EpiFactors
Names
More detailed information about this field from each metasource.
EpiFactors
metasource: Fairsharing.org
version: FAIRsharing.org: EpiFactors; EpiFactors; DOI: https://doi.org/10.25504/FAIRsharing.nv3g3d; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:23:26.642162
epifactors
metasource: bio.tools
version: extracted_at: 2022-11-04T11:23:26.642162
Names
More detailed information about this field from each metasource.
EpiFactors
metasource: Fairsharing.orgversion: FAIRsharing.org: EpiFactors; EpiFactors; DOI: https://doi.org/10.25504/FAIRsharing.nv3g3d; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:23:26.642162
epifactors
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:23:26.642162
Names
More detailed information about this field from each metasource.
EpiFactors
metasource: Fairsharing.orgversion: FAIRsharing.org: EpiFactors; EpiFactors; DOI: https://doi.org/10.25504/FAIRsharing.nv3g3d; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:23:26.642162
epifactors
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:23:26.642162
EpiFactors is a web-accessible database that provides broad information about human proteins and complexes involved in epigenetic regulation. It also lists corresponding genes and their expression levels in several samples, in particular 458 human primary cell samples, 255 different cancer cell lines and 134 human post-mortem tissues. Each protein and complex entry has been provided with links to external public resources.
Description
More detailed information about this field from each metasource.
EpiFactors is a web-accessible database that provides broad information about human proteins and complexes involved in epigenetic regulation. It also lists corresponding genes and their expression levels in several samples, in particular 458 human primary cell samples, 255 different cancer cell lines and 134 human post-mortem tissues. Each protein and complex entry has been provided with links to external public resources.
metasource: Fairsharing.orgversion: FAIRsharing.org: EpiFactors; EpiFactors; DOI: https://doi.org/10.25504/FAIRsharing.nv3g3d; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
EpiFactors is a database for epigenetic factors such as histones, protamines, other proteins and lncRNAs. It compiles functional information about human and mouse epigenetic regulators, their complexes, and expression in multiple cell types to facilitate the work of researchers in the field of epigenetics.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:23:26.642162
Webpage:
https://epifactors.autosome.org/Webpage
More detailed information about this field from each metasource.
https://epifactors.autosome.org/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:23:26.642162
http://www.epifactors.autosome.ru/
metasource: Fairsharing.orgversion: FAIRsharing.org: EpiFactors; EpiFactors; DOI: https://doi.org/10.25504/FAIRsharing.nv3g3d; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Licence:
Name: FreewareLicence name
More detailed information about this field from each metasource.
Publications:
Publications
More detailed information about this field from each metasource.
EpiFactors: a comprehensive database of human epigenetic factors and complexes
PMID: 26153137
metasource: Fairsharing.org
version: FAIRsharing.org: EpiFactors; EpiFactors; DOI: https://doi.org/10.25504/FAIRsharing.nv3g3d; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:23:26.642162
Publications
More detailed information about this field from each metasource.
EpiFactors: a comprehensive database of human epigenetic factors and complexes
PMID: 26153137
metasource: Fairsharing.org
version: FAIRsharing.org: EpiFactors; EpiFactors; DOI: https://doi.org/10.25504/FAIRsharing.nv3g3d; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:23:26.642162
-
EpiFactors: a comprehensive database of human epigenetic factors and complexes
PubMed citations: 80.
