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NIHR IBD BioResource: SNP imputation data

SNP chip data can be used to impute many of the (non-rare) SNPs not included on the chips. The NIHR IBD BioResource is using a modified version of the UK Biobank protocol to improve the options for recall.

Description

More detailed information about this field from each metasource.

SNP chip data can be used to impute many of the (non-rare) SNPs not included on the chips. The NIHR IBD BioResource is using a modified version of the UK Biobank protocol to improve the options for recall.

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Webpage:

https://www.healthdatagateway.org/dataset/12d62b02-2167-407d-acdb-6ddb9d251d36

Webpage

More detailed information about this field from each metasource.

https://www.healthdatagateway.org/dataset/12d62b02-2167-407d-acdb-6ddb9d251d36

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Licence:

Name: HDR UK Innovation Gateway Access

Licence name

More detailed information about this field from each metasource.

HDR UK Innovation Gateway Access

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

URL: https://www.hdruk.ac.uk/infrastructure/gateway/terms-and-conditions/

Licence URL

More detailed information about this field from each metasource.

https://www.hdruk.ac.uk/infrastructure/gateway/terms-and-conditions/

metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Tags:

Tags
More detailed information about this field from each metasource.

IBD
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Crohn's
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

colitis
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

recall
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

SNP
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

Imputation
metasource: HDR UK
version: extracted_at: 2022-09-05T08:28:24.125862

ibd crohn's colitis recall snp imputation

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NIHR BioResource: SNP imputation data

SNP chip data can be used to impute many of the (non-rare) SNPs not included on the chips. The NIHR BioResource is using a modified version of the UK Biobank protocol to improve the options for recal ...

NIHR IBD BioResource: SNP chip data

In order to do recall by genotype, participants have their DNA tested using one the SNP chip arrays from eg. Illumina and Affymetrix (now Thermosfisher). The current iteration is the UK Biobank v2.1 ...

NIHR IBD BioResource: Demographic

The NIHR IBD BioResource acquires broad demographics – e.g. age, sex, ethnicity - from participants at recruitment. This is used to pre-screen or match participants when inviting them to take part in ...

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NIHR IBD BioResource: Sample holding

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NIHR BioResource: SNP chip data

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The NIHR BioResource acquires contact details - name, address, email address, phone/mobile number - from participants at recruitment. This is used to recontact participants to invite them to take part ...

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The NIHR BioResource records consent dates and versions for each and every participant consent event. We also record use of opt-ins and opt-outs including pre-GDPR. This permits us to manage data rel ...

NIHR BioResource: Case report form

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine