Neuroscience Information Framework Standard Ontology
Names
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Neuroscience Information Framework Standard Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: NIFSTD; Neuroscience Information Framework Standard Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vgw1m6; Last edited: Nov. 26, 2019, 11:03 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
NIFSTD
metasource: Fairsharing.org
version: FAIRsharing.org: NIFSTD; Neuroscience Information Framework Standard Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vgw1m6; Last edited: Nov. 26, 2019, 11:03 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 3.1 - January 15, 2018 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/NIFSTD
Neuroscience Information Framework (NIF) Standard Ontology
metasource: Biontology / Bioportal
version: 3.1 - January 15, 2018 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/NIFSTD
Names
More detailed information about this field from each metasource.
Neuroscience Information Framework Standard Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: NIFSTD; Neuroscience Information Framework Standard Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vgw1m6; Last edited: Nov. 26, 2019, 11:03 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
NIFSTD
metasource: Fairsharing.orgversion: FAIRsharing.org: NIFSTD; Neuroscience Information Framework Standard Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vgw1m6; Last edited: Nov. 26, 2019, 11:03 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 3.1 - January 15, 2018 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/NIFSTD
Neuroscience Information Framework (NIF) Standard Ontology
metasource: Biontology / Bioportalversion: 3.1 - January 15, 2018 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/NIFSTD
Other names: NIFSTD, Neuroscience Information Framework (NIF) Standard Ontology
Names
More detailed information about this field from each metasource.
Neuroscience Information Framework Standard Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: NIFSTD; Neuroscience Information Framework Standard Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vgw1m6; Last edited: Nov. 26, 2019, 11:03 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
NIFSTD
metasource: Fairsharing.orgversion: FAIRsharing.org: NIFSTD; Neuroscience Information Framework Standard Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vgw1m6; Last edited: Nov. 26, 2019, 11:03 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 3.1 - January 15, 2018 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/NIFSTD
Neuroscience Information Framework (NIF) Standard Ontology
metasource: Biontology / Bioportalversion: 3.1 - January 15, 2018 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/NIFSTD
NIF Standard ontology (NIFSTD) is a core component of Neuroscience Information Framework (NIF) project (http://neuinfo.org), a semantically enhanced portal for accessing and integrating neuroscience data, tools and information. NIFSTD includes a set of modular ontologies that provide a comprehensive collection of terminologies to describe neuroscience data and resources.
Description
More detailed information about this field from each metasource.
NIF Standard ontology (NIFSTD) is a core component of Neuroscience Information Framework (NIF) project (http://neuinfo.org), a semantically enhanced portal for accessing and integrating neuroscience data, tools and information. NIFSTD includes a set of modular ontologies that provide a comprehensive collection of terminologies to describe neuroscience data and resources.
metasource: Fairsharing.orgversion: FAIRsharing.org: NIFSTD; Neuroscience Information Framework Standard Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vgw1m6; Last edited: Nov. 26, 2019, 11:03 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 3.1 - January 15, 2018 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/NIFSTD
Webpage:
http://ontology.neuinfo.orgWebpage
More detailed information about this field from each metasource.
http://ontology.neuinfo.org
metasource: Fairsharing.orgversion: FAIRsharing.org: NIFSTD; Neuroscience Information Framework Standard Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vgw1m6; Last edited: Nov. 26, 2019, 11:03 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 3.1 - January 15, 2018 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/NIFSTD
Licence:
Name: Creative Commons Attribution 4.0 International (CC BY 4.0)Licence name
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Creative Commons Attribution 4.0 International (CC BY 4.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: NIFSTD; Neuroscience Information Framework Standard Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vgw1m6; Last edited: Nov. 26, 2019, 11:03 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Licence URL
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https://creativecommons.org/licenses/by/4.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: NIFSTD; Neuroscience Information Framework Standard Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vgw1m6; Last edited: Nov. 26, 2019, 11:03 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience
PMID: 18975148
metasource: Fairsharing.org
version: FAIRsharing.org: NIFSTD; Neuroscience Information Framework Standard Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vgw1m6; Last edited: Nov. 26, 2019, 11:03 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
http://neuinfo.org/about/publications.shtm
metasource: Biontology / Bioportal
version: 3.1 - January 15, 2018 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/NIFSTD
Publications
More detailed information about this field from each metasource.