80 articles citing: EpiFactors: a comprehensive database of human epigenetic factors and complexes
OrthoQuantum: visualizing evolutionary repertoire of eukaryotic proteins. PMID:35610035
Transcriptome Architecture of Osteoblastic Cells Infected With Staphylococcus aureus Reveals Strong Inflammatory Responses and Signatures of Metabolic and Epigenetic Dysregulation. PMID:35531332
Epigenome erosion and SOX10 drive neural crest phenotypic mimicry in triple-negative breast cancer. PMID:35501337
Genome-wide screening for genes involved in the epigenetic basis of fragile X syndrome. PMID:35427485
Distinct and diverse chromatin proteomes of ageing mouse organs reveal protein signatures that correlate with physiological functions. PMID:35259090
Multi-omic analysis reveals significantly mutated genes and DDX3X as a sex-specific tumor suppressor in cutaneous melanoma. PMID:35121978
Mutually exclusive mutation profiles define functionally related genes in muscle invasive bladder cancer. PMID:35073341
Hypermethylation at the CXCR5 gene locus limits trafficking potential of CD8+ T cells into B-cell follicles during HIV-1 infection. PMID:34991160
GRWD1-WDR5-MLL2 Epigenetic Complex Mediates H3K4me3 Mark and Is Essential for Kaposi's Sarcoma-Associated Herpesvirus-Induced Cellular Transformation. PMID:34933446
Epigenetic and Immune-Cell Infiltration Changes in the Tumor Microenvironment in Hepatocellular Carcinoma. PMID:34925377
Alterations of Chromatin Regulators in the Pathogenesis of Urinary Bladder Urothelial Carcinoma. PMID:34885146
Systems biology and machine learning approaches identify drug targets in diabetic nephropathy. PMID:34873190
Identifying regulators of parental imprinting by CRISPR/Cas9 screening in haploid human embryonic stem cells. PMID:34795250
Growth of Biological Complexity from Prokaryotes to Hominids Reflected in the Human Genome. PMID:34769071
FusionGDB 2.0: fusion gene annotation updates aided by deep learning. PMID:34755868
Prognostic Significance of Dysregulated Epigenomic and Chromatin Modifiers in Cervical Cancer. PMID:34685645
p113 isoform encoded by CUX1 circular RNA drives tumor progression via facilitating ZRF1/BRD4 transactivation. PMID:34579723
Computational modeling reveals key molecular properties and dynamic behavior of disruptor of telomeric silencing 1-like (DOT1L) and partnering complexes involved in leukemogenesis. PMID:34414607
Comparative transcriptome analysis reveals key epigenetic targets in SARS-CoV-2 infection. PMID:34031419
Profiling the genetic determinants of chromatin accessibility with scalable single-cell CRISPR screens. PMID:33927415
SARS-CoV-2 Proteins Exploit Host's Genetic and Epigenetic Mediators for the Annexation of Key Host Signaling Pathways. PMID:33585554
Alignment-free method for functional annotation of amino acid substitutions: Application on epigenetic factors involved in hematologic malignancies. PMID:33395407
Network and Evolutionary Analysis of Human Epigenetic Regulators to Unravel Disease Associations. PMID:33291839
Effective inhibition of MYC-amplified group 3 medulloblastoma by FACT-targeted curaxin drug CBL0137. PMID:33268769
Development and validation of a nomogram with an epigenetic signature for predicting survival in patients with lung adenocarcinoma. PMID:33221751
DORGE: Discovery of Oncogenes and tumoR suppressor genes using Genetic and Epigenetic features. PMID:33177077
Lung transcriptome of a COVID-19 patient and systems biology predictions suggest impaired surfactant production which may be druggable by surfactant therapy. PMID:33173052
Longitudinal analysis of healthy colon establishes aspirin as a suppressor of cancer-related epigenetic aging. PMID:33143725
Recent progress on cheminformatics approaches to epigenetic drug discovery. PMID:33010481
Computational methods and next-generation sequencing approaches to analyze epigenetics data: Profiling of methods and applications. PMID:32941995
Global epigenetic alterations of mesenchymal stem cells in obesity: the role of vitamin C reprogramming. PMID:32893712
Genome-wide identification of genes regulating DNA methylation using genetic anchors for causal inference. PMID:32859263
Kinase Interaction Network Expands Functional and Disease Roles of Human Kinases. PMID:32707033
Intrinsic transcriptomic sex differences in human endothelial cells at birth and in adults are associated with coronary artery disease targets. PMID:32704153
Comparative analysis of single-cell transcriptomics in human and Zebrafish oocytes. PMID:32640983
The Chromatin Regulator ZMYM2 Restricts Human Pluripotent Stem Cell Growth and Is Essential for Teratoma Formation. PMID:32559458
BAHD1 haploinsufficiency results in anxiety-like phenotypes in male mice. PMID:32407325
Amygdala 5-HTT Gene Network Moderates the Effects of Postnatal Adversity on Attention Problems: Anatomo-Functional Correlation and Epigenetic Changes. PMID:32256307
Enhanced identification of significant regulators of gene expression. PMID:32252623
A Sustained Immune Response Supports Long-Term Antiviral Immune Priming in the Pacific Oyster, Crassostrea gigas. PMID:32156821
Targeting p53 and histone methyltransferases restores exhausted CD8+ T cells in HCV infection. PMID:32001678
A regulatory role for CHD2 in myelopoiesis. PMID:31900031
Epigenetic remodelling licences adult cholangiocytes for organoid formation and liver regeneration. PMID:31685987
A multicenter analysis of genomic profiles and PD-L1 expression of primary lymphoepithelioma-like carcinoma of the lung. PMID:31659278
Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction. PMID:31519873
A Genome Model to Explain Major Features of Neurodevelopmental Disorders in Newborns. PMID:31391780
