National Microbial Pathogen Data Resource
Names
More detailed information about this field from each metasource.
National Microbial Pathogen Data Resource
metasource: Fairsharing.org
version: FAIRsharing.org: NMPDR; National Microbial Pathogen Data Resource; DOI: https://doi.org/10.25504/FAIRsharing.9k5mbg; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
NMPDR
metasource: Fairsharing.org
version: FAIRsharing.org: NMPDR; National Microbial Pathogen Data Resource; DOI: https://doi.org/10.25504/FAIRsharing.9k5mbg; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
National microbial pathogen
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.433997
nmpdr
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.433997
Names
More detailed information about this field from each metasource.
National Microbial Pathogen Data Resource
metasource: Fairsharing.orgversion: FAIRsharing.org: NMPDR; National Microbial Pathogen Data Resource; DOI: https://doi.org/10.25504/FAIRsharing.9k5mbg; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
NMPDR
metasource: Fairsharing.orgversion: FAIRsharing.org: NMPDR; National Microbial Pathogen Data Resource; DOI: https://doi.org/10.25504/FAIRsharing.9k5mbg; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
National microbial pathogen
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
nmpdr
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
Other names: NMPDR, National microbial pathogen, nmpdr
Names
More detailed information about this field from each metasource.
National Microbial Pathogen Data Resource
metasource: Fairsharing.orgversion: FAIRsharing.org: NMPDR; National Microbial Pathogen Data Resource; DOI: https://doi.org/10.25504/FAIRsharing.9k5mbg; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
NMPDR
metasource: Fairsharing.orgversion: FAIRsharing.org: NMPDR; National Microbial Pathogen Data Resource; DOI: https://doi.org/10.25504/FAIRsharing.9k5mbg; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
National microbial pathogen
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
nmpdr
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
The NMPDR provided curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio; as well as the STD pathogens Chlamydiaceae, Haemophilus, Mycoplasma, Neisseria, Treponema, and Ureaplasma.
Description
More detailed information about this field from each metasource.
The NMPDR provided curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio; as well as the STD pathogens Chlamydiaceae, Haemophilus, Mycoplasma, Neisseria, Treponema, and Ureaplasma.
metasource: Fairsharing.orgversion: FAIRsharing.org: NMPDR; National Microbial Pathogen Data Resource; DOI: https://doi.org/10.25504/FAIRsharing.9k5mbg; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Curated annotations in an environment for comparative analysis of genomes and biological subsystems, with an emphasis on the food-borne pathogens Campylobacter, Listeria, Staphylococcus, Streptococcus, and Vibrio as well as the STD pathogens Chlamydiaceae, Haemophilus, Mycoplasma, Neisseria, Treponema, and Ureaplasma.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
Webpage:
http://www.nmpdr.orgWebpage
More detailed information about this field from each metasource.
http://www.nmpdr.org
metasource: Fairsharing.orgversion: FAIRsharing.org: NMPDR; National Microbial Pathogen Data Resource; DOI: https://doi.org/10.25504/FAIRsharing.9k5mbg; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.433997
Publications:
Publications
More detailed information about this field from each metasource.
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation
PMID: 17145713
metasource: Fairsharing.org
version: FAIRsharing.org: NMPDR; National Microbial Pathogen Data Resource; DOI: https://doi.org/10.25504/FAIRsharing.9k5mbg; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gkl947
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.433997
Publications
More detailed information about this field from each metasource.
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation
PMID: 17145713
metasource: Fairsharing.org
version: FAIRsharing.org: NMPDR; National Microbial Pathogen Data Resource; DOI: https://doi.org/10.25504/FAIRsharing.9k5mbg; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
http://dx.doi.org/10.1093/nar/gkl947
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
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The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation
PubMed citations: 47.
47 articles citing: The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation
Simple, Reliable, and Time-Efficient Manual Annotation of Bacterial Genomes with MAISEN. PMID:33961227
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. PMID:31667520
Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura). PMID:26994086
Metagenomic-based study of the phylogenetic and functional gene diversity in Galápagos land and marine iguanas. PMID:25524569
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). PMID:24293654
PATRIC, the bacterial bioinformatics database and analysis resource. PMID:24225323
Comparative evaluation of rumen metagenome community using qPCR and MG-RAST. PMID:24025701
Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes. PMID:23250431
Learning virulent proteins from integrated query networks. PMID:23198735
Rapid phylogenetic and functional classification of short genomic fragments with signature peptides. PMID:22925230
Directed evaluation of enterotoxigenic Escherichia coli autotransporter proteins as putative vaccine candidates. PMID:22163060
Effects of amino acid supplementation on porin expression and ToxR levels in Vibrio cholerae. PMID:22144480
Streptococcus pyogenes in human plasma: adaptive mechanisms analyzed by mass spectrometry-based proteomics. PMID:22117078
Functional Annotation Analytics of Rhodopseudomonas palustris Genomes. PMID:22084572
Genome wide expression profiling reveals suppression of host defence responses during colonisation by Neisseria meningitides but not N. lactamica. PMID:22028815
Discovery of a gene involved in a third bacterial protoporphyrinogen oxidase activity through comparative genomic analysis and functional complementation. PMID:21642412
Genomic signatures of strain selection and enhancement in Bacillus atrophaeus var. globigii, a historical biowarfare simulant. PMID:21464989
Defense against cannibalism: the SdpI family of bacterial immunity/signal transduction proteins. PMID:20563570
Accessing the SEED genome databases via Web services API: tools for programmers. PMID:20546611
Discovery and Characterization of HemQ: an essential heme biosynthetic pathway component. PMID:20543190
Comparative genomics of the family Vibrionaceae reveals the wide distribution of genes encoding virulence-associated proteins. PMID:20537180
Identifying essential genes in bacterial metabolic networks with machine learning methods. PMID:20438628
Microevolution of group A streptococci in vivo: capturing regulatory networks engaged in sociomicrobiology, niche adaptation, and hypervirulence. PMID:20418946
Design and utilization of epitope-based databases and predictive tools. PMID:20213141
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology. PMID:19955237
FIGfams: yet another set of protein families. PMID:19762480
The novel polysaccharide deacetylase homologue Pdi contributes to virulence of the aquatic pathogen Streptococcus iniae. PMID:19762441
Achievements and new knowledge unraveled by metagenomic approaches. PMID:19760178
Efficient oligonucleotide probe selection for pan-genomic tiling arrays. PMID:19758451
A comparative genomics, network-based approach to understanding virulence in Vibrio cholerae. PMID:19666715
The Thermoplasma acidophilum LplA-LplB complex defines a new class of bipartite lipoate-protein ligases. PMID:19520844
Regulation of expression of the Haemophilus ducreyi LspB and LspA2 proteins by CpxR. PMID:19451237
Nicotinamide mononucleotide synthetase is the key enzyme for an alternative route of NAD biosynthesis in Francisella tularensis. PMID:19204287
Genomic-scale prioritization of drug targets: the TDR Targets database. PMID:18927591
Strepto-DB, a database for comparative genomics of group A (GAS) and B (GBS) streptococci, implemented with the novel database platform 'Open Genome Resource' (OGeR). PMID:18854354
RNomics and Modomics in the halophilic archaea Haloferax volcanii: identification of RNA modification genes. PMID:18844986
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. PMID:18803844
Mining the genomes of plant pathogenic bacteria: how not to drown in gigabases of sequence. PMID:18705888
Streptococcus iniae M-like protein contributes to virulence in fish and is a target for live attenuated vaccine development. PMID:18665241
Vibrio cholerae VciB promotes iron uptake via ferrous iron transporters. PMID:18586940
Large-scale transposon mutagenesis of Mycoplasma pulmonis. PMID:18452587
Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artefactual expansions. PMID:18366731
The RAST Server: rapid annotations using subsystems technology. PMID:18261238
An in vivo expression technology screen for Vibrio cholerae genes expressed in human volunteers. PMID:17986616
Identification of genes encoding tRNA modification enzymes by comparative genomics. PMID:17673083
Characterization of a TIR-like protein from Paracoccus denitrificans. PMID:17362878
The capsule polysaccharide structure and biogenesis for non-O1 Vibrio cholerae NRT36S: genes are embedded in the LPS region. PMID:17362509 - http://dx.doi.org/10.1093/nar/gkl947
Tags:
Tags
More detailed information about this field from each metasource.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: NMPDR; National Microbial Pathogen Data Resource; DOI: https://doi.org/10.25504/FAIRsharing.9k5mbg; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
pathogen
metasource: Fairsharing.org
version: FAIRsharing.org: NMPDR; National Microbial Pathogen Data Resource; DOI: https://doi.org/10.25504/FAIRsharing.9k5mbg; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.433997
comparative genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:36:16.433997
Tags
More detailed information about this field from each metasource.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: NMPDR; National Microbial Pathogen Data Resource; DOI: https://doi.org/10.25504/FAIRsharing.9k5mbg; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
pathogen
metasource: Fairsharing.orgversion: FAIRsharing.org: NMPDR; National Microbial Pathogen Data Resource; DOI: https://doi.org/10.25504/FAIRsharing.9k5mbg; Last edited: Jan. 8, 2019, 1:16 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
comparative genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:36:16.433997
genome pathogen model organisms comparative genomics
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