Genome Biology Ontology Language
Names
More detailed information about this field from each metasource.
Genome Biology Ontology Language
metasource: Fairsharing.org
version: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
GBOL
metasource: Fairsharing.org
version: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GBOL
metasource: Biontology / Bioportal
version: 1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GBOL
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:51.504758
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:51.504758
Names
More detailed information about this field from each metasource.
Genome Biology Ontology Language
metasource: Fairsharing.orgversion: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
GBOL
metasource: Fairsharing.orgversion: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GBOL
metasource: Biontology / Bioportal
version: 1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GBOL
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:51.504758
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:51.504758
Names
More detailed information about this field from each metasource.
Genome Biology Ontology Language
metasource: Fairsharing.orgversion: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
GBOL
metasource: Fairsharing.orgversion: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GBOL
metasource: Biontology / Bioportal
version: 1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GBOL
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:51.504758
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:51.504758
To enable interoperability of genome annotations, we have developed the Genome Biology Ontology Language (GBOL) and associated stack (GBOL stack). GBOL is provenance centered and provides a consistent representation of genome derived automated predictions linked to the dataset-wise and element-wise provenance of predicted elements. GBOL is modular in design, extendible and is integrated with existing ontologies. Interoperability of linked data can only be guaranteed through the application of tools that provide the means for a continuous validation of generated linked data. The GBOL stack enforces consistency within and between the OWL and ShEx definitions. Genome wide large scale functional analyses can then easily be achieved using SPARQL queries. Additionally, modules have been developed to serialize the linked data (RDF) and to generate a plain text format files with integrated support for data provenance that that mimic the indentation structure of GenBank and EMBL formats.
Description
More detailed information about this field from each metasource.
To enable interoperability of genome annotations, we have developed the Genome Biology Ontology Language (GBOL) and associated stack (GBOL stack). GBOL is provenance centered and provides a consistent representation of genome derived automated predictions linked to the dataset-wise and element-wise provenance of predicted elements. GBOL is modular in design, extendible and is integrated with existing ontologies. Interoperability of linked data can only be guaranteed through the application of tools that provide the means for a continuous validation of generated linked data. The GBOL stack enforces consistency within and between the OWL and ShEx definitions. Genome wide large scale functional analyses can then easily be achieved using SPARQL queries. Additionally, modules have been developed to serialize the linked data (RDF) and to generate a plain text format files with integrated support for data provenance that that mimic the indentation structure of GenBank and EMBL formats.
metasource: Fairsharing.orgversion: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Genome Biology Ontology Language (GBOL)
metasource: Biontology / Bioportalversion: 1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GBOL
The Empusa code generator and its application to GBOL. GBOL; Genome Biology Ontology Language. To enable interoperability of genome annotations, we have developed the Genome Biology Ontology Language (GBOL) and associated stack (GBOL stack). A group is a collection of several projects. If you organize your projects under a group, it works like a folder.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:51.504758
Webpage:
http://gbol.lifeWebpage
More detailed information about this field from each metasource.
http://gbol.life
metasource: Fairsharing.orgversion: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
metasource: Biontology / Bioportal
version: 1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GBOL
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:51.504758
Licence:
Name: MIT LicenceLicence name
More detailed information about this field from each metasource.
MIT Licence
metasource: Fairsharing.orgversion: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Licence URL
More detailed information about this field from each metasource.
https://opensource.org/licenses/mit
metasource: Fairsharing.orgversion: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation
PMID: 31685817
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:51.504758
http://dx.doi.org/10.1101/184747
metasource: Fairsharing.org
version: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
https://www.biorxiv.org/content/early/2017/09/05/184747
metasource: Biontology / Bioportal
version: 1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GBOL
Publications
More detailed information about this field from each metasource.
The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation
PMID: 31685817
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:51.504758
http://dx.doi.org/10.1101/184747
metasource: Fairsharing.orgversion: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
https://www.biorxiv.org/content/early/2017/09/05/184747
metasource: Biontology / Bioportalversion: 1 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/GBOL
-
The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation
PubMed citations: 4.
4 articles citing: The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation
Galactocerebroside biosynthesis pathways of Mycoplasma species: an antigen triggering Guillain-Barré-Stohl syndrome. PMID:33773097
Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential. PMID:33541265
Genome-scale metabolic modeling underscores the potential of Cutaneotrichosporon oleaginosus ATCC 20509 as a cell factory for biofuel production. PMID:33407779
NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis. PMID:32117417 - http://dx.doi.org/10.1101/184747
- https://www.biorxiv.org/content/early/2017/09/05/184747
Tags:
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.org
version: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
ontology and terminology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:51.504758
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:51.504758
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:51.504758
cell biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:51.504758
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: GBOL; Genome Biology Ontology Language; DOI: https://doi.org/10.25504/FAIRsharing.sbbbf6; Last edited: Jan. 8, 2019, 1:40 p.m.; Last accessed: Jan 03 2022 7:12 p.m.
ontology and terminology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:51.504758
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:51.504758
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:51.504758
cell biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:29:51.504758
genome ontology and terminology model organisms genomics cell biology
Need help integrating and/or managing biomedical data?