot triterpenoid biosynthesis. PMID:28165039
De novo transcriptome assemblies of four accessions of the metal hyperaccumulator plant Noccaea caerulescens. PMID:28140388
Plant genome and transcriptome annotations: from misconceptions to simple solutions. PMID:28062412
Both mechanism and age of duplications contribute to biased gene retention patterns in plants. PMID:28061859
The sweet cherry (Prunus avium) FLOWERING LOCUS T gene is expressed during floral bud determination and can promote flowering in a winter-annual Arabidopsis accession. PMID:27878597
Control of seed dormancy in Arabidopsis by a cis-acting noncoding antisense transcript. PMID:27856735
Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana). PMID:27799338
Resequencing of Capsicum annuum parental lines (YCM334 and Taean) for the genetic analysis of bacterial wilt resistance. PMID:27793102
Turning rice meiosis into mitosis. PMID:27767093
PIECE 2.0: an update for the plant gene structure comparison and evolution database. PMID:27742820
Leaf Growth Response to Mild Drought: Natural Variation in Arabidopsis Sheds Light on Trait Architecture. PMID:27729396
Characterization of the LBD gene family in Brachypodium: a phylogenetic and transcriptional study. PMID:27686461
Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development. PMID:27660483
MYB107 and MYB9 Homologs Regulate Suberin Deposition in Angiosperms. PMID:27604696
Highlighting the Need for Systems-Level Experimental Characterization of Plant Metabolic Enzymes. PMID:27516767
Markers associated with heading and aftermath heading in perennial ryegrass full-sib families. PMID:27422157
SorghumFDB: sorghum functional genomics database with multidimensional network analysis. PMID:27352859
SUPPRESSOR OF PHYTOCHROME B4-#3 Represses Genes Associated with Auxin Signaling to Modulate Hypocotyl Growth. PMID:27342309
A comprehensive view of the web-resources related to sericulture. PMID:27307138
A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants. PMID:27261064
Lack of GLYCOLATE OXIDASE1, but Not GLYCOLATE OXIDASE2, Attenuates the Photorespiratory Phenotype of CATALASE2-Deficient Arabidopsis. PMID:27225899
The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PMID:27128442
Learning from Co-expression Networks: Possibilities and Challenges. PMID:27092161
VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity. PMID:27006949
CoExpNetViz: Comparative Co-Expression Networks Construction and Visualization Tool. PMID:26779228
It's Time for Some "Site"-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana. PMID:26744219
Water-deficiency conditions differently modulate the methylome of roots and leaves in barley (Hordeum vulgare L.). PMID:26739862
Bioinformatic landscapes for plant transcription factor system research. PMID:26719053
Kresoxim-methyl primes Medicago truncatula plants against abiotic stress factors via altered reactive oxygen and nitrogen species signalling leading to downstream transcriptional and metabolic readjustment. PMID:26712823
Transcriptome analysis reveals the role of the root hairs as environmental sensors to maintain plant functions under water-deficiency conditions. PMID:26585228
Information Commons for Rice (IC4R). PMID:26519466
Multilocus Sex Determination Revealed in Two Populations of Gynodioecious Wild Strawberry, Fragaria vesca subsp. bracteata. PMID:26483011
A Conserved Core of Programmed Cell Death Indicator Genes Discriminates Developmentally and Environmentally Induced Programmed Cell Death in Plants. PMID:26438786
Evolution of DNA-Binding Sites of a Floral Master Regulatory Transcription Factor. PMID:26429922
Accelerated rates of protein evolution in barley grain and pistil biased genes might be legacy of domestication. PMID:26362289
Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population. PMID:26357925
Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays. PMID:26357913
The Identification of Maize and Arabidopsis Type I FLAVONE SYNTHASEs Links Flavones with Hormones and Biotic Interactions. PMID:26269546
Comprehensive Evolutionary and Expression Analysis of FCS-Like Zinc finger Gene Family Yields Insights into Their Origin, Expansion and Divergence. PMID:26252898
A Repressor Protein Complex Regulates Leaf Growth in Arabidopsis. PMID:26232487
PlantOrDB: a genome-wide ortholog database for land plants and green algae. PMID:26112452
Overexpression of the Arabidopsis thaliana signalling peptide TAXIMIN1 affects lateral organ development. PMID:26071531
Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf. PMID:26036253
Nitrate sensing by the maize root apex transition zone: a merged transcriptomic and proteomic survey. PMID:25911739
ARACINs, Brassicaceae-specific peptides exhibiting antifungal activities against necrotrophic pathogens in Arabidopsis. PMID:25593351 -
PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics
PubMed citations: 148.
