GWASkb

We have built an information extraction system called GWASkb that parses the biomedical literature to automatically extract associations between traits and genomic variants that have been discovered via genome-wide association studies (GWAS) of large case/control cohorts. The resulting database has been made accessible through this interactive website.

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A machine-compiled database of genome-wide association studies
PMID: 31350405

metasource: BiŌkeanós-Medsourcing
version: 0.0.1:2022-11-04T13:34:25.975929

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• A machine-compiled database of genome-wide association studies PubMed citations: 6.

  6 articles citing: A machine-compiled database of genome-wide association studies

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  HLA-SPREAD: a natural language processing based resource for curating HLA association from PubMed abstracts. PMID:34991484

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  GPCards: An integrated database of genotype-phenotype correlations in human genetic diseases. PMID:33868597

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  Ontology-driven weak supervision for clinical entity classification in electronic health records. PMID:33795682

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  GenomeChronicler: The Personal Genome Project UK Genomic Report Generator Pipeline. PMID:33193602

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  Snorkel: rapid training data creation with weak supervision. PMID:32214778

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  LitGen: Genetic Literature Recommendation Guided by Human Explanations. PMID:31797587