Neurodata Without Borders: Neurophysiology 2.0
Names
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Neurodata Without Borders: Neurophysiology 2.0
metasource: Fairsharing.org
version: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
N 2.0
metasource: Fairsharing.org
version: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Names
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Neurodata Without Borders: Neurophysiology 2.0
metasource: Fairsharing.orgversion: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
N 2.0
metasource: Fairsharing.orgversion: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
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Neurodata Without Borders: Neurophysiology 2.0
metasource: Fairsharing.orgversion: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
N 2.0
metasource: Fairsharing.orgversion: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
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Neurodata Without Borders: Neurophysiology (NWB:N) 2.0 is a data standard for neurophysiology, that provideds neuroscientists with a common standard to share, archive, use, and build common analysis tools for neurophysiology data. NWB:N 2.0 is designed to store a variety of neurophysiology data, including from intracellular and extracellular electrophysiology experiments, optical physiology experiments, as well as tracking and stimulus data.
Description
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Neurodata Without Borders: Neurophysiology (NWB:N) 2.0 is a data standard for neurophysiology, that provideds neuroscientists with a common standard to share, archive, use, and build common analysis tools for neurophysiology data. NWB:N 2.0 is designed to store a variety of neurophysiology data, including from intracellular and extracellular electrophysiology experiments, optical physiology experiments, as well as tracking and stimulus data.
metasource: Fairsharing.orgversion: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Webpage:
https://www.nwb.org/nwb-neurophysiology/Webpage
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https://www.nwb.org/nwb-neurophysiology/
metasource: Fairsharing.orgversion: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Licence:
Name: BSD-3-Clause License (Modified BSD License) (New BSD License)Licence name
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BSD-3-Clause License (Modified BSD License) (New BSD License)
metasource: Fairsharing.orgversion: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Licence URL
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https://opensource.org/licenses/BSD-3-Clause
metasource: Fairsharing.orgversion: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications:
Publications
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Neurodata Without Borders: Creating a Common Data Format for Neurophysiology
PMID: 26590340
metasource: Fairsharing.org
version: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
https://doi.org/10.1101/523035
metasource: Fairsharing.org
version: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications
More detailed information about this field from each metasource.
Neurodata Without Borders: Creating a Common Data Format for Neurophysiology
PMID: 26590340
metasource: Fairsharing.org
version: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
https://doi.org/10.1101/523035
metasource: Fairsharing.orgversion: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
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Neurodata Without Borders: Creating a Common Data Format for Neurophysiology
PubMed citations: 54.
54 articles citing: Neurodata Without Borders: Creating a Common Data Format for Neurophysiology
Metadata Framework to Support Deployment of Digital Health Technologies in Clinical Trials in Parkinson's Disease. PMID:35336307
ProbeInterface: A Unified Framework for Probe Handling in Extracellular Electrophysiology. PMID:35242020
Linking Brain Structure, Activity, and Cognitive Function through Computation. PMID:35217544
NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments. PMID:35074827
The Neuroscience Experiments System (NES)-A Software Tool to Manage Experimental Data and Its Provenance. PMID:35069167
International data governance for neuroscience. PMID:34914921
Mesmerize is a dynamically adaptable user-friendly analysis platform for 2D and 3D calcium imaging data. PMID:34772921
CellExplorer: A framework for visualizing and characterizing single neurons. PMID:34592168
GhostiPy: An Efficient Signal Processing and Spectral Analysis Toolbox for Large Data. PMID:34556557
The EBRAINS NeuroFeatureExtract: An Online Resource for the Extraction of Neural Activity Features From Electrophysiological Data. PMID:34512300
Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org). PMID:34347243
Dataset of cortical activity recorded with high spatial resolution from anesthetized rats. PMID:34267214
Preliminary Minimum Reporting Requirements for In-Vivo Neural Interface Research: I. Implantable Neural Interfaces. PMID:33997788
