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PDBFINDER reformatted PDB files

Names
More detailed information about this field from each metasource.

PDBFINDER reformatted PDB files
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370

pdbfinder
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370

Other names: pdbfinder

Names

More detailed information about this field from each metasource.

PDBFINDER reformatted PDB files

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370

pdbfinder

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370

This source may no longer be available. No known URL could be resolved successfully.

This database holds for each PDB file a structured, search-engine-friendly-formatted entry that holds the data-items most likely needed for people search for certain types of PDB entries. It is not useful to search in atomic coordinates: it is meant to ad searches in the administrative records of PDB files.

Description

More detailed information about this field from each metasource.

This database holds for each PDB file a structured, search-engine-friendly-formatted entry that holds the data-items most likely needed for people search for certain types of PDB entries. It is not useful to search in atomic coordinates: it is meant to ad searches in the administrative records of PDB files.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370

Webpage:

http://swift.cmbi.ru.nl/gv/pdbfinder/

Webpage

More detailed information about this field from each metasource.

http://swift.cmbi.ru.nl/gv/pdbfinder/

metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370

Publications:

Publications
More detailed information about this field from each metasource.

http://dx.doi.org/10.1093/nar/gku1028
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370

http://dx.doi.org/10.1093/nar/gku1028

Tags:

Tags
More detailed information about this field from each metasource.

proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370

proteins

More to explore:

1/20

PDB facilities

Database of secondary structures of proteins

WHAT IF

PDB Related Datbases present a series of databases that run parallel to the PDB. DSSP holds the secondary structure of the proteins. PDBREPORT holds reports on the structure quality and lists errors. ...

HSSP

Homology-derived secondary structure of proteins database.

Worldwide Protein Data Bank

The Protein Data Bank (PDB) is an archive of experimentally determined three-dimensional structures of biological macromolecules that serves a global community of researchers, educators, and students. ...

PDB-Ligand

PDB-Ligand is a three dimensional structure database of small molecular ligands that are bound to larger biomolecules deposited in the Protein Data Bank (PDB). One unique feature of PDB-Ligand is that ...

Het-PDB Navi

Het-PDB Navi is a database that collects small molecules found in Protein Data Bank (PDB). An atomic reality of protein function is based on interactions between a protein and another molecule. One of ...

PDB-REDO

PDB-REDO is a databank of optimised (re-refined, rebuilt and validated) Protein Data Bank entries. It covers nearly all structure models derived from X-ray and electron diffraction that have deposited ...

RCSB Protein Data Bank

This resource is powered by the Protein Data Bank archive-information about the 3D shapes of proteins, nucleic acids, and complex assemblies that helps students and researchers understand all aspects ...

Compilation and Creation of datasets from PDB

ccPDB (Compilation and Creation of datasets from PDB) is a collection of commonly used data sets for structural or functional annotation of proteins. There are numerous datasets from the literature an ...

Jenalib: Jena Library of Biological Macromolecules

The IMB Jena Image Library of Biological Macromolecules (http://www.imb-jena.de/IMAGE.html) is aimed at a better dissemination of information on three-dimensional biopolymer structures with an emphasi ...

PDB-REPRDB

PDB-REPRDB is a reorganized database of protein chains from PDB(Protein Data Bank), and provides 'the list of the representative protein chains' and 'the list of similar protein chain groups'.

PDB_REDO databank

The PDB_REDO databank contains alternative (in many cases higher quality) versions of Protein Data Bank (PDB) structure models that were optimised by model refinement and rebuilding. The structure mo ...

PDB_TM

Integral membrane proteins play important roles in living cells. Although these proteins are estimated to constitute around 25% of proteins at a genomic scale, the Protein Data Bank (PDB, http://www.r ...

sc-PDB

Potential drug-binding sites in protein structures from the PDB

PhyloPat

Phylogenetic patterns of genes from the Ensembl database

ValidatorDB

ValidatorDB is a collection of validation results for the entire Protein Data Bank. Annotation (3-letter code) of HET residues larger than 6 heavy atoms is inspected, i.e. if the residue has the same ...

Protein Data Bank Format

An exchange format for reporting experimentally determined three-dimensional structures of biological macromolecules that serves a global community of researchers, educators, and students. The data co ...

FireDB

fireDB is a database of Protein Data Bank structures, ligands and annotated functional site residues. The database can be accessed by PDB codes or UniProt accession numbers as well as keywords.

Big Browser Extensible Data Format

The bigBed format stores annotation items that can either be simple, or a linked collection of exons, much as BED files do. BigBed files are created initially from BED type files, using the program be ...

Darwin Core translations

The Darwin Core is meant to serve a global community. Access to the documents describing the standard in multiple languages will facilitate open access and global adoption. This resource is meant to b ...

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine

PDBFINDER reformatted PDB files Names More detailed information about this field from each metasource. × PDBFINDER reformatted PDB files metasource: bio.tools version: extracted_at: 2022-11-04T11:26:54.111370 pdbfinder metasource: bio.tools version: extracted_at: 2022-11-04T11:26:54.111370 Close

Webpage:

Publications: Publications More detailed information about this field from each metasource. × http://dx.doi.org/10.1093/nar/gku1028 metasource: bio.tools version: extracted_at: 2022-11-04T11:26:54.111370 Close

Tags: Tags More detailed information about this field from each metasource. × proteins metasource: bio.tools version: extracted_at: 2022-11-04T11:26:54.111370 Close

More to explore:

1/20

PDB facilities

WHAT IF

HSSP

Worldwide Protein Data Bank

PDB-Ligand

Het-PDB Navi

PDB-REDO

RCSB Protein Data Bank

Compilation and Creation of datasets from PDB

Jenalib: Jena Library of Biological Macromolecules

PDB-REPRDB

PDB_REDO databank

PDB_TM

sc-PDB

PhyloPat

ValidatorDB

Protein Data Bank Format

FireDB

Big Browser Extensible Data Format

Darwin Core translations

PDBFINDER reformatted PDB files

Names
More detailed information about this field from each metasource.

PDBFINDER reformatted PDB files
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370

pdbfinder
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370

Publications:

Publications
More detailed information about this field from each metasource.

http://dx.doi.org/10.1093/nar/gku1028
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370

Tags:

Tags
More detailed information about this field from each metasource.

proteins
metasource: bio.tools
version: extracted_at: 2022-11-04T11:26:54.111370