148 articles citing: PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics
R2R3-MYBs in Durum Wheat: Genome-Wide Identification, Poaceae-Specific Clusters, Expression, and Regulatory Dynamics Under Abiotic Stresses. PMID:35795353
The evolution of multi-gene families and metabolic pathways in the evening primroses (Oenothera: Onagraceae): A comparative transcriptomics approach. PMID:35749399
Regulation of Phenolic Compound Production by Light Varying in Spectral Quality and Total Irradiance. PMID:35742975
Understanding the Relationship between Water Availability and Biosilica Accumulation in Selected C4 Crop Leaves: An Experimental Approach. PMID:35448747
Identification and analysis of sucrose synthase gene family associated with polysaccharide biosynthesis in Dendrobium catenatum by transcriptomic analysis. PMID:35402092
High expression of the MADS-box gene VRT2 increases the number of rudimentary basal spikelets in wheat. PMID:35377414
Impacts of the Biocontrol Strain Pseudomonas simiae PICF7 on the Banana Holobiont: Alteration of Root Microbial Co-occurrence Networks and Effect on Host Defense Responses. PMID:35242117
Phylogeny and evolution of plant Phytochrome Interacting Factors (PIFs) gene family and functional analyses of PIFs in Brachypodium distachyon. PMID:35218399
A Chromosome-Level Genome Assembly of the European Beech (Fagus sylvatica) Reveals Anomalies for Organelle DNA Integration, Repeat Content and Distribution of SNPs. PMID:35211148
Multi-omics data integration reveals link between epigenetic modifications and gene expression in sugar beet (Beta vulgaris subsp. vulgaris) in response to cold. PMID:35176993
Regulation of ammonium acquisition and use in Oryza longistaminata ramets under nitrogen source heterogeneity. PMID:35134987
Functional and comparative genomics reveals conserved noncoding sequences in the nitrogen-fixing clade. PMID:35092309
An advanced method for the release, enrichment and purification of high-quality Arabidopsis thaliana rosette leaf trichomes enables profound insights into the trichome proteome. PMID:35086542
A simple guide to de novo transcriptome assembly and annotation. PMID:35076693
Integrative analysis of the shikonin metabolic network identifies new gene connections and reveals evolutionary insight into shikonin biosynthesis. PMID:35048120
Fitness Effects of Mutations: An Assessment of PROVEAN Predictions Using Mutation Accumulation Data. PMID:35038732
Spatiotemporal expression profile of novel and known small RNAs throughout rice plant development focussing on seed tissues. PMID:35012466
Integration of genome-wide association studies and gene coexpression networks unveils promising soybean resistance genes against five common fungal pathogens. PMID:34961779
Evolution of RGF/GLV/CLEL Peptide Hormones and Their Roles in Land Plant Growth and Regulation. PMID:34948169
Members of the ribosomal protein S6 (RPS6) family act as pro-viral factor for tomato spotted wilt orthotospovirus infectivity in Nicotiana benthamiana. PMID:34913556
qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE). PMID:34911434
Endosperm Evolution by Duplicated and Neofunctionalized Type I MADS-Box Transcription Factors. PMID:34897514
Analysis of CcGASA family members in Citrus clementina (Hort. ex Tan.) by a genome-wide approach. PMID:34852791
Novel genome characteristics contribute to the invasiveness of Phragmites australis (common reed). PMID:34839548
The U1 snRNP component RBP45d regulates temperature-responsive flowering in Arabidopsis. PMID:34791475
Transcriptome Profiling of Cu Stressed Petunia Petals Reveals Candidate Genes Involved in Fe and Cu Crosstalk. PMID:34769033
PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants. PMID:34747486
Lsi2: A black box in plant silicon transport. PMID:34720209
Identification, expression, and functional analysis of Hsf and Hsp20 gene families in Brachypodium distachyon under heat stress. PMID:34703676
Calling large indels in 1047 Arabidopsis with IndelEnsembler. PMID:34643730
Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation. PMID:34609518
SlKIX8 and SlKIX9 are negative regulators of leaf and fruit growth in tomato. PMID:34601614
RapGreen, an interactive software and web package to explore and analyze phylogenetic trees. PMID:34568824
Genomic Resources to Guide Improvement of the Shea Tree. PMID:34567033
Transcriptome repository of North-Western Himalayan endangered medicinal herbs: a paramount approach illuminating molecular perspective of phytoactive molecules and secondary metabolism. PMID:34557965
Data Management and Modeling in Plant Biology. PMID:34539712
Shoot and root insect herbivory change the plant rhizosphere microbiome and affects cabbage-insect interactions through plant-soil feedback. PMID:34537968
H2A ubiquitination is essential for Polycomb Repressive Complex 1-mediated gene regulation in Marchantia polymorpha. PMID:34465381
ROS-Scavenging Enzymes as an Antioxidant Response to High Concentration of Anthracene in the Liverwort Marchantia polymorpha L. PMID:34371683
The Arabidopsis Root Tip (Phospho)Proteomes at Growth-Promoting versus Growth-Repressing Conditions Reveal Novel Root Growth Regulators. PMID:34359847
The first draft genome of Picrorhiza kurrooa, an endangered medicinal herb from Himalayas. PMID:34294764
Copy number analyses of DNA repair genes reveal the role of poly(ADP-ribose) polymerase (PARP) in tree longevity. PMID:34278274
The CaCA superfamily genes in Saccharum: comparative analysis and their functional implications in response to biotic and abiotic stress. PMID:34275454
Return of the Lemnaceae: duckweed as a model plant system in the genomics and postgenomics era. PMID:34273173
TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes. PMID:34197621
A species-specific functional module controls formation of pollen apertures. PMID:34183783
Characterization of Japanese Plum (Prunus salicina) PsMYB10 Alleles Reveals Structural Variation and Polymorphisms Correlating With Fruit Skin Color. PMID:34168666
A forward genetics approach integrating genome-wide association study and expression quantitative trait locus mapping to dissect leaf development in maize (Zea mays). PMID:34087008
Maize ATR safeguards genome stability during kernel development to prevent early endosperm endocycle onset and cell death. PMID:34086963
Prunus persica plant endogenous peptides PpPep1 and PpPep2 cause PTI-like transcriptome reprogramming in peach and enhance resistance to Xanthomonas arboricola pv. pruni. PMID:34006221
Transgenerational effect of mutants in the RNA-directed DNA methylation pathway on the triploid block in Arabidopsis. PMID:33957942