Human chromatin remodeler cofactor, RNA interactor, eraser and writer sperm RNAs responding to obesity. PMID:31354029
Defective HNF4alpha-dependent gene expression as a driver of hepatocellular failure in alcoholic hepatitis. PMID:31311938
TOX transcriptionally and epigenetically programs CD8+ T cell exhaustion. PMID:31207603
Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks. PMID:31118277
Coexpression patterns define epigenetic regulators associated with neurological dysfunction. PMID:30858344
KMT1 family methyltransferases regulate heterochromatin-nuclear periphery tethering via histone and non-histone protein methylation. PMID:30858340
Prenatal arsenic exposure alters the placental expression of multiple epigenetic regulators in a sex-dependent manner. PMID:30819207
CpG traffic lights are markers of regulatory regions in human genome. PMID:30709331
TBL1 is required for the mesenchymal phenotype of transformed breast cancer cells. PMID:30705280
Chromatin-Based Classification of Genetically Heterogeneous AMLs into Two Distinct Subtypes with Diverse Stemness Phenotypes. PMID:30673601
Transposable elements are regulated by context-specific patterns of chromatin marks in mouse embryonic stem cells. PMID:30604769
Epigenetic modifications acetylation and deacetylation play important roles in juvenile hormone action. PMID:30547764
FusionGDB: fusion gene annotation DataBase. PMID:30407583
A pan-cancer analysis of driver gene mutations, DNA methylation and gene expressions reveals that chromatin remodeling is a major mechanism inducing global changes in cancer epigenomes. PMID:30400878
The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6→ Tbr2→ Tbr1. PMID:30186101
FACER: comprehensive molecular and functional characterization of epigenetic chromatin regulators. PMID:30102398
Recurrent loss of heterozygosity correlates with clinical outcome in pancreatic neuroendocrine cancer. PMID:30062048
Expression profiling of cell-intrinsic regulators in the process of differentiation of human iPSCs into retinal lineages. PMID:29751772
Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes Meloidogyne spp., with a focus on the asexually reproducing species. PMID:29724186
In silico cancer research towards 3R. PMID:29649981
B-CAN: a resource sharing platform to improve the operation, visualization and integrated analysis of TCGA breast cancer data. PMID:29312567
Neuron-specific alternative splicing of transcriptional machineries: Implications for neurodevelopmental disorders. PMID:29254826
P53 at the start of the 21st century: lessons from elephants. PMID:29250320
Monitoring transcription initiation activities in rat and dog. PMID:29182598
CR2Cancer: a database for chromatin regulators in human cancer. PMID:29036683
Epigenome alterations in aortic valve stenosis and its related left ventricular hypertrophy. PMID:29026447
Insights into beta cell regeneration for diabetes via integration of molecular landscapes in human insulinomas. PMID:28974674
SWI/SNF Infobase-An exclusive information portal for SWI/SNF remodeling complex subunits. PMID:28961249
A computational method using the random walk with restart algorithm for identifying novel epigenetic factors. PMID:28932904
Transforming Cancer Epigenetics Using Nutritive Approaches and Noncoding RNAs. PMID:28176654
ARN: Analysis and Visualization System for Adipogenic Regulation Network Information. PMID:27982098
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. PMID:27794045
Gene expression profiling of epigenetic chromatin modification enzymes and histone marks by cigarette smoke: implications for COPD and lung cancer. PMID:27793800
Preservation of methylated CpG dinucleotides in human CpG islands. PMID:27005429
Tags:
Tags
More detailed information about this field from each metasource.
cell
metasource: Fairsharing.org
version: FAIRsharing.org: EpiFactors; EpiFactors; DOI: https://doi.org/10.25504/FAIRsharing.nv3g3d; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: EpiFactors; EpiFactors; DOI: https://doi.org/10.25504/FAIRsharing.nv3g3d; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: EpiFactors; EpiFactors; DOI: https://doi.org/10.25504/FAIRsharing.nv3g3d; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
molecular biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:23:26.642162
functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:23:26.642162
epigenomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:23:26.642162
data integration and warehousing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:23:26.642162
Tags
More detailed information about this field from each metasource.
cell
metasource: Fairsharing.orgversion: FAIRsharing.org: EpiFactors; EpiFactors; DOI: https://doi.org/10.25504/FAIRsharing.nv3g3d; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: EpiFactors; EpiFactors; DOI: https://doi.org/10.25504/FAIRsharing.nv3g3d; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: EpiFactors; EpiFactors; DOI: https://doi.org/10.25504/FAIRsharing.nv3g3d; Last edited: Jan. 8, 2019, 1:21 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
molecular biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:23:26.642162
functional, regulatory and non-coding rna
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:23:26.642162
epigenomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:23:26.642162
data integration and warehousing
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:23:26.642162
cell gene expression protein molecular biology functional, regulatory and non-coding rna epigenomics data integration and warehousing
Need help integrating and/or managing biomedical data?