GOMCL
Other names: pub2tools2020__gomcl
A toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions. GOMCL is a tool to cluster and extract summarized associations of Gene Ontology based functions in omics data. It clusters GO terms using MCL based on overlapping ratios, OC (Overlap coefficient) or JC (Jaccard coefficient). The resulting clusters can be further analyzed and separated into sub-clusters using a second script, GOMCL-sub. This tool helps researchers to reduce time spent on manual curation of large lists of GO terms and minimize biases introduced by shared GO terms in data interpretation.
Description
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A toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions. GOMCL is a tool to cluster and extract summarized associations of Gene Ontology based functions in omics data. It clusters GO terms using MCL based on overlapping ratios, OC (Overlap coefficient) or JC (Jaccard coefficient). The resulting clusters can be further analyzed and separated into sub-clusters using a second script, GOMCL-sub. This tool helps researchers to reduce time spent on manual curation of large lists of GO terms and minimize biases introduced by shared GO terms in data interpretation.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:53.899014
Webpage:
http://www.lsugenomics.orgWebpage
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Publications:
Publications
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GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
PMID: 32272889
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:53.899014
Publications
More detailed information about this field from each metasource.
GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
PMID: 32272889
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:53.899014
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GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
PubMed citations: 4.
4 articles citing: GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
LPS Administration Impacts Glial Immune Programs by Alternative Splicing. PMID:35204777
GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data. PMID:34949163
Pathway analysis for genome-wide genetic variation data: Analytic principles, latest developments, and new opportunities. PMID:33896739
A Tale of Two Transcriptomic Responses in Agricultural Pests via Host Defenses and Viral Replication. PMID:33808210
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Tags
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genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:53.899014
genotype and phenotype
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:53.899014
ontology and terminology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:53.899014
plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:53.899014
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:28:53.899014
Tags
More detailed information about this field from each metasource.
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:53.899014
genotype and phenotype
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:53.899014
ontology and terminology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:53.899014
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:53.899014
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:28:53.899014
genomics genotype and phenotype ontology and terminology plant biology molecular interactions, pathways and networks
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