Comparative analysis of MAPK and MKK gene families reveals differential evolutionary patterns in Brachypodium distachyon inbred lines. PMID:33868831
Ancestral sequence reconstruction - An underused approach to understand the evolution of gene function in plants? PMID:33868595
An Atlas of Genomic Resources for Studying Rosaceae Fruits and Ornamentals. PMID:33868343
A family of pathogen-induced cysteine-rich transmembrane proteins is involved in plant disease resistance. PMID:33856567
Topological clustering of regulatory genes confers pathogenic tolerance to cassava brown streak virus (CBSV) in cassava. PMID:33846415
Combining Nanopore and Illumina Sequencing Permits Detailed Analysis of Insertion Mutations and Structural Variations Produced by PEG-Mediated Transformation in Ostreococcus tauri. PMID:33802698
Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis). PMID:33710327
The Heat Shock Protein 40-Type Chaperone MASH Supports the Endoplasmic Reticulum-Associated Degradation E3 Ubiquitin Ligase MAKIBISHI1 in Medicago truncatula. PMID:33708234
Overexpression of vesicle-associated membrane protein PttVAP27-17 as a tool to improve biomass production and the overall saccharification yields in Populus trees. PMID:33593413
Genome-wide shifts in histone modifications at early stage of rice infection with Meloidogyne graminicola. PMID:33580630
Polycomb Repressive Complex 2 and KRYPTONITE regulate pathogen-induced programmed cell death in Arabidopsis. PMID:33566101
BHLH IRIDOID SYNTHESIS 3 is a member of a bHLH gene cluster regulating terpenoid indole alkaloid biosynthesis in Catharanthus roseus. PMID:33532692
Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat. PMID:33519854
Comparative genomics reveals new functional insights in uncultured MAST species. PMID:33452482
Phosphate-Starvation-Inducible S-Like RNase Genes in Rice Are Involved in Phosphate Source Recycling by RNA Decay. PMID:33424882
Shotgun proteomics of peach fruit reveals major metabolic pathways associated to ripening. PMID:33413072
Plasma membrane aquaporins interact with the endoplasmic reticulum resident VAP27 proteins at ER-PM contact sites and endocytic structures. PMID:33410187
Genome-wide characterization and analysis of the CCT motif family genes in soybean (Glycine max). PMID:33392793
PhyloGenes: An online phylogenetics and functional genomics resource for plant gene function inference. PMID:33392435
CRISPR/Cas9-Mediated Knockout of Galactinol Synthase-Encoding Genes Reduces Raffinose Family Oligosaccharide Levels in Soybean Seeds. PMID:33391326
Chloroplast Electron Chain, ROS Production, and Redox Homeostasis Are Modulated by COS-OGA Elicitation in Tomato (Solanum lycopersicum) Leaves. PMID:33381134
Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control. PMID:33361111
Using single-plant-omics in the field to link maize genes to functions and phenotypes. PMID:33346944
Genetic dissection of climacteric fruit ripening in a melon population segregating for ripening behavior. PMID:33328460
Plant TDP1 (Tyrosyl-DNA Phosphodiesterase 1): A Phylogenetic Perspective and Gene Expression Data Mining. PMID:33297410
Advancing knowledge of the plant nuclear periphery and its application for crop science. PMID:33295233
Comparative Analysis of ROS Network Genes in Extremophile Eukaryotes. PMID:33266251
GreenPhylDB v5: a comparative pangenomic database for plant genomes. PMID:33237299
Profiling Alternative 3' Untranslated Regions in Sorghum using RNA-seq Data. PMID:33193635
Screening of Salt Stress Responsive Genes in Brachypodium distachyon (L.) Beauv. by Transcriptome Analysis. PMID:33182395
Prometheus, an omics portal for interkingdom comparative genomic analyses. PMID:33112870
Genome-Wide Screening and Characterization of Non-Coding RNAs in Coffea canephora. PMID:32932872
Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate. PMID:32920602
An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice. PMID:32899740
Polycomb Repressive Complex 2-mediated histone modification H3K27me3 is associated with embryogenic potential in Norway spruce. PMID:32894759
Transcriptomic analysis at organ and time scale reveals gene regulatory networks controlling the sulfate starvation response of Solanum lycopersicum. PMID:32831040
The alcohol dehydrogenase gene family in sugarcane and its involvement in cold stress regulation. PMID:32727370
Molecular evolution and diversification of the GRF transcription factor family. PMID:32706846
Reference Genome for the Highly Transformable Setaria viridis ME034V. PMID:32694197
QTG-Finder2: A Generalized Machine-Learning Algorithm for Prioritizing QTL Causal Genes in Plants. PMID:32430305
Phylogenetic tree building in the genomic age. PMID:32424311
Model-Based Detection of Whole-Genome Duplications in a Phylogeny. PMID:32359154
Distinct Expression and Methylation Patterns for Genes with Different Fates following a Single Whole-Genome Duplication in Flowering Plants. PMID:32343808
Low-Copy Genes in Terpenoid Metabolism: The Evolution and Expression of MVK and DXR Genes in Angiosperms. PMID:32325804
AthCNV: A Map of DNA Copy Number Variations in the Arabidopsis Genome. PMID:32265262
High expression in maize pollen correlates with genetic contributions to pollen fitness as well as with coordinated transcription from neighboring transposable elements. PMID:32236090
De novo Assembly of Transcriptomes From a B73 Maize Line Introgressed With a QTL for Resistance to Gray Leaf Spot Disease Reveals a Candidate Allele of a Lectin Receptor-Like Kinase. PMID:32231673
Marginal Lands to Grow Novel Bio-Based Crops: A Plant Breeding Perspective. PMID:32194604
Evolutionary History and Activity of RNase H1-Like Proteins in Arabidopsis thaliana. PMID:32191307
Linking crop traits to transcriptome differences in a progeny population of tetraploid potato. PMID:32183694
Reconstruction of the Evolutionary Histories of UGT Gene Superfamily in Legumes Clarifies the Functional Divergence of Duplicates in Specialized Metabolism. PMID:32182686
Rice F-bZIP transcription factors regulate the zinc deficiency response. PMID:32133499
Deep Evolutionary History of the Phox and Bem1 (PB1) Domain Across Eukaryotes. PMID:32123237
Genetic control of root architectural plasticity in maize. PMID:32080722
Plant Molecular Responses to Potato Virus Y: A Continuum of Outcomes from Sensitivity and Tolerance to Resistance. PMID:32075268
The hornwort genome and early land plant evolution. PMID:32042158
Expression Atlas of Selaginella moellendorffii Provides Insights into the Evolution of Vasculature, Secondary Metabolism, and Roots. PMID:31988262
Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds. PMID:31911467
Cyberinfrastructure and resources to enable an integrative approach to studying forest trees. PMID:31892954
