HumanMetagenomeDB
Names
More detailed information about this field from each metasource.
HumanMetagenomeDB
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:44.499064
humanmetagenomedb
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:44.499064
Names
More detailed information about this field from each metasource.
HumanMetagenomeDB
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:44.499064
humanmetagenomedb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:44.499064
Other names: humanmetagenomedb
Names
More detailed information about this field from each metasource.
HumanMetagenomeDB
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:44.499064
humanmetagenomedb
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:44.499064
Curated and standardized metadata for human metagenomes
Description
More detailed information about this field from each metasource.
Curated and standardized metadata for human metagenomes
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
A public repository of curated and standardized metadata for human metagenomes. Metagenomics became a standard strategy to comprehend the functional potential of microbial communities, including the human microbiome. Currently, the number of metagenomes in public repositories is increasing exponentially. The Sequence Read Archive (SRA) and the MG-RAST are the two main repositories for metagenomic data. These databases allow scientists to reanalyze samples and explore new hypotheses. However, mining samples from them can be a limiting factor, since the metadata available in these repositories is often misannotated, misleading, and decentralized, creating an overly complex environment for sample reanalysis. The main goal of the HumanMetagenomeDB is to simplify the identification and use of public human metagenomes of interest. HumanMetagenomeDB version 1.0 contains metadata of 69 822 metagenomes
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:44.499064
Webpage:
https://webapp.ufz.de/hmgdb/Webpage
More detailed information about this field from each metasource.
https://webapp.ufz.de/hmgdb/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:44.499064
https://webapp.ufz.de/hmdb/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
PMID: 33221926
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:44.499064
https://doi.org/10.1093/nar/gkaa1031
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
PMID: 33221926
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:44.499064
https://doi.org/10.1093/nar/gkaa1031
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
PubMed citations: 2.
2 articles citing: HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
ADDAGMA: A database for domestic animal gut microbiome atlas. PMID:35222847
The 2021 Nucleic Acids Research database issue and the online molecular biology database collection. PMID:33396976 - https://doi.org/10.1093/nar/gkaa1031
Tags:
Tags
More detailed information about this field from each metasource.
metagenomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:44.499064
microbial ecology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:44.499064
metagenomic sequencing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:44.499064
sample collections
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:44.499064
Tags
More detailed information about this field from each metasource.
metagenomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:44.499064
microbial ecology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:44.499064
metagenomic sequencing
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:44.499064
sample collections
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:44.499064
metagenomics microbial ecology metagenomic sequencing sample collections
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