The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience
PMID: 18975148
metasource: Fairsharing.org
version: FAIRsharing.org: NIFSTD; Neuroscience Information Framework Standard Ontology; DOI: https://doi.org/10.25504/FAIRsharing.vgw1m6; Last edited: Nov. 26, 2019, 11:03 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
http://neuinfo.org/about/publications.shtm
metasource: Biontology / Bioportalversion: 3.1 - January 15, 2018 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/NIFSTD
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The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience
PubMed citations: 80.
80 articles citing: The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience
The SPARC DRC: Building a Resource for the Autonomic Nervous System Community. PMID:34248680
An open-source framework for neuroscience metadata management applied to digital reconstructions of neuronal morphology. PMID:32219575
Neuron Names: A Gene- and Property-Based Name Format, With Special Reference to Cortical Neurons. PMID:30949034
An ontology-based search engine for digital reconstructions of neuronal morphology. PMID:28337675
Hierarchical Event Descriptors (HED): Semi-Structured Tagging for Real-World Events in Large-Scale EEG. PMID:27799907
Name-calling in the hippocampus (and beyond): coming to terms with neuron types and properties. PMID:27747821
Automated Neuroanatomical Relation Extraction: A Linguistically Motivated Approach with a PVT Connectivity Graph Case Study. PMID:27708573
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. PMID:27377652
Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature. PMID:26730820
Terminology development towards harmonizing multiple clinical neuroimaging research repositories. PMID:26688838
The NIDDK Information Network: A Community Portal for Finding Data, Materials, and Tools for Researchers Studying Diabetes, Digestive, and Kidney Diseases. PMID:26393351
Text mining for neuroanatomy using WhiteText with an updated corpus and a new web application. PMID:26052282
Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources. PMID:25018728
Neuroinformatics challenges to the structural, connectomic, functional and electrophysiological multimodal imaging of human traumatic brain injury. PMID:24616696
Automated annotation of functional imaging experiments via multi-label classification. PMID:24409112
Neuroanatomical domain of the foundational model of anatomy ontology. PMID:24398054
The neurological disease ontology. PMID:24314207
A neuroinformatics of brain modeling and its implementation in the Brain Operation Database BODB. PMID:24234915
Modeling the autism spectrum disorder phenotype. PMID:24163114
Human neuroimaging as a "Big Data" science. PMID:24113873
The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments. PMID:24093723
NeuroLex.org: an online framework for neuroscience knowledge. PMID:24009581
Faceted visualization of three dimensional neuroanatomy by combining ontology with faceted search. PMID:24006207
Query enhancement through the practical application of ontology: the IEDB and OBI. PMID:23734660
A knowledge based approach to matching human neurodegenerative disease and animal models. PMID:23717278
Brede tools and federating online neuroinformatics databases. PMID:23666785
Quantitative imaging biomarker ontology (QIBO) for knowledge representation of biomedical imaging biomarkers. PMID:23589184
A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm. PMID:23571850
OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows. PMID:23286517
An ontology-based segmentation scheme for tracking postnatal changes in the developing rodent brain with MRI. PMID:23246176
The UCLA multimodal connectivity database: a web-based platform for brain connectivity matrix sharing and analysis. PMID:23226127
Discovering relations between mind, brain, and mental disorders using topic mapping. PMID:23071428
Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach. PMID:22737162
PyXNAT: XNAT in Python. PMID:22654752
Electronic data capture, representation, and applications for neuroimaging. PMID:22586393
An ontological approach to describing neurons and their relationships. PMID:22557965