Draft Genomes of Two Artocarpus Plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis). PMID:31878322
Genomic resources for energy cane breeding in the post genomics era. PMID:31871586
Identification of Homeobox Genes Associated with Lignification and Their Expression Patterns in Bamboo Shoots. PMID:31835882
Pseudo-chromosome-length genome assembly of a double haploid "Bartlett" pear (Pyrus communis L.). PMID:31816089
VENOSA4, a Human dNTPase SAMHD1 Homolog, Contributes to Chloroplast Development and Abiotic Stress Tolerance. PMID:31792148
The MADS-box transcription factor PHERES1 controls imprinting in the endosperm by binding to domesticated transposons. PMID:31789592
Developmental Roles of AUX1/LAX Auxin Influx Carriers in Plants. PMID:31719828
Genome survey of resistance gene analogs in sugarcane: genomic features and differential expression of the innate immune system from a smut-resistant genotype. PMID:31694536
MaGenDB: a functional genomics hub for Malvaceae plants. PMID:31665439
SWEET Transporters for the Nourishment of Embryonic Tissues during Maize Germination. PMID:31591342
CRISPR/Cas inactivation of RECQ4 increases homeologous crossovers in an interspecific tomato hybrid. PMID:31483929
A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana. PMID:31250033
Reducing MSH4 copy number prevents meiotic crossovers between non-homologous chromosomes in Brassica napus. PMID:31142748
Arabidopsis mlo3 mutant plants exhibit spontaneous callose deposition and signs of early leaf senescence. PMID:31049793
Gcorn Plant: A Database for Retrieving Functional and Evolutionary Traits of Plant Genes. PMID:30971448
Prunus genetics and applications after de novo genome sequencing: achievements and prospects. PMID:30962943
Neofunctionalization of Mitochondrial Proteins and Incorporation into Signaling Networks in Plants. PMID:30938771
Comparative Genomics Analysis Provides New Insight Into Molecular Basis of Stomatal Movement in Kalanchoë fedtschenkoi. PMID:30930922
Infrastructures of systems biology that facilitate functional genomic study in rice. PMID:30874968
An Overview of Sucrose Synthases in Plants. PMID:30800137
Messages From the Past: New Insights in Plant Lectin Evolution. PMID:30761173
Extrachloroplastic PP7L Functions in Chloroplast Development and Abiotic Stress Tolerance. PMID:30760637
The Catalase Gene Family in Cotton: Genome-Wide Characterization and Bioinformatics Analysis. PMID:30682777
Biochemical properties and subcellular localization of six members of the HXK family in maize and its metabolic contribution to embryo germination. PMID:30646852
Glycosyltransferase Family 61 in Liliopsida (Monocot): The Story of a Gene Family Expansion. PMID:30619412
PhytoTypeDB: a database of plant protein inter-cultivar variability and function. PMID:30576486
Conservation and Diversification of Circadian Rhythmicity Between a Model Crassulacean Acid Metabolism Plant Kalanchoë fedtschenkoi and a Model C3 Photosynthesis Plant Arabidopsis thaliana. PMID:30546378
It's Hard to Avoid Avoidance: Uncoupling the Evolutionary Connection between Plant Growth, Productivity and Stress "Tolerance". PMID:30463352
Genome-wide analysis of the soybean CRK-family and transcriptional regulation by biotic stress signals triggering plant immunity. PMID:30440039
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. PMID:30418610
Lineage-Specific Expression Divergence in Grasses Is Associated with Male Reproduction, Host-Pathogen Defense, and Domestication. PMID:30398650
In silico-prediction of protein-protein interactions network about MAPKs and PP2Cs reveals a novel docking site variants in Brachypodium distachyon. PMID:30305661
Transcriptomics and co-expression networks reveal tissue-specific responses and regulatory hubs under mild and severe drought in papaya (Carica papaya L.). PMID:30267030
Characterization of Arabidopsis thaliana Hydroxyphenylpyruvate Reductases in the Tyrosine Conversion Pathway. PMID:30233632
Evolution of Protein Ductility in Duplicated Genes of Plants. PMID:30177944
Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant. PMID:29873777
Plant Fructokinases: Evolutionary, Developmental, and Metabolic Aspects in Sink Tissues. PMID:29616058
The 2018 Nucleic Acids Research database issue and the online molecular biology database collection. PMID:29316735 -
Dissecting plant genomes with the PLAZA comparative genomics platform
PubMed citations: 127.
127 articles citing: Dissecting plant genomes with the PLAZA comparative genomics platform
Chromosome-scale assembly and annotation of the perennial ryegrass genome. PMID:35831814
The Role of Pumilio RNA Binding Protein in Plants. PMID:34944494
Topology of the redox network during induction of photosynthesis as revealed by time-resolved proteomics in tobacco. PMID:34919428
The Chloranthus sessilifolius genome provides insight into early diversification of angiosperms. PMID:34836967
PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants. PMID:34747486
ACONITASE 3 is part of theANAC017 transcription factor-dependent mitochondrial dysfunction response. PMID:34618107
Light intensity and spectral composition drive reproductive success in the marine benthic diatom Seminavis robusta. PMID:34475415
Copy number analyses of DNA repair genes reveal the role of poly(ADP-ribose) polymerase (PARP) in tree longevity. PMID:34278274
Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly. PMID:34247248
TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes. PMID:34197621
Whole-genome microsynteny-based phylogeny of angiosperms. PMID:34108452
A forward genetics approach integrating genome-wide association study and expression quantitative trait locus mapping to dissect leaf development in maize (Zea mays). PMID:34087008
Less Is More, Natural Loss-of-Function Mutation Is a Strategy for Adaptation. PMID:33367264
Comparative Study of Pine Reference Genomes Reveals Transposable Element Interconnected Gene Networks. PMID:33081418
Calcium Binding by Arabinogalactan Polysaccharides Is Important for Normal Plant Development. PMID:32769130
Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and Indole-3-Acetic Acid Metabolism. PMID:32581114
Genome-Scale Characterization of Predicted Plastid-Targeted Proteomes in Higher Plants. PMID:32427841
Chromosome-Scale Assembly of Winter Oilseed Rape Brassica napus. PMID:32411167
Evolutionary conservation of the intrinsic disorder-based Radical-Induced Cell Death1 hub interactome. PMID:31831797
A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae. PMID:31579586
Reference gene and small RNA data from multiple tissues of Davidia involucrata Baill. PMID:31551451
The Evolution of Gene Duplicates in Angiosperms and the Impact of Protein-Protein Interactions and the Mechanism of Duplication. PMID:31364708
Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth. PMID:31361386
Conserved redox-dependent DNA binding of ROXY glutaredoxins with TGA transcription factors. PMID:31245678
Comparing time series transcriptome data between plants using a network module finding algorithm. PMID:31164912
OPENER Is a Nuclear Envelope and Mitochondria Localized Protein Required for Cell Cycle Progression in Arabidopsis. PMID:31023726
Genome-wide identification, classification and expression analysis of the JmjC domain-containing histone demethylase gene family in maize. PMID:30935385
Spring Is Coming: Genetic Analyses of the Bud Break Date Locus Reveal Candidate Genes From the Cold Perception Pathway to Dormancy Release in Apple (Malus × domestica Borkh.). PMID:30930909
Genome-wide characterization and expression profiling of SWEET genes in cabbage (Brassica oleracea var. capitata L.) reveal their roles in chilling and clubroot disease responses. PMID:30696401
Genomic resources for the Neotropical tree genus Cedrela (Meliaceae) and its relatives. PMID:30658593
Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen. PMID:30373829
Genome-Wide Association Studies Reveal the Genetic Basis of Ionomic Variation in Rice. PMID:30373760
Evolutionary insights from comparative transcriptome and transcriptome-wide coalescence analyses in Tetrastigma hemsleyanum. PMID:30249188
Genome Analyses of the Microalga Picochlorum Provide Insights into the Evolution of Thermotolerance in the Green Lineage. PMID:30113623
Arabidopsis thaliana SPF1 and SPF2 are nuclear-located ULP2-like SUMO proteases that act downstream of SIZ1 in plant development. PMID:30053161
MorphDB: Prioritizing Genes for Specialized Metabolism Pathways and Gene Ontology Categories in Plants. PMID:29616063
Contributions of Zea mays subspecies mexicana haplotypes to modern maize. PMID:29187731
The Tyrosyl-DNA Phosphodiesterase 1β (Tdp1β) Gene Discloses an Early Response to Abiotic Stresses. PMID:29099800
Coordinated Functional Divergence of Genes after Genome Duplication in Arabidopsis thaliana. PMID:29070508
PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics. PMID:29069403
CHASE-Containing Histidine Kinase Receptors in Apple Tree: From a Common Receptor Structure to Divergent Cytokinin Binding Properties and Specific Functions. PMID:28979279
PLATINUM SENSITIVE 2 LIKE impacts growth, root morphology, seed set, and stress responses. PMID:28678890
Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. PMID:28630437
The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. PMID:28492275
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants. PMID:28228535
Reverse Genetics and High Throughput Sequencing Methodologies for Plant Functional Genomics. PMID:28217003
Sugarcane transcriptome analysis in response to infection caused by Acidovorax avenae subsp. avenae. PMID:27936012
A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution. PMID:27557478
Highlighting the Need for Systems-Level Experimental Characterization of Plant Metabolic Enzymes. PMID:27516767
Are We There Yet? Reliably Estimating the Completeness of Plant Genome Sequences. PMID:27512012
Origin and Functional Prediction of Pollen Allergens in Plants. PMID:27436829
Genome-scale DNA variant analysis and functional validation of a SNP underlying yellow fruit color in wild strawberry. PMID:27377763
A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants. PMID:27261064
Molecular evolution analysis of WUSCHEL-related homeobox transcription factor family reveals functional divergence among clades in the homeobox region. PMID:27150824
The Evolutionarily Conserved E3 Ubiquitin Ligase AtCHIP Contributes to Plant Immunity. PMID:27014328
Transferring an optimized TAP-toolbox for the isolation of protein complexes to a portfolio of rice tissues. PMID:27003905
pATsi: Paralogs and Singleton Genes from Arabidopsis thaliana. PMID:26792975
Network-Based Comparative Analysis of Arabidopsis Immune Responses to Golovinomyces orontii and Botrytis cinerea Infections. PMID:26750561
Comprehensive Expression Profiling of Rice Tetraspanin Genes Reveals Diverse Roles During Development and Abiotic Stress. PMID:26697042
Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome. PMID:26652261
Towards understanding peroxisomal phosphoregulation in Arabidopsis thaliana. PMID:26649560
Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B. PMID:26353816
Transcriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes in leaves and fruits. PMID:26334613
Drought Induces Distinct Growth Response, Protection, and Recovery Mechanisms in the Maize Leaf Growth Zone. PMID:26297138
BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements. PMID:26254488
Comprehensive Evolutionary and Expression Analysis of FCS-Like Zinc finger Gene Family Yields Insights into Their Origin, Expansion and Divergence. PMID:26252898
Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis. PMID:26162601
Selection for Improved Energy Use Efficiency and Drought Tolerance in Canola Results in Distinct Transcriptome and Epigenome Changes. PMID:26082400
Species-Level Phylogeny and Polyploid Relationships in Hordeum (Poaceae) Inferred by Next-Generation Sequencing and In Silico Cloning of Multiple Nuclear Loci. PMID:26048340
Using RNA-Seq to assemble a rose transcriptome with more than 13,000 full-length expressed genes and to develop the WagRhSNP 68k Axiom SNP array for rose (Rosa L.). PMID:25954285
MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes. PMID:25909041
Global scale transcriptome analysis of Arabidopsis embryogenesis in vitro. PMID:25887996
Unlimited Thirst for Genome Sequencing, Data Interpretation, and Database Usage in Genomic Era: The Road towards Fast-Track Crop Plant Improvement. PMID:25874133
Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. PMID:25549671
An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes. PMID:25521792
Drought tolerance conferred to sugarcane by association with Gluconacetobacter diazotrophicus: a transcriptomic view of hormone pathways. PMID:25489849
GenomicusPlants: a web resource to study genome evolution in flowering plants. PMID:25432975
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements. PMID:25399418
A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana. PMID:25361952
Insights into conifer giga-genomes. PMID:25349325
Distinct double flower varieties in Camellia japonica exhibit both expansion and contraction of C-class gene expression. PMID:25344122
PLAZA 3.0: an access point for plant comparative genomics. PMID:25324309
Plant protein peptidase inhibitors: an evolutionary overview based on comparative genomics. PMID:25253557
Elucidating gene function and function evolution through comparison of co-expression networks of plants. PMID:25191328
PlantCAZyme: a database for plant carbohydrate-active enzymes. PMID:25125445
Comparative genomic and transcriptomic analysis of terpene synthases in Arabidopsis and Medicago. PMID:25075527
Inference of transcriptional networks in Arabidopsis through conserved noncoding sequence analysis. PMID:24989046
High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource. PMID:24927599
The evolution of the actin binding NET superfamily. PMID:24926301
A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. PMID:24914054
Evolution and communication of subcellular compartments: An integrated approach. PMID:24786592
Genome-wide identification, evolution and expression analysis of mTERF gene family in maize. PMID:24718683
Reversal of senescence by N resupply to N-starved Arabidopsis thaliana: transcriptomic and metabolomic consequences. PMID:24692653
From plant genomes to protein families: computational tools. PMID:24688740
Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation. PMID:24653211
Genomics and bioinformatics resources for translational science in Rosaceae. PMID:24634697
The synaptonemal complex protein ZYP1 is required for imposition of meiotic crossovers in barley. PMID:24563202
Differential methylation during maize leaf growth targets developmentally regulated genes. PMID:24488968
ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. PMID:24443518
The non-JAZ TIFY protein TIFY8 from Arabidopsis thaliana is a transcriptional repressor. PMID:24416306
Ancient signals: comparative genomics of green plant CDPKs. PMID:24342084
POGs2: a web portal to facilitate cross-species inferences about protein architecture and function in plants. PMID:24340041
TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes. PMID:24330842
eggNOG v4.0: nested orthology inference across 3686 organisms. PMID:24297252
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. PMID:24174544
The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis. PMID:24045019
Functional analyses of a flavonol synthase-like gene from Camellia nitidissima reveal its roles in flavonoid metabolism during floral pigmentation. PMID:23938391
CrusView: a Java-based visualization platform for comparative genomics analyses in Brassicaceae species. PMID:23898041
Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions. PMID:23879659
dbWFA: a web-based database for functional annotation of Triticum aestivum transcripts. PMID:23660284
Current challenges and future potential of tomato breeding using omics approaches. PMID:23641179
Quantitative high resolution mapping of HvMLH3 foci in barley pachytene nuclei reveals a strong distal bias and weak interference. PMID:23554258
Flying saucer1 is a transmembrane RING E3 ubiquitin ligase that regulates the degree of pectin methylesterification in Arabidopsis seed mucilage. PMID:23482858
The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla). PMID:23435089
Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants. PMID:23382190
Identification of putative rhamnogalacturonan-II specific glycosyltransferases in Arabidopsis using a combination of bioinformatics approaches. PMID:23272088
MIPS PlantsDB: a database framework for comparative plant genome research. PMID:23203886
PGDD: a database of gene and genome duplication in plants. PMID:23180799
PMRD: a curated database for genes and mutants involved in plant male reproduction. PMID:23153247
Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks. PMID:23110892
Evolution and Structural Diversification of PILS Putative Auxin Carriers in Plants. PMID:23091477
Arabidopsis thaliana mTERF proteins: evolution and functional classification. PMID:23087700
Decoding plant and animal genome plasticity from differential paleo-evolutionary patterns and processes. PMID:22833223
Taking the next step: building an Arabidopsis information portal. PMID:22751211
The genes and enzymes of the carotenoid metabolic pathway in Vitis vinifera L. PMID:22702718
Comparative Genomics and Molecular Characterization of the Maize PIN Family Proteins. PMID:22629275
Systematic identification of functional plant modules through the integration of complementary data sources. PMID:22589469 -
PLAZA: a comparative genomics resource to study gene and genome evolution in plants
PubMed citations: 126.
126 articles citing: PLAZA: a comparative genomics resource to study gene and genome evolution in plants
Chromosome-scale assembly and annotation of the perennial ryegrass genome. PMID:35831814
PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants. PMID:34747486
Evolutionary Genomics of Sex-Related Chromosomes at the Base of the Green Lineage. PMID:34599324
Molecular characterization and expression of cyclic nucleotide gated ion channels 19 and 20 in Arabidopsis thaliana for their potential role in salt stress. PMID:34588894
Analysis of a gene family for PDF-like peptides from Arabidopsis. PMID:34556705
Copy number analyses of DNA repair genes reveal the role of poly(ADP-ribose) polymerase (PARP) in tree longevity. PMID:34278274
Rootstock effects on scion gene expression in maritime pine. PMID:34078936
Characterization and functional analysis of the Hydroxycinnamoyl-CoA: shikimate hydroxycinnamoyl transferase (HCT) gene family in poplar. PMID:33665007
Knowing When to Self-Eat - Fine-Tuning Autophagy Through ATG8 Iso-forms in Plants. PMID:33224169
Molecular study of drought response in the Mediterranean conifer Pinus pinaster Ait.: Differential transcriptomic profiling reveals constitutive water deficit-independent drought tolerance mechanisms. PMID:33005345
Transcriptional Landscapes of Divergent Sporophyte Development in Two Mosses, Physcomitrium (Physcomitrella) patens and Funaria hygrometrica. PMID:32587596
Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. PMID:32384671
Reconstruction of the Evolutionary Histories of UGT Gene Superfamily in Legumes Clarifies the Functional Divergence of Duplicates in Specialized Metabolism. PMID:32182686
The strength and pattern of natural selection on gene expression in rice. PMID:32051590
A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae. PMID:31579586
The plastid and mitochondrial genomes of Eucalyptus grandis. PMID:30760198
Low-oxygen response is triggered by an ATP-dependent shift in oleoyl-CoA in Arabidopsis. PMID:30509981
RNA sequencing and de novo assembly of Solanum trilobatum leaf transcriptome to identify putative transcripts for major metabolic pathways. PMID:30337583
Genome-wide identification and analysis of the COI gene family in wheat (Triticum aestivum L.). PMID:30332983
Arabidopsis Lunapark proteins are involved in ER cisternae formation. PMID:29797722
