International Human Epigenome Consortium Data Portal
Names
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International Human Epigenome Consortium Data Portal
metasource: Fairsharing.org
version: None
metasource: re3data.org
version: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
IHEC Data Portal
metasource: Fairsharing.org
version: None
metasource: re3data.org
version: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
Names
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International Human Epigenome Consortium Data Portal
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
IHEC Data Portal
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
International Human Epigenome Consortium Data Portal
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
IHEC Data Portal
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
The International Human Epigenome Consortium (IHEC) coordinates the production of reference epigenome maps through the characterization of the regulome, methylome, and transcriptome from a wide range of tissues and cell types. The IHEC Data Portal provides discovery, visualization, analysis, download, and sharing of epigenomics data, is the official source to navigate through IHEC datasets, and represents a strategy for unifying the distributed data produced by international research consortia.
Description
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The International Human Epigenome Consortium (IHEC) coordinates the production of reference epigenome maps through the characterization of the regulome, methylome, and transcriptome from a wide range of tissues and cell types. The IHEC Data Portal provides discovery, visualization, analysis, download, and sharing of epigenomics data, is the official source to navigate through IHEC datasets, and represents a strategy for unifying the distributed data produced by international research consortia.
metasource: Fairsharing.orgversion: None
The International Human Epigenome Consortium (IHEC) makes available comprehensive sets of reference epigenomes relevant to health and disease. The IHEC Data Portal can be used to view, search and download the data already released by the different IHEC-associated projects.
metasource: re3data.orgversion: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
Webpage:
https://epigenomesportal.ca/ihec/help.htmlWebpage
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https://epigenomesportal.ca/ihec/help.html
metasource: Fairsharing.orgversion: None
https://epigenomesportal.ca/ihec/
metasource: re3data.orgversion: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
Licence:
Name: IHEC Data Portal Terms and ConditionsLicence name
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IHEC Data Portal Terms and Conditions
metasource: Fairsharing.orgversion: None
Copyrights
metasource: re3data.orgversion: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
Licence URL
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https://epigenomesportal.ca/ihec/about.html#terms
metasource: Fairsharing.orgversion: None
metasource: re3data.org
version: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
Publications:
Publications
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The International Human Epigenome Consortium Data Portal
PMID: 27863956
metasource: Fairsharing.org
version: None
Publications
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The International Human Epigenome Consortium Data Portal
PMID: 27863956
metasource: Fairsharing.org
version: None
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The International Human Epigenome Consortium Data Portal
PubMed citations: 63.
63 articles citing: The International Human Epigenome Consortium Data Portal
Contribution of septins to human platelet structure and function. PMID:35832887
Characterizing collaborative transcription regulation with a graph-based deep learning approach. PMID:35666736
Machine learning: its challenges and opportunities in plant system biology. PMID:35575915
Potential role of KRAB-ZFP binding and transcriptional states on DNA methylation of retroelements in human male germ cells. PMID:35315771
Prediction of transcription factors associated with DNA demethylation during human cellular development. PMID:35142952
Histone acetylome-wide associations in immune cells from individuals with active Mycobacterium tuberculosis infection. PMID:35102304
Cell-free DNA profiling informs all major complications of hematopoietic cell transplantation. PMID:35058359
TIGER: The gene expression regulatory variation landscape of human pancreatic islets. PMID:34644572
Integrative Epigenome Map of the Normal Human Prostate Provides Insights Into Prostate Cancer Predisposition. PMID:34513844
Recommendations for the FAIRification of genomic track metadata. PMID:34249331
Contribution of genetic and epigenetic changes to escape from X-chromosome inactivation. PMID:34187555
Whole-genome sequencing reveals new Alzheimer's disease-associated rare variants in loci related to synaptic function and neuronal development. PMID:33797837
Molecular and computational approaches to map regulatory elements in 3D chromatin structure. PMID:33741028
A plug and play microfluidic platform for standardized sensitive low-input chromatin immunoprecipitation. PMID:33707229
Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing. PMID:33597016
Epigenetic signatures in cancer: proper controls, current challenges and the potential for clinical translation. PMID:33568205
Deciphering the genetic code of DNA methylation. PMID:33432324
UniPath: a uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles. PMID:33275158
SVFX: a machine learning framework to quantify the pathogenicity of structural variants. PMID:33168059
HMST-Seq-Analyzer: A new python tool for differential methylation and hydroxymethylation analysis in various DNA methylation sequencing data. PMID:33163148
Ultrafast and scalable variant annotation and prioritization with big functional genomics data. PMID:33060171
Ten simple rules for annotating sequencing experiments. PMID:33017400
Computational methods and next-generation sequencing approaches to analyze epigenetics data: Profiling of methods and applications. PMID:32941995
Multiomics data integration unveils core transcriptional regulatory networks governing cell-type identity. PMID:32839455
Dysregulation of cancer genes by recurrent intergenic fusions. PMID:32631391
Seq-ing answers: Current data integration approaches to uncover mechanisms of transcriptional regulation. PMID:32612756
cfNOMe - A single assay for comprehensive epigenetic analyses of cell-free DNA. PMID:32580754
Unravelling the complex genetics of common kidney diseases: from variants to mechanisms. PMID:32514149
Complexities of Understanding Function from CKD-Associated DNA Variants. PMID:32513823
Molecular networks in Network Medicine: Development and applications. PMID:32307915
Completing the ENCODE3 compendium yields accurate imputations across a variety of assays and human biosamples. PMID:32228713
epiCOLOC: Integrating Large-Scale and Context-Dependent Epigenomics Features for Comprehensive Colocalization Analysis. PMID:32117461
The Promises and Challenges of Toxico-Epigenomics: Environmental Chemicals and Their Impacts on the Epigenome. PMID:31950866
Mechanisms of tissue and cell-type specificity in heritable traits and diseases. PMID:31913361
The ENCODE Portal as an Epigenomics Resource. PMID:31751002
Reverse gene-environment interaction approach to identify variants influencing body-mass index in humans. PMID:31538139
Druggable Transcriptional Networks in the Human Neurogenic Epigenome. PMID:31530573
Tales from topographic oceans: topologically associated domains and cancer. PMID:31505466
A cell-free DNA metagenomic sequencing assay that integrates the host injury response to infection. PMID:31451660
WashU Epigenome Browser update 2019. PMID:31165883
Making Sense of the Epigenome Using Data Integration Approaches. PMID:30837884
Orientation-aware plasma cell-free DNA fragmentation analysis in open chromatin regions informs tissue of origin. PMID:30808726
A genetic variant associated with multiple sclerosis inversely affects the expression of CD58 and microRNA-548ac from the same gene. PMID:30730892
Machine Learning for Integrating Data in Biology and Medicine: Principles, Practice, and Opportunities. PMID:30467459
From association to mechanism in complex disease genetics: the role of the 3D genome. PMID:30268153
BRWD1 orchestrates epigenetic landscape of late B lymphopoiesis. PMID:30250168
Candidate genes linking maternal nutrient exposure to offspring health via DNA methylation: a review of existing evidence in humans with specific focus on one-carbon metabolism. PMID:30137462
The epiGenomic Efficient Correlator (epiGeEC) tool allows fast comparison of user datasets with thousands of public epigenomic datasets. PMID:30052804
Entering the post-epigenomic age: back to epigenetics. PMID:29593118
Enrichment analysis with EpiAnnotator. PMID:29329372
Panomics for Precision Medicine. PMID:29217119
Neuroimaging genomics in psychiatry-a translational approach. PMID:29179742
The Encyclopedia of DNA elements (ENCODE): data portal update. PMID:29126249
DBTSS/DBKERO for integrated analysis of transcriptional regulation. PMID:29126224
Vitamin D Receptor Signaling and Cancer. PMID:29080633
New insights into the epigenetics of inflammatory rheumatic diseases. PMID:28905855
Translational Perspective on Epigenetics in Cardiovascular Disease. PMID:28750703
Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function. PMID:28747224
Early Detection of Cancer in Blood Using Single-Cell Analysis: A Proposal. PMID:28587830
Non-coding RNAs in cardiovascular diseases: diagnostic and therapeutic perspectives. PMID:28430919
DeepBlueR: large-scale epigenomic analysis in R. PMID:28334349
Conserved expression of transposon-derived non-coding transcripts in primate stem cells. PMID:28245871
Clinical implications of genome-wide DNA methylation studies in acute myeloid leukemia. PMID:28153026
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gene expression data
metasource: Fairsharing.org
version: None
epigenetics
metasource: re3data.org
version: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
epigenomics
metasource: re3data.org
version: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
health
metasource: re3data.org
version: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
human
metasource: re3data.org
version: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
mouse
metasource: re3data.org
version: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
Tags
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gene expression data
metasource: Fairsharing.orgversion: None
epigenetics
metasource: re3data.orgversion: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
epigenomics
metasource: re3data.orgversion: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
health
metasource: re3data.orgversion: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
human
metasource: re3data.orgversion: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
mouse
metasource: re3data.orgversion: re3data.org: IHEC Data Portal; editing status 2022-10-22; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJNAF last accessed: 2022-11-04
gene expression epigenetics epigenomics health human mouse
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