Minimal Information About a Phylogenetic Analysis
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Minimal Information About a Phylogenetic Analysis
metasource: Fairsharing.org
version: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MIAPA
metasource: Fairsharing.org
version: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
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Minimal Information About a Phylogenetic Analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MIAPA
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Names
More detailed information about this field from each metasource.
Minimal Information About a Phylogenetic Analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
MIAPA
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
The MIAPA (minimum information about a phylogenetic analysis) checklist details the list of metadata necessary for researchers to evaluate or reuse a published phylogeny.
Description
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The MIAPA (minimum information about a phylogenetic analysis) checklist details the list of metadata necessary for researchers to evaluate or reuse a published phylogeny.
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Webpage:
http://www.evoio.org/wiki/MIAPAWebpage
More detailed information about this field from each metasource.
http://www.evoio.org/wiki/MIAPA
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA)
PMID: 16901231
metasource: Fairsharing.org
version: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications
More detailed information about this field from each metasource.
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA)
PMID: 16901231
metasource: Fairsharing.org
version: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
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Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA)
PubMed citations: 29.
29 articles citing: Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA)
Metadata harmonization-Standards are the key for a better usage of omics data for integrative microbiome analysis. PMID:35751093
When mycologists describe new species, not all relevant information is provided (clearly enough). PMID:32982558
JPhyloIO: a Java library for event-based reading and writing of different phylogenetic file formats through a common interface. PMID:31331268
Context Is Everything: Harmonization of Critical Food Microbiology Descriptors and Metadata for Improved Food Safety and Surveillance. PMID:28694792
RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language. PMID:27235697
Synthesis of phylogeny and taxonomy into a comprehensive tree of life. PMID:26385966
ReproPhylo: An Environment for Reproducible Phylogenomics. PMID:26335558
The dawn of open access to phylogenetic data. PMID:25343725
An evolutionary perspective on leaf economics: phylogenetics of leaf mass per area in vascular plants. PMID:25165520
Best practices for data sharing in phylogenetic research. PMID:24987572
Advancing data reuse in phyloinformatics using an ontology-driven Semantic Web approach. PMID:24565381
A tale of two drug targets: the evolutionary history of BACE1 and BACE2. PMID:24381583
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient. PMID:23668630
Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis. PMID:23088596
A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica. PMID:22958331
Bio.Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython. PMID:22909249
TreeSnatcher plus: capturing phylogenetic trees from images. PMID:22624611
Systematics Agenda 2020: the mission evolves. PMID:22492540
NeXML: rich, extensible, and verifiable representation of comparative data and metadata. PMID:22357728
Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop. PMID:21304730
Advancing standards for bioinformatics activities: persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi). PMID:21143811
Standardization and omics science: technical and social dimensions are inseparable and demand symmetrical study. PMID:20455752
BioTorrents: a file sharing service for scientific data. PMID:20418944
The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources. PMID:19965766
phyloXML: XML for evolutionary biology and comparative genomics. PMID:19860910
Extended Newick: it is time for a standard representation of phylogenetic networks. PMID:19077301
Problematica old and new. PMID:18192184
PhylomeDB: a database for genome-wide collections of gene phylogenies. PMID:17962297
GeneTrees: a phylogenomics resource for prokaryotes. PMID:17151073
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dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
data transformation
metasource: Fairsharing.org
version: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
data transformation
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: MIAPA; Minimal Information About a Phylogenetic Analysis; DOI: https://doi.org/10.25504/FAIRsharing.ca48xs; Last edited: Aug. 5, 2019, 1:38 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
dna sequences data transformation dna
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