The Sequenced Angiosperm Genomes and Genome Databases. PMID:29706973
MorphDB: Prioritizing Genes for Specialized Metabolism Pathways and Gene Ontology Categories in Plants. PMID:29616063
MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. PMID:29220435
PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics. PMID:29069403
Transcriptologs: A Transcriptome-Based Approach to Predict Orthology Relationships. PMID:28469416
The draft genome of Ruellia speciosa (Beautiful Wild Petunia: Acanthaceae). PMID:28431014
Identification and characterization of durum wheat microRNAs in leaf and root tissues. PMID:28321518
Characterization and expression analysis of genes encoding ubiquitin conjugating domain-containing enzymes in Carica papaya. PMID:28231288
Sulfur deficiency-induced repressor proteins optimize glucosinolate biosynthesis in plants. PMID:27730214
Characterization of the LBD gene family in Brachypodium: a phylogenetic and transcriptional study. PMID:27686461
Transcriptome responses to temperature, water availability and photoperiod are conserved among mature trees of two divergent Douglas-fir provenances from a coastal and an interior habitat. PMID:27565139
The emergence of molecular profiling and omics techniques in seagrass biology; furthering our understanding of seagrasses. PMID:27443314
A comprehensive view of the web-resources related to sericulture. PMID:27307138
Bioinformatics resources for pollen. PMID:27271281
A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants. PMID:27261064
Members of BTB Gene Family of Scaffold Proteins Suppress Nitrate Uptake and Nitrogen Use Efficiency. PMID:27208309
Sequence-Specific Protein Aggregation Generates Defined Protein Knockdowns in Plants. PMID:27208282
In Silico Analysis of Arabidopsis thaliana Peroxisomal 6-Phosphogluconate Dehydrogenase. PMID:27034898
De Novo Transcriptome Assembly and Characterization for the Widespread and Stress-Tolerant Conifer Platycladus orientalis. PMID:26881995
pATsi: Paralogs and Singleton Genes from Arabidopsis thaliana. PMID:26792975
A sex-inducing pheromone triggers cell cycle arrest and mate attraction in the diatom Seminavis robusta. PMID:26786712
FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants. PMID:26754669
Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. PMID:26668304
Genome-Wide Identification, Phylogenetic and Expression Analyses of the Ubiquitin-Conjugating Enzyme Gene Family in Maize. PMID:26606743
A phylogenetic approach to study the origin and evolution of the CRINKLY4 family. PMID:26557128
Unraveling the evolution and regulation of the alternative oxidase gene family in plants. PMID:26438244
Integrative Approaches to Enhance Understanding of Plant Metabolic Pathway Structure and Regulation. PMID:26371234
Living to Die and Dying to Live: The Survival Strategy behind Leaf Senescence. PMID:26276844
BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements. PMID:26254488
Divergence in Enzymatic Activities in the Soybean GST Supergene Family Provides New Insight into the Evolutionary Dynamics of Whole-Genome Duplicates. PMID:26219583
Peroxisomal NADP-isocitrate dehydrogenase is required for Arabidopsis stomatal movement. PMID:25894616
A hormone-responsive C1-domain-containing protein At5g17960 mediates stress response in Arabidopsis thaliana. PMID:25590629
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements. PMID:25399418
Plastid-LCGbase: a collection of evolutionarily conserved plastid-associated gene pairs. PMID:25378306
Transcriptome analysis indicates considerable divergence in alternative splicing between duplicated genes in Arabidopsis thaliana. PMID:25326238
PLAZA 3.0: an access point for plant comparative genomics. PMID:25324309
Taxonomically restricted genes of Craterostigma plantagineum are modulated in their expression during dehydration and rehydration. PMID:25262421
Functional screening of a cDNA library from the desiccation-tolerant plant Selaginella lepidophylla in yeast mutants identifies trehalose biosynthesis genes of plant and microbial origin. PMID:25246071
Protein subcellular relocalization of duplicated genes in Arabidopsis. PMID:25193306
Frequent changes in expression profile and accelerated sequence evolution of duplicated imprinted genes in arabidopsis. PMID:25115008
Genome-wide comparative analysis of tonoplast intrinsic protein (TIP) genes in plants. PMID:25095751
Transcriptomic landscape of prophase I sunflower male meiocytes. PMID:24982667
DUF581 is plant specific FCS-like zinc finger involved in protein-protein interaction. PMID:24901469
Exploiting a Reference Genome in Terms of Duplications: The Network of Paralogs and Single Copy Genes in Arabidopsis thaliana. PMID:24833233
Why assembling plant genome sequences is so challenging. PMID:24832233
Transcriptional control of ROS homeostasis by KUODA1 regulates cell expansion during leaf development. PMID:24806884
Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach. PMID:24773703
The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle. PMID:24548928
Quantitative analysis of the mitochondrial and plastid proteomes of the moss Physcomitrella patens reveals protein macrocompartmentation and microcompartmentation. PMID:24515833
A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification. PMID:24453163
TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes. PMID:24330842
De novo assembly of the transcriptome of the non-model plant Streptocarpus rexii employing a novel heuristic to recover locus-specific transcript clusters. PMID:24324652
Sequence evolution and expression regulation of stress-responsive genes in natural populations of wild tomato. PMID:24205149
GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology. PMID:24194592
Functional characterisation of three members of the Vitis vinifera L. carotenoid cleavage dioxygenase gene family. PMID:24106789
Functional analyses of a flavonol synthase-like gene from Camellia nitidissima reveal its roles in flavonoid metabolism during floral pigmentation. PMID:23938391
Plant F-box protein evolution is determined by lineage-specific timing of major gene family expansion waves. PMID:23904908
Silicon era of carbon-based life: application of genomics and bioinformatics in crop stress research. PMID:23759993
Characterization of the GGPP synthase gene family in Arabidopsis thaliana. PMID:23729351
Identification of two additional members of the tRNA isopentenyltransferase family in Physcomitrella patens. PMID:23712255
From manual curation to visualization of gene families and networks across Solanaceae plant species. PMID:23681907
The hybrid four-CBS-domain KINβγ subunit functions as the canonical γ subunit of the plant energy sensor SnRK1. PMID:23551663