NeuroIntegrative Connectivity (NIC) Informatics Tool for Brain Functional Connectivity Network Analysis in Cohort Studies. PMID:33936485
SpikeInterface, a unified framework for spike sorting. PMID:33170122
NWB Query Engines: Tools to Search Data Stored in Neurodata Without Borders Format. PMID:33041776
Challenges in Physiological Phenotyping of hiPSC-Derived Neurons: From 2D Cultures to 3D Brain Organoids. PMID:32984317
Profile of Data Sharing in the Clinical Neurosciences. PMID:32968588
RAVE: Comprehensive open-source software for reproducible analysis and visualization of intracranial EEG data. PMID:32920161
Experimental Pipeline (Expipe): A Lightweight Data Management Platform to Simplify the Steps From Experiment to Data Analysis. PMID:32792932
DeepCINAC: A Deep-Learning-Based Python Toolbox for Inferring Calcium Imaging Neuronal Activity Based on Movie Visualization. PMID:32699072
An open-source framework for neuroscience metadata management applied to digital reconstructions of neuronal morphology. PMID:32219575
A NWB-based dataset and processing pipeline of human single-neuron activity during a declarative memory task. PMID:32132545
NeuroChaT: A toolbox to analyse the dynamics of neuronal encoding in freely-behaving rodents in vivo. PMID:32055710
A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex. PMID:31844315
Excitatory and Inhibitory Subnetworks Are Equally Selective during Decision-Making and Emerge Simultaneously during Learning. PMID:31753580
High-throughput microcircuit analysis of individual human brains through next-generation multineuron patch-clamp. PMID:31742558
Integrated open-source software for multiscale electrophysiology. PMID:31653867
Scientist and data architect collaborate to curate and archive an inner ear electrophysiology data collection. PMID:31626635
A Kinetic Map of the Homomeric Voltage-Gated Potassium Channel (Kv) Family. PMID:31481875
MEAnalyzer - a Spike Train Analysis Tool for Multi Electrode Arrays. PMID:31273627
Continuing progress of spike sorting in the era of big data. PMID:30856552
Geppetto: a reusable modular open platform for exploring neuroscience data and models. PMID:30201843
Data management and sharing in neuroimaging: Practices and perceptions of MRI researchers. PMID:30011302
FindSim: A Framework for Integrating Neuronal Data and Signaling Models. PMID:29997492
Recommendations for the Design and Analysis of In Vivo Electrophysiology Studies. PMID:29950453
MEG-BIDS, the brain imaging data structure extended to magnetoencephalography. PMID:29917016
Experimental Directory Structure (Exdir): An Alternative to HDF5 Without Introducing a New File Format. PMID:29706879
NeuroMatic: An Integrated Open-Source Software Toolkit for Acquisition, Analysis and Simulation of Electrophysiological Data. PMID:29670519
Systematic generation of biophysically detailed models for diverse cortical neuron types. PMID:29459718
MEA Viewer: A high-performance interactive application for visualizing electrophysiological data. PMID:29425223
Modeling sources of interlaboratory variability in electrophysiological properties of mammalian neurons. PMID:29357465
An International Laboratory for Systems and Computational Neuroscience. PMID:29268092
Standards for data acquisition and software-based analysis of in vivo electroencephalography recordings from animals. A TASK1-WG5 report of the AES/ILAE Translational Task Force of the ILAE. PMID:29105070
Transcriptomic correlates of neuron electrophysiological diversity. PMID:29069078
Maintenance of persistent activity in a frontal thalamocortical loop. PMID:28467817
Applying an Archetype-Based Approach to Electroencephalography/Event-Related Potential Experiments in the EEGBase Resource. PMID:28428750
Science in the cloud (SIC): A use case in MRI connectomics. PMID:28327935
Spatial Organization of Chromatic Pathways in the Mouse Dorsal Lateral Geniculate Nucleus. PMID:27986926
Methods for Specifying Scientific Data Standards and Modeling Relationships with Applications to Neuroscience. PMID:27867355
Handling Metadata in a Neurophysiology Laboratory. PMID:27486397
Processing and Analysis of Multichannel Extracellular Neuronal Signals: State-of-the-Art and Challenges. PMID:27313507
Neurophysiological analytics for all! Free open-source software tools for documenting, analyzing, visualizing, and sharing using electronic notebooks. PMID:27098025
Reproducibility in Computational Neuroscience Models and Simulations. PMID:27046845 - https://doi.org/10.1101/523035
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brain imaging
metasource: Fairsharing.org
version: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
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brain imaging
metasource: Fairsharing.orgversion: FAIRsharing.org: NWB:N 2.0; Neurodata Without Borders: Neurophysiology 2.0; DOI: https://doi.org/10.25504/FAIRsharing.nPfuTE; Last edited: May 4, 2020, 11:09 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
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