Ontological labels for automated location of anatomical shape differences. PMID:22490168
Practical management of heterogeneous neuroimaging metadata by global neuroimaging data repositories. PMID:22470336
A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. PMID:22434839
Research resources: curating the new eagle-i discovery system. PMID:22434835
Uberon, an integrative multi-species anatomy ontology. PMID:22293552
Comparison of SNOMED CT versus Medcin terminology concept coverage for mild Traumatic Brain Injury. PMID:22195156
Evaluation of semantic-based information retrieval methods in the autism phenotype domain. PMID:22195112
NeuroLOG: sharing neuroimaging data using an ontology-based federated approach. PMID:22195101
Minimal Information for Neural Electromagnetic Ontologies (MINEMO): A standards-compliant method for analysis and integration of event-related potentials (ERP) data. PMID:22180824
Using text mining to link journal articles to neuroanatomical databases. PMID:22120205
Disease Ontology: a backbone for disease semantic integration. PMID:22080554
Large-scale automated histology in the pursuit of connectomes. PMID:22072665
A Bottom-up Approach to Data Annotation in Neurophysiology. PMID:21941477
The internet brain volume database: a public resource for storage and retrieval of volumetric data. PMID:21931990
Knowledge engineering tools for reasoning with scientific observations and interpretations: a neural connectivity use case. PMID:21859449
NeuroNames: an ontology for the BrainInfo portal to neuroscience on the web. PMID:21789500
The cognitive paradigm ontology: design and application. PMID:21643732
Enabling collaborative research using the Biomedical Informatics Research Network (BIRN). PMID:21515543
Challenges and opportunities in mining neuroscience data. PMID:21311009
Neuroscience Data Integration through Mediation: An (F)BIRN Case Study. PMID:21228907
Invertebrate neurophylogeny: suggested terms and definitions for a neuroanatomical glossary. PMID:21062451
Cognitive neuroscience 2.0: building a cumulative science of human brain function. PMID:20884276
Structured digital tables on the Semantic Web: toward a structured digital literature. PMID:20739925
Application of neuroanatomical ontologies for neuroimaging data annotation. PMID:20725521
Modeling biomedical experimental processes with OBI. PMID:20626927
Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes. PMID:20495688
NeuronBank: A Tool for Cataloging Neuronal Circuitry. PMID:20428500
Collating and Curating Neuroanatomical Nomenclatures: Principles and Use of the Brain Architecture Knowledge Management System (BAMS). PMID:20407640
The NIF DISCO Framework: facilitating automated integration of neuroscience content on the web. PMID:20387131
Biomedical informatics and translational medicine. PMID:20187952
The coming of age of the hippocampome. PMID:20127205
Integrating phenotype ontologies across multiple species. PMID:20064205
Ontologies for Neuroscience: What are they and What are they Good for? PMID:19753098
Automated recognition of brain region mentions in neuroscience literature. PMID:19750194
Linguistic processing and classification of semi structured bibliographic data on complementary medicine. PMID:19718447
The International Neuroinformatics Coordinating Facility: evaluating the first years. PMID:19636973
ALE Meta-Analysis Workflows Via the Brainmap Database: Progress Towards A Probabilistic Functional Brain Atlas. PMID:19636392
Approaches to neuroscience data integration. PMID:19505888
Application and evaluation of automated semantic annotation of gene expression experiments. PMID:19376825
The central role of neuroinformatics in the National Academy of Engineering's grandest challenge: reverse engineer the brain. PMID:19140032
Terminology for neuroscience data discovery: multi-tree syntax and investigator-derived semantics. PMID:18958630
Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF). PMID:18958629
Issues in the design of a pilot concept-based query interface for the neuroinformatics information framework. PMID:18953674
The neuroscience information framework: a data and knowledge environment for neuroscience. PMID:18946742 - http://neuinfo.org/about/publications.shtm
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