An Arabidopsis ATPase gene involved in nematode-induced syncytium development and abiotic stress responses. PMID:23480402
The SUD1 gene encodes a putative E3 ubiquitin ligase and is a positive regulator of 3-hydroxy-3-methylglutaryl coenzyme a reductase activity in Arabidopsis. PMID:23404890
Developmental and environmental regulation of Aquaporin gene expression across Populus species: divergence or redundancy? PMID:23393587
JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison. PMID:23324080
Identification of putative rhamnogalacturonan-II specific glycosyltransferases in Arabidopsis using a combination of bioinformatics approaches. PMID:23272088
Toward a comprehensive phylogenetic reconstruction of the evolutionary history of mitogen-activated protein kinases in the plant kingdom. PMID:23230446
LSM proteins provide accurate splicing and decay of selected transcripts to ensure normal Arabidopsis development. PMID:23221597
PIECE: a database for plant gene structure comparison and evolution. PMID:23180792
Mutations in two non-canonical Arabidopsis SWI2/SNF2 chromatin remodeling ATPases cause embryogenesis and stem cell maintenance defects. PMID:23062007
Analysis of tiling array expression studies with flexible designs in Bioconductor (waveTiling). PMID:22974078
Expansive evolution of the trehalose-6-phosphate phosphatase gene family in Arabidopsis. PMID:22855938
Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations. PMID:22719757
The genes and enzymes of the carotenoid metabolic pathway in Vitis vinifera L. PMID:22702718
Interactions of an Arabidopsis RanBPM homologue with LisH-CTLH domain proteins revealed high conservation of CTLH complexes in eukaryotes. PMID:22676313
Variable Regions of PI4P 5-Kinases Direct PtdIns(4,5)P(2) Toward Alternative Regulatory Functions in Tobacco Pollen Tubes. PMID:22639629
Activation of the carbon concentrating mechanism by CO2 deprivation coincides with massive transcriptional restructuring in Chlamydomonas reinhardtii. PMID:22634764
Systematic identification of functional plant modules through the integration of complementary data sources. PMID:22589469
A novel putative auxin carrier family regulates intracellular auxin homeostasis in plants. PMID:22504182
Toward community standards in the quest for orthologs. PMID:22332236
Dynamics and adaptive benefits of protein domain emergence and arrangements during plant genome evolution. PMID:22250127
Dissecting plant genomes with the PLAZA comparative genomics platform. PMID:22198273
Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids. PMID:22180627
Arabidopsis ULTRAVIOLET-B-INSENSITIVE4 maintains cell division activity by temporal inhibition of the anaphase-promoting complex/cyclosome. PMID:22167059
DNA damage in plant herbarium tissue. PMID:22163018
Advances in omics and bioinformatics tools for systems analyses of plant functions. PMID:22156726
Maize rough endosperm3 encodes an RNA splicing factor required for endosperm cell differentiation and has a nonautonomous effect on embryo development. PMID:22138152
LegumeIP: an integrative database for comparative genomics and transcriptomics of model legumes. PMID:22110036
Phytozome: a comparative platform for green plant genomics. PMID:22110026
GenomeView: a next-generation genome browser. PMID:22102585
i-ADHoRe 3.0--fast and sensitive detection of genomic homology in extremely large data sets. PMID:22102584
Bipartite promoter element required for auxin response. PMID:22100645
Constitutive expression of a grapevine polygalacturonase-inhibiting protein affects gene expression and cell wall properties in uninfected tobacco. PMID:22078230
Organ and cell type-specific complementary expression patterns and regulatory neofunctionalization between duplicated genes in Arabidopsis thaliana. PMID:22058183
Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine. PMID:21767361
Conserved CDC20 cell cycle functions are carried out by two of the five isoforms in Arabidopsis thaliana. PMID:21687678
Comparative network analysis reveals that tissue specificity and gene function are important factors influencing the mode of expression evolution in Arabidopsis and rice. PMID:21571672
Ancestral polyploidy in seed plants and angiosperms. PMID:21478875
Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family. PMID:21464319
Identification of drought-responsive universal stress proteins in viridiplantae. PMID:21423406
MicroSyn: a user friendly tool for detection of microsynteny in a gene family. PMID:21418570
SyMAP v3.4: a turnkey synteny system with application to plant genomes. PMID:21398631
Novel protein-protein interaction family proteins involved in chloroplast movement response. PMID:21389774
How and why DNA barcodes underestimate the diversity of microbial eukaryotes. PMID:21347361
Small yet effective: the ethylene responsive element binding factor-associated amphiphilic repression (EAR) motif. PMID:20505346 - http://dx.doi.org/10.1093/nar/gku986
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classification
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
fair
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
function analysis
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
gene ontology enrichment
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
genome annotation
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein analysis
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein domain
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
polypeptide_region
metasource: Fairsharing.org
version: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
general plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
classification
metasource: Fairsharing.orgversion: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
fair
metasource: Fairsharing.orgversion: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
function analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
gene ontology enrichment
metasource: Fairsharing.orgversion: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
genome annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein domain
metasource: Fairsharing.orgversion: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
polypeptide_region
metasource: Fairsharing.orgversion: FAIRsharing.org: PLAZA; PLAZA; DOI: https://doi.org/10.25504/FAIRsharing.wBOua0; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:09 p.m.
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
general plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
classification function analysis gene ontology enrichment genome genome annotation protein analysis protein domain polypeptide region